We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GHITM is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
90.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
225.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
205.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
195.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
194.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
193.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
189.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
189.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
179.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
178.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
174.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
173.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
173.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
169.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
168.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
167.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
167.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
165.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
165.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
164.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
155.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
155.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
154.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
151.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
150.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
149.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
148.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
148.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
147.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
146.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
144.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
143.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
143.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
143.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
143.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
143.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
143.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
142.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
140.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
139.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
139.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
138.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
138.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
138.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
137.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
137.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
136.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
136.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
135.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
135.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
135.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
134.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
133.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
133.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
132.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
132.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
130.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
130.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
130.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
129.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
128.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
127.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
127.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
126.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
126.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
124.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
123.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
123.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
122.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
121.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
121.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
119.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
119.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
119.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
119.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
118.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
118.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
118.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
117.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
117.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
117.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
116.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
116.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
116.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
115.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
115.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
115.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
115.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
114.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
114.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
114.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
114.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
113.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
113.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
113.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
113.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
112.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
111.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
110.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
110.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
110.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
108.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
108.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
107.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
107.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
106.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
106.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
106.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
106.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
106.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
105.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
105.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
104.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
104.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
104.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
103.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
103.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
103.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
103.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
102.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
102.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
102.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
102.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
102.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
101.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
100.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
100.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
100.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
100.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
100.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
99.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
99.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
99.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
98.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
98.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
97.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
97.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
97.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
96.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
96.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
96.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
96.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
96.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
96.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
95.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
95.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
95.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
95.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
94.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
94.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
94.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
94.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
94.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
93.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
93.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
93.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
93.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
93.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
92.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
92.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
92.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
92.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
92.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
91.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
91.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
91.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
91.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
90.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
90.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
90.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
89.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
89.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
88.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
88.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
88.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
87.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
87.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
87.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
86.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
86.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
86.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
86.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
86.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
86.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
85.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
85.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
85.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
85.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
85.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
84.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
84.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
84.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
84.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
84.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
83.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
83.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
83.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
83.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
82.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
82.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
82.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
82.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
82.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
82.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
81.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
81.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
81.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
81.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
81.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
80.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
80.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
79.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
79.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
79.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
78.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
78.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
78.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
78.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
77.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
77.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
76.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
76.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
76.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
75.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
