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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HTRA1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
110.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
702.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
642.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
458.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
402.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
398.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
390.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
377.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
359.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
348.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
347.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
318.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
311.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
303.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
302.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
285.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
285.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
282.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
270.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
270.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
268.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
258.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
251.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
250.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
250.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
249.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
247.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
241.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
241.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
240.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
236.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
236.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
229.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
228.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
223.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
223.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
220.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
219.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
217.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
209.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
208.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
204.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
204.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
203.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
201.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
198.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
198.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
195.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
193.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
192.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
191.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
189.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
188.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
181.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
179.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
178.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
178.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
177.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
175.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
174.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
169.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
169.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
169.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
168.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
167.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
166.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
165.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
164.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
163.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
163.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
162.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
162.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
161.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
159.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
158.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
157.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
154.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
153.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
152.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
152.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
151.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
151.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
147.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
147.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
146.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
146.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
145.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
144.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
144.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
144.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
143.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
142.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
141.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
141.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
141.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
140.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
139.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
137.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
137.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
136.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
135.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
135.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
134.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
134.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
134.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
133.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
133.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
133.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
133.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
132.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
132.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
132.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
131.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
131.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
130.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
130.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
130.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
129.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
128.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
128.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
127.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
125.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
124.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
123.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
123.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
122.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
122.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
121.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
121.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
120.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
119.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
118.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
118.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
118.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
118.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
118.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
117.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
117.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
117.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
116.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
116.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
115.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
115.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
114.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
114.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
113.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
112.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
112.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
112.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
112.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
111.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
111.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
110.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
107.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
107.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
106.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
106.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
106.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
105.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
104.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
103.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
103.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
103.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
102.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
101.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
101.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
100.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
100.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
99.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
99.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
98.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
98.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
98.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
98.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
98.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
97.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
97.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
97.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
96.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
96.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
94.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
94.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
94.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
92.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
91.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
