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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DDX21 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
46.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
42.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
37.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
37.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
34.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
31.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
30.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
28.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
17.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DDX21 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.2
Number of samples
231
Samples
Sample
Description
TPM
DO23530
0 years, male, NA, stage:4, dead, 180 days
55.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
48.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
46.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
43.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
40.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
40.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
39.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
38.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
37.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
37.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
35.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
34.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
34.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
34.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
33.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
33.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
32.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
32.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
32.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
30.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
28.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
27.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
27.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
27.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
26.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
26.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
25.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
25.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
25.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
25.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
23.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
331
Tumor
1.5
367
Tumor
1.5
537
Tumor
1.4
567
Tumor
1.4
951
Tumor
1.3
965
Tumor
1.3
983
Tumor
1.3
351
Tumor
1.3
385
Tumor
1.2
671
Tumor
1.1
535
Tumor
1.1
661
Tumor
1.1
471
Tumor
1.0
211
Tumor
1.0
227
Tumor
1.0
395
Tumor
1.0
1021
Tumor
1.0
685
Tumor
1.0
557
Tumor
0.9
743
Tumor
0.9
815
Tumor
0.9
387
Tumor
0.9
517
Tumor
0.8
285
Tumor
0.8
967
Tumor
0.8
1025
Tumor
0.8
391
Tumor
0.7
413
Tumor
0.7
817
Tumor
0.7
123
Tumor
0.7
881
Tumor
0.7
171
Tumor
0.7
573
Tumor
0.6
883
Tumor
0.6
267
Tumor
0.6
925
Tumor
0.6
311
Tumor
0.6
473
Tumor
0.6
113
Tumor
0.5
271
Tumor
0.5
483
Tumor
0.5
363
Tumor
0.5
851
Tumor
0.5
665
Tumor
0.5
443
Tumor
0.5
497
Tumor
0.5
724
Normal
0.4
297
Tumor
0.4
187
Tumor
0.4
715
Tumor
0.4
447
Tumor
0.4
877
Tumor
0.4
697
Tumor
0.3
1031
Tumor
0.3
635
Tumor
0.3
455
Tumor
0.3
523
Tumor
0.3
493
Tumor
0.3
861
Tumor
0.3
957
Tumor
0.3
923
Tumor
0.3
217
Tumor
0.3
427
Tumor
0.3
814
Normal
0.3
135
Tumor
0.3
213
Tumor
0.3
421
Tumor
0.3
963
Tumor
0.3
921
Tumor
0.3
127
Tumor
0.3
467
Tumor
0.3
1041
Tumor
0.2
185
Tumor
0.2
231
Tumor
0.2
283
Tumor
0.2
917
Tumor
0.2
713
Tumor
0.2
937
Tumor
0.2
813
Tumor
0.2
641
Tumor
0.2
353
Tumor
0.2
357
Tumor
0.2
545
Tumor
0.1
343
Tumor
0.1
223
Tumor
0.1
553
Tumor
0.1
191
Tumor
0.1
525