75.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
75.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
75.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
74.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
74.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
74.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
74.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
73.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
73.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
73.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
73.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
73.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
73.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
72.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
72.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
72.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
71.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
71.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
71.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
70.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
70.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
69.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
69.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
69.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
68.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
68.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
68.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
67.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
67.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
66.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
66.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
66.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
65.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
65.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
65.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
65.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
65.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
65.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
65.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
64.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
64.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
63.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
63.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
63.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
63.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
63.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
63.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
62.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
62.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
62.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
61.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
61.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
61.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
60.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
60.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
60.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
59.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
59.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
59.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
58.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
58.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
58.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
58.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
58.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
57.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
57.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
57.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
56.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
55.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
55.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
55.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
55.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
55.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
54.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
54.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
54.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
53.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
53.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
53.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
52.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
52.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
50.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
49.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
49.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
49.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
48.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
48.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
48.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
48.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
47.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
47.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
47.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
47.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
47.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
47.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
46.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
46.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
45.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
45.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
45.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
45.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
45.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
44.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
44.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
43.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
42.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
42.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
42.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
39.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
38.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
38.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
38.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
37.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
37.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
36.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
36.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
35.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
35.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
35.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
35.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
34.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
34.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
34.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
33.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
32.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
31.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
30.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
30.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
29.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
29.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
28.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
27.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
26.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
26.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
25.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
22.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GHITM is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
89.5
Number of samples
231
Samples
Sample
Description
TPM
DO45171
0 years, male, NA, stage:3, alive, 600 days
270.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
229.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
223.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
204.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
198.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
190.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
189.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
185.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
172.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
171.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
168.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
166.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
165.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
164.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
163.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
156.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
155.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
154.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
145.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
144.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
144.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
143.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
142.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
141.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
140.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
138.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
135.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
135.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
135.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
131.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
129.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
129.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
128.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
128.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
127.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
126.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
122.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
122.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
121.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
121.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
119.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
118.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
118.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
117.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
117.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
116.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
115.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
115.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
114.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
114.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
114.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
114.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
113.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
113.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
111.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
111.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
111.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
111.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
111.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
110.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
110.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
108.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
107.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
106.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
105.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
104.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
104.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
104.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
104.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
104.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
103.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
103.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
103.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
103.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
101.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
100.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
98.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
98.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
97.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
95.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
95.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
95.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
94.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
94.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
93.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
93.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
93.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
93.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