91.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
90.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
90.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
90.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
90.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
90.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
90.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
89.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
88.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
88.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
88.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
88.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
88.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
88.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
88.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
87.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
87.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
86.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
85.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
85.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
85.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
84.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
83.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
82.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
81.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
81.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
80.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
80.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
79.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
78.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
77.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
77.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
77.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
75.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
75.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
74.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
74.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
72.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
72.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
72.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
71.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
71.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
70.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
70.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
70.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
69.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
69.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
68.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
68.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
67.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
66.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
66.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
65.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
65.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
64.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
63.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
62.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
62.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
61.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
60.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
60.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
59.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
59.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
59.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
58.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
58.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
58.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
58.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
57.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
57.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
57.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
56.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
56.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
55.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
55.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
55.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
54.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
53.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
52.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
51.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
51.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
50.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
50.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
49.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
49.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
49.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
49.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
48.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
48.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
47.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
46.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
46.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
46.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
46.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
46.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
45.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
45.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
44.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
42.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
42.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
42.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
42.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
41.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
41.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
40.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
40.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
40.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
40.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
38.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
38.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
38.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
38.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
37.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
37.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
36.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
36.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
36.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
34.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
34.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
33.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
33.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
33.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
31.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
29.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
29.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
29.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
26.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
26.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
22.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
21.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HTRA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
53.9
Number of samples
231
Samples
Sample
Description
TPM
DO45155
0 years, male, NA, stage:2, alive, 2160 days
438.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
245.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
217.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
170.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
160.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
159.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
152.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
151.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
151.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
145.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
140.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
140.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
134.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
134.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
133.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
133.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
126.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
124.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
119.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
113.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
112.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
109.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
109.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
106.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
102.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
100.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
98.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
98.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
96.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
95.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
92.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
91.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
91.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
90.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
90.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
90.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
90.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
89.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
88.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
88.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
88.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
87.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
86.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
85.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
85.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
85.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
82.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
82.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
81.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
81.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
80.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
79.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
78.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
73.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
72.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
71.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
70.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