Tumor
0.1
257
Tumor
0.1
975
Tumor
0.1
785
Tumor
0.1
953
Tumor
0.1
131
Tumor
0.1
195
Tumor
0.1
145
Tumor
0.1
477
Tumor
0.1
431
Tumor
0.1
425
Tumor
0.1
423
Tumor
0.1
327
Tumor
0.1
571
Tumor
0.1
873
Tumor
0.0
411
Tumor
0.0
463
Tumor
0.0
355
Tumor
0.0
221
Tumor
0.0
361
Tumor
0.0
823
Tumor
0.0
755
Tumor
0.0
161
Tumor
0.0
433
Tumor
0.0
341
Tumor
0.0
375
Tumor
0.0
745
Tumor
0.0
563
Tumor
0.0
1027
Tumor
0.0
617
Tumor
0.0
737
Tumor
0.0
393
Tumor
-0.1
977
Tumor
-0.1
435
Tumor
-0.1
125
Tumor
-0.1
533
Tumor
-0.1
647
Tumor
-0.1
615
Tumor
-0.1
727
Tumor
-0.1
536
Normal
-0.1
865
Tumor
-0.1
277
Tumor
-0.2
867
Tumor
-0.2
141
Tumor
-0.2
943
Tumor
-0.2
112
Tumor
-0.2
261
Tumor
-0.2
451
Tumor
-0.2
721
Tumor
-0.2
445
Tumor
-0.2
352
Normal
-0.2
911
Tumor
-0.2
741
Tumor
-0.2
415
Tumor
-0.2
1045
Tumor
-0.3
1015
Tumor
-0.3
481
Tumor
-0.3
332
Normal
-0.3
383
Tumor
-0.3
915
Tumor
-0.3
913
Tumor
-0.3
534
Normal
-0.3
857
Tumor
-0.3
966
Normal
-0.3
978
Normal
-0.3
491
Tumor
-0.3
981
Tumor
-0.3
1043
Tumor
-0.3
494
Normal
-0.3
147
Tumor
-0.3
344
Normal
-0.3
524
Normal
-0.3
448
Normal
-0.3
422
Normal
-0.4
488
Normal
-0.4
498
Normal
-0.4
528
Normal
-0.4
314
Normal
-0.4
384
Normal
-0.4
396
Normal
-0.4
492
Normal
-0.4
527
Tumor
-0.4
313
Tumor
-0.4
368
Normal
-0.4
538
Normal
-0.4
695
Tumor
-0.4
976
Normal
-0.4
686
Normal
-0.4
286
Normal
-0.4
137
Tumor
-0.4
648
Normal
-0.4
756
Normal
-0.4
392
Normal
-0.4
912
Normal
-0.4
664
Normal
-0.4
228
Normal
-0.4
268
Normal
-0.4
188
Normal
-0.4
148
Normal
-0.4
262
Normal
-0.4
546
Normal
-0.4
568
Normal
-0.4
666
Normal
-0.4
365
Tumor
-0.4
916
Normal
-0.4
461
Tumor
-0.4
955
Tumor
-0.4
138
Normal
-0.4
1013
Tumor
-0.4
672
Normal
-0.4
354
Normal
-0.4
627
Tumor
-0.4
192
Normal
-0.4
388
Normal
-0.4
298
Normal
-0.4
126
Normal
-0.4
574
Normal
-0.4
342
Normal
-0.4
362
Normal
-0.4
272
Normal
-0.4
394
Normal
-0.4
714
Normal
-0.4
964
Normal
-0.4
128
Normal
-0.4
446
Normal
-0.4
278
Normal
-0.4
968
Normal
-0.5
982
Normal
-0.5
1028
Normal
-0.5
358
Normal
-0.5
513
Tumor
-0.5
376
Normal
-0.5
1046
Normal
-0.5
786
Normal
-0.5
696
Normal
-0.5
465
Tumor
-0.5
232
Normal
-0.5
716
Normal
-0.5
882
Normal
-0.5
284
Normal
-0.5
662
Normal
-0.5
356
Normal
-0.5
564
Normal
-0.5
136
Normal
-0.5
722
Normal
-0.5
386
Normal
-0.5
663
Tumor
-0.5
484
Normal
-0.5
482
Normal
-0.5
1016
Normal
-0.5
1032
Normal
-0.5
124
Normal
-0.5
218
Normal
-0.5
162
Normal
-0.5
132
Normal
-0.5
984
Normal
-0.5
1014
Normal
-0.5
918
Normal
-0.5
558
Normal
-0.5
866
Normal
-0.5
884
Normal
-0.5
956
Normal
-0.5
434
Normal
-0.5
196
Normal
-0.5
738
Normal
-0.5
222
Normal
-0.5
186
Normal
-0.5
212
Normal
-0.5
328
Normal
-0.5
428
Normal
-0.5
572
Normal
-0.5
172
Normal
-0.5
518
Normal
-0.5
142
Normal
-0.5
114
Normal
-0.5
424
Normal
-0.6
926
Normal
-0.6
472
Normal
-0.6
723
Tumor
-0.6
746
Normal
-0.6
728
Normal
-0.6
824
Normal
-0.6
364
Normal
-0.6
863
Tumor
-0.6
554
Normal
-0.6
514
Normal
-0.6
366
Normal
-0.6
628
Normal
-0.6
412
Normal
-0.6
474
Normal
-0.6
1044
Normal
-0.6
224
Normal
-0.6
214
Normal
-0.6
146
Normal
-0.6
744
Normal
-0.6
858
Normal
-0.6
862
Normal
-0.6
436
Normal
-0.6
868
Normal
-0.6
462
Normal
-0.6
526
Normal
-0.6
487
Tumor
-0.6
938
Normal
-0.6
864
Normal
-0.6
742
Normal
-0.6
698
Normal
-0.6
478
Normal
-0.6
878
Normal
-0.6
914
Normal
-0.6
258
Normal
-0.6
1026
Normal
-0.6
111
Normal
-0.6
636
Normal
-0.6
444
Normal
-0.6
416
Normal
-0.6
922
Normal
-0.6
874
Normal
-0.6
852
Normal
-0.6
952
Normal
-0.6
954
Normal
-0.6
312
Normal
-0.6
944
Normal
-0.7
958
Normal
-0.7
432
Normal
-0.7
616
Normal
-0.7
426
Normal
-0.7
778
Normal
-0.7
1022
Normal
-0.7
466
Normal
-0.7
1042
Normal
-0.7
816
Normal
-0.7
818
Normal
-0.7
414
Normal
-0.7
618
Normal
-0.7
515
Tumor
-0.7
516
Normal
-0.7
464
Normal
-0.7
777
Tumor
-0.7
642
Normal
-0.7
468
Normal
-0.7
924
Normal
-0.7
456
Normal
-0.8
452
Normal
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