93.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
92.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
92.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
91.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
91.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
90.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
89.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
89.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
88.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
87.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
86.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
86.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
85.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
85.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
84.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
84.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
84.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
84.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
84.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
83.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
83.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
83.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
83.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
83.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
83.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
82.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
82.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
82.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
81.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
81.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
81.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
81.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
81.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
81.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
80.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
79.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
79.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
79.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
79.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
78.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
78.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
77.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
77.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
76.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
76.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
75.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
74.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
73.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
72.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
72.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
72.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
72.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
72.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
71.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
71.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
71.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
70.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
70.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
70.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
70.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
69.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
68.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
68.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
68.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
68.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
68.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
67.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
67.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
66.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
66.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
66.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
65.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
65.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
65.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
65.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
64.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
63.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
63.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
62.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
62.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
62.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
61.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
61.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
61.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
61.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
60.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
60.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
59.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
59.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
59.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
59.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
58.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
58.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
58.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
58.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
57.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
57.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
56.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
56.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
55.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
55.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
55.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
55.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
55.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
53.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
52.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
52.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
52.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
51.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
51.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
51.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
51.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
50.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
50.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
50.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
49.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
48.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
48.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
48.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
47.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
47.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
47.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
46.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
45.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
45.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
45.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
43.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
43.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
42.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
41.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
41.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
41.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
41.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
40.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
40.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
37.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
37.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
36.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
35.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
35.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
32.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
231
Tumor
1.2
925
Tumor
1.1
745
Tumor
1.0
937
Tumor
0.9
571
Tumor
0.9
567
Tumor
0.7
127
Tumor
0.7
1025
Tumor
0.7
627
Tumor
0.6
341
Tumor
0.5
411
Tumor
0.5
911
Tumor
0.5
227
Tumor
0.5
741
Tumor
0.5
484
Normal
0.5
423
Tumor
0.5
786
Normal
0.4
113
Tumor
0.4
912
Normal
0.4
526
Normal
0.4
615
Tumor
0.4
873
Tumor
0.4
436
Normal
0.4
862
Normal
0.4
414
Normal
0.4
477
Tumor
0.4
224
Normal
0.4
981
Tumor
0.4
351
Tumor
0.4
298
Normal
0.4
465
Tumor
0.4
824
Normal
0.4
858
Normal
0.4
755
Tumor
0.4
564
Normal
0.4
428
Normal
0.4
358
Normal
0.4
864
Normal
0.4
534
Normal
0.4
514
Normal
0.4
557
Tumor
0.4
422
Normal
0.4
524
Normal
0.4
698
Normal
0.4
616
Normal
0.3
636
Normal
0.3
421
Tumor
0.3
982
Normal
0.3
426
Normal
0.3
883
Tumor
0.3
857
Tumor
0.3
1014
Normal
0.3
424
Normal
0.3
328
Normal
0.3
1041
Tumor
0.3
882
Normal
0.3
1026
Normal
0.3
278
Normal
0.3
284
Normal
0.3
314
Normal
0.3
212
Normal
0.3
1027
Tumor
0.3
392
Normal
0.3
738
Normal
0.3
1032
Normal
0.3
513
Tumor
0.3
954
Normal
0.3
648
Normal
0.3
728
Normal
0.3
472
Normal
0.3
162
Normal
0.3
568
Normal
0.3
915
Tumor
0.3
742
Normal
0.2
148
Normal
0.2
451
Tumor
0.2
618
Normal
0.2
412
Normal
0.2
186
Normal
0.2
494
Normal
0.2
267
Tumor
0.2
462
Normal
0.2
286
Normal
0.2
452
Normal
0.2
448
Normal
0.2
132
Normal
0.2
376
Normal
0.2
172
Normal
0.2
818
Normal
0.2
918
Normal
0.2
874
Normal
0.2
361
Tumor
0.2
686
Normal
0.2
756
Normal
0.2
546
Normal
0.2
574
Normal
0.2
695
Tumor
0.2
342
Normal
0.2
964
Normal
0.2
922
Normal
0.2
924
Normal
0.2
443
Tumor
0.2
866
Normal
0.2
884
Normal
0.2
938
Normal
0.2
228
Normal
0.2
926
Normal
0.2
145
Tumor
0.2
128
Normal
0.2
518
Normal
0.2
952
Normal
0.2
944
Normal
0.2
852
Normal
0.2
394
Normal
0.2
785
Tumor
0.2
196
Normal
0.2
647
Tumor
0.2
222
Normal
0.2
1046
Normal
0.2
111
Normal
0.2
666
Normal
0.2
628
Normal
0.2
1043
Tumor
0.2
384
Normal
0.1
232
Normal
0.1
482
Normal
0.1
528
Normal
0.1
921
Tumor
0.1
723
Tumor
0.1
1022
Normal
0.1
916
Normal
0.1
344
Normal
0.1
135
Tumor
0.1
114
Normal
0.1
1042
Normal
0.1
268
Normal
0.1
146
Normal
0.1
563
Tumor
0.1
474
Normal
0.1
635
Tumor
0.1
354
Normal
0.1
642
Normal
0.1
332
Normal
0.1
136
Normal
0.1
978
Normal
0.1
466
Normal
0.1
1016
Normal
0.1
432
Normal
0.1
416
Normal
0.1
537
Tumor
0.1
713
Tumor
0.1
257
Tumor
0.1
366
Normal
0.1
714
Normal
0.1
446
Normal
0.1
951
Tumor
0.1
478
Normal
0.1
664
Normal
0.1
468
Normal
0.1
488
Normal
0.1
431
Tumor
0.1
363
Tumor
0.1
142
Normal
0.1
955
Tumor
0.0
362
Normal
0.0
364
Normal
0.0
356
Normal
0.0
746
Normal
0.0
352
Normal
0.0
492
Normal
0.0
816
Normal
0.0
387
Tumor
0.0
516
Normal
0.0
984
Normal
0.0
218
Normal
0.0
878
Normal
0.0
258
Normal
0.0
138
Normal
0.0
716
Normal
0.0
572
Normal
0.0
214
Normal
0.0
744
Normal
0.0
558
Normal
0.0
393
Tumor
0.0
415
Tumor
0.0
868
Normal
0.0
1028
Normal
0.0
312
Normal
0.0
851
Tumor
0.0
427
Tumor
0.0
425
Tumor
0.0
923
Tumor
0.0
464
Normal
0.0
124
Normal
0.0
498
Normal
0.0
1044
Normal
0.0
662
Normal
0.0
914
Normal
0.0
188
Normal
0.0
1045
Tumor
0.0
966
Normal
0.0
391
Tumor
-0.1
956
Normal
-0.1
388
Normal
-0.1
367
Tumor
-0.1
722
Normal
-0.1
696
Normal
-0.1
386
Normal
-0.1
435
Tumor
-0.1
697
Tumor
-0.1
778
Normal
-0.1
481
Tumor
-0.1
823
Tumor
-0.1
553
Tumor
-0.1
976
Normal
-0.1
672
Normal
-0.1
456
Normal
-0.1
953
Tumor
-0.1
261
Tumor
-0.1
968
Normal
-0.1
112
Tumor
-0.1
396
Normal
-0.1
313
Tumor
-0.1
262
Normal
-0.1
983
Tumor
-0.1
525
Tumor
-0.1
191
Tumor
-0.1
355
Tumor
-0.1
573
Tumor
-0.1
123
Tumor
-0.1
861
Tumor
-0.1
867
Tumor
-0.1
685
Tumor
-0.1
353
Tumor
-0.1
493
Tumor
-0.2
368
Normal
-0.2
958
Normal
-0.2
483
Tumor
-0.2
444
Normal
-0.2
192
Normal
-0.2
413
Tumor
-0.2
715
Tumor
-0.2
515
Tumor
-0.2
554
Normal
-0.2
126
Normal
-0.2
185
Tumor
-0.2
327
Tumor
-0.2
297
Tumor
-0.2
538
Normal
-0.2
272
Normal
-0.2
147
Tumor
-0.2
217
Tumor
-0.2
473
Tumor
-0.2
1013
Tumor
-0.3
195
Tumor
-0.3
917
Tumor
-0.3
434
Normal
-0.3
491
Tumor
-0.3
221
Tumor
-0.3
721
Tumor
-0.3
1015
Tumor
-0.3
213
Tumor
-0.3
471
Tumor
-0.3
171
Tumor
-0.3
1021
Tumor
-0.3
271
Tumor
-0.3
1031
Tumor
-0.4
814
Normal
-0.4
357
Tumor
-0.4
777
Tumor
-0.4
813
Tumor
-0.4
461
Tumor
-0.4
433
Tumor
-0.4
455
Tumor
-0.4
617
Tumor
-0.4
383
Tumor
-0.4
665
Tumor
-0.4
977
Tumor
-0.4
277
Tumor
-0.4
365
Tumor
-0.4
533
Tumor
-0.4
187
Tumor
-0.4
877
Tumor
-0.4
385
Tumor
-0.4
125
Tumor
-0.5
963
Tumor
-0.5
641
Tumor
-0.5
957
Tumor
-0.5
967
Tumor
-0.5
727
Tumor
-0.5
815
Tumor
-0.5
445
Tumor
-0.5
536
Normal
-0.5
487
Tumor
-0.5
965
Tumor
-0.5
343
Tumor
-0.5
395
Tumor
-0.5
447
Tumor
-0.5
467
Tumor
-0.5
943
Tumor
-0.6
535
Tumor
-0.6
161
Tumor
-0.6
141
Tumor
-0.6
517
Tumor
-0.6
137
Tumor
-0.6
375
Tumor
-0.6
737
Tumor
-0.6
671
Tumor
-0.7
881
Tumor
-0.7
331
Tumor
-0.7
724
Normal
-0.7
311
Tumor
-0.7
661
Tumor
-0.7
463
Tumor
-0.7
743
Tumor
-0.7
527
Tumor
-0.7
913
Tumor
-0.7
285
Tumor
-0.8
863
Tumor
-0.8
817
Tumor
-0.8
865
Tumor
-0.8
211
Tumor
-0.8
663
Tumor
-0.8
131
Tumor
-0.9
523
Tumor
-0.9
223
Tumor
-0.9
975
Tumor
-1.0
497
Tumor
-1.0
545
Tumor
-1.0
283
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