69.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
69.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
68.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
68.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
68.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
68.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
67.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
66.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
66.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
64.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
63.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
63.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
63.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
63.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
61.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
61.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
61.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
61.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
60.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
59.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
59.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
59.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
58.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
58.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
56.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
55.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
55.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
54.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
54.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
53.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
52.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
51.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
51.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
51.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
51.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
50.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
50.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
50.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
50.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
48.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
48.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
48.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
47.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
47.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
46.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
46.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
45.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
45.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
45.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
45.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
44.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
44.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
44.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
44.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
44.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
44.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
44.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
43.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
43.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
43.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
43.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
42.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
42.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
42.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
42.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
40.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
40.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
39.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
39.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
39.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
39.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
38.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
38.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
38.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
38.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
37.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
37.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
37.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
36.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
36.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
35.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
34.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
34.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
33.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
33.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
32.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
32.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
31.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
31.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
30.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
30.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
30.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
30.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
29.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
28.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
27.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
27.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
27.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
26.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
26.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
26.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
21.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
355
Tumor
2.4
877
Tumor
2.3
817
Tumor
2.2
823
Tumor
2.2
697
Tumor
2.2
343
Tumor
2.0
125
Tumor
1.7
471
Tumor
1.5
671
Tumor
1.4
224
Normal
1.3
185
Tumor
1.2
545
Tumor
1.2
192
Normal
1.1
223
Tumor
1.0
745
Tumor
1.0
573
Tumor
1.0
375
Tumor
1.0
713
Tumor
0.9
937
Tumor
0.9
257
Tumor
0.8
283
Tumor
0.8
297
Tumor
0.8
421
Tumor
0.8
187
Tumor
0.8
311
Tumor
0.7
313
Tumor
0.7
813
Tumor
0.7
863
Tumor
0.7
1027
Tumor
0.7
491
Tumor
0.6
883
Tumor
0.6
527
Tumor
0.6
425
Tumor
0.6
213
Tumor
0.6
463
Tumor
0.6
715
Tumor
0.5
271
Tumor
0.5
975
Tumor
0.5
641
Tumor
0.5
217
Tumor
0.5
211
Tumor
0.5
277
Tumor
0.5
958
Normal
0.5
523
Tumor
0.5
982
Normal
0.5
383
Tumor
0.4
395
Tumor
0.4
447
Tumor
0.4
483
Tumor
0.4
535
Tumor
0.4
361
Tumor
0.4
384
Normal
0.4
635
Tumor
0.4
161
Tumor
0.4
433
Tumor
0.3
444
Normal
0.3
881
Tumor
0.3
921
Tumor
0.3
455
Tumor
0.3
331
Tumor
0.3
393
Tumor
0.3
354
Normal
0.3
567
Tumor
0.3
492
Normal
0.3
357
Tumor
0.3
852
Normal
0.3
917
Tumor
0.2
137
Tumor
0.2
366
Normal
0.2
743
Tumor
0.2
557
Tumor
0.2
814
Normal
0.2
536
Normal
0.2
953
Tumor
0.2
755
Tumor
0.2
385
Tumor
0.1
191
Tumor
0.1
427
Tumor
0.1
516
Normal
0.1
1044
Normal
0.1
464
Normal
0.1
1021
Tumor
0.1
923
Tumor
0.1
146
Normal
0.1
862
Normal
0.1
467
Tumor
0.1
268
Normal
0.1
391
Tumor
0.1
124
Normal
0.0
368
Normal
0.0
145
Tumor
0.0
228
Normal
0.0
312
Normal
0.0
113
Tumor
0.0
524
Normal
0.0
571
Tumor
0.0
386
Normal
0.0
443
Tumor
0.0
394
Normal
0.0
452
Normal
0.0
537
Tumor
0.0
563
Tumor
0.0
138
Normal
0.0
376
Normal
0.0
716
Normal
0.0
468
Normal
0.0
284
Normal
0.0
943
Tumor
0.0
672
Normal
0.0
135
Tumor
0.0
362
Normal
0.0
142
Normal
0.0
1025
Tumor
-0.1
818
Normal
-0.1
365
Tumor
-0.1
722
Normal
-0.1
141
Tumor
-0.1
981
Tumor
-0.1
218
Normal
-0.1
344
Normal
-0.1
186
Normal
-0.1
434
Normal
-0.1
456
Normal
-0.1
364
Normal
-0.1
132
Normal
-0.1
493
Tumor
-0.1
517
Tumor
-0.1
332
Normal
-0.1
388
Normal
-0.1
695
Tumor
-0.1
698
Normal
-0.1
131
Tumor
-0.1
392
Normal
-0.1
314
Normal
-0.1
435
Tumor
-0.1
353
Tumor
-0.1
446
Normal
-0.1
327
Tumor
-0.1
976
Normal
-0.2
558
Normal
-0.2
574
Normal
-0.2
494
Normal
-0.2
466
Normal
-0.2
342
Normal
-0.2
564
Normal
-0.2
451
Tumor
-0.2
662
Normal
-0.2
738
Normal
-0.2
465
Tumor
-0.2
445
Tumor
-0.2
111
Normal
-0.2
396
Normal
-0.2
685
Tumor
-0.2
461
Tumor
-0.2
298
Normal
-0.2
227
Tumor
-0.2
956
Normal
-0.2
568
Normal
-0.2
572
Normal
-0.2
497
Tumor
-0.2
136
Normal
-0.2
114
Normal
-0.2
212
Normal
-0.3
737
Tumor
-0.3
922
Normal
-0.3
857
Tumor
-0.3
864
Normal
-0.3
498
Normal
-0.3
367
Tumor
-0.3
741
Tumor
-0.3
916
Normal
-0.3
1041
Tumor
-0.3
267
Tumor
-0.3
666
Normal
-0.3
214
Normal
-0.3
918
Normal
-0.3
474
Normal
-0.3
665
Tumor
-0.3
1015
Tumor
-0.3
963
Tumor
-0.3
278
Normal
-0.3
147
Tumor
-0.3
696
Normal
-0.3
478
Normal
-0.3
664
Normal
-0.3
188
Normal
-0.3
721
Tumor
-0.3
514
Normal
-0.3
538
Normal
-0.3
714
Normal
-0.3
195
Tumor
-0.3
448
Normal
-0.3
387
Tumor
-0.3
615
Tumor
-0.3
525
Tumor
-0.4
358
Normal
-0.4
1045
Tumor
-0.4
412
Normal
-0.4
616
Normal
-0.4
422
Normal
-0.4
352
Normal
-0.4
816
Normal
-0.4
126
Normal
-0.4
123
Tumor
-0.4
874
Normal
-0.4
526
Normal
-0.4
925
Tumor
-0.4
351
Tumor
-0.4
924
Normal
-0.4
618
Normal
-0.4
954
Normal
-0.4
647
Tumor
-0.4
1042
Normal
-0.4
128
Normal
-0.4
824
Normal
-0.4
428
Normal
-0.4
424
Normal
-0.4
628
Normal
-0.4
328
Normal
-0.4
742
Normal
-0.4
744
Normal
-0.4
785
Tumor
-0.4
341
Tumor
-0.4
286
Normal
-0.4
436
Normal
-0.4
356
Normal
-0.5
416
Normal
-0.5
627
Tumor
-0.5
756
Normal
-0.5
926
Normal
-0.5
727
Tumor
-0.5
944
Normal
-0.5
426
Normal
-0.5
984
Normal
-0.5
127
Tumor
-0.5
414
Normal
-0.5
546
Normal
-0.5
938
Normal
-0.5
432
Normal
-0.5
484
Normal
-0.5
952
Normal
-0.5
968
Normal
-0.5
728
Normal
-0.5
912
Normal
-0.5
884
Normal
-0.5
648
Normal
-0.5
777
Tumor
-0.5
724
Normal
-0.6
171
Tumor
-0.6
462
Normal
-0.6
488
Normal
-0.6
472
Normal
-0.6
915
Tumor
-0.6
533
Tumor
-0.6
964
Normal
-0.6
882
Normal
-0.6
1046
Normal
-0.6
1016
Normal
-0.6
873
Tumor
-0.6
232
Normal
-0.6
162
Normal
-0.6
431
Tumor
-0.6
518
Normal
-0.6
262
Normal
-0.6
642
Normal
-0.6
955
Tumor
-0.6
686
Normal
-0.6
172
Normal
-0.6
222
Normal
-0.6
861
Tumor
-0.6
1026
Normal
-0.6
636
Normal
-0.6
415
Tumor
-0.6
815
Tumor
-0.6
723
Tumor
-0.6
786
Normal
-0.7
1043
Tumor
-0.7
978
Normal
-0.7
112
Tumor
-0.7
868
Normal
-0.7
966
Normal
-0.7
983
Tumor
-0.7
148
Normal
-0.7
413
Tumor
-0.7
513
Tumor
-0.7
482
Normal
-0.7
914
Normal
-0.7
913
Tumor
-0.7
778
Normal
-0.7
858
Normal
-0.7
617
Tumor
-0.7
515
Tumor
-0.7
1032
Normal
-0.7
866
Normal
-0.7
1022
Normal
-0.7
534
Normal
-0.8
1028
Normal
-0.8
851
Tumor
-0.8
528
Normal
-0.8
272
Normal
-0.8
423
Tumor
-0.8
196
Normal
-0.8
411
Tumor
-0.8
258
Normal
-0.8
487
Tumor
-0.8
285
Tumor
-0.8
746
Normal
-0.8
957
Tumor
-0.8
554
Normal
-0.9
261
Tumor
-0.9
231
Tumor
-0.9
663
Tumor
-0.9
1014
Normal
-1.0
221
Tumor
-1.0
481
Tumor
-1.0
867
Tumor
-1.1
951
Tumor
-1.1
977
Tumor
-1.1
477
Tumor
-1.1
553
Tumor
-1.1
363
Tumor
-1.2
911
Tumor
-1.2
967
Tumor
-1.2
661
Tumor
-1.2
1013
Tumor
-1.2
878
Normal
-1.2
473
Tumor
-1.3
1031
Tumor
-1.3
865
Tumor
-1.4
965
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.