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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DEPP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
89.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1000.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
528.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
425.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
414.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
344.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
341.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
337.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
335.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
286.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
286.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
285.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
284.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
276.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
274.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
266.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
263.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
261.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
252.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
249.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
245.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
243.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
233.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
227.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
226.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
222.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
218.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
207.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
204.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
202.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
201.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
197.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
195.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
194.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
191.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
189.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
188.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
188.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
185.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
180.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
180.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
179.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
177.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
177.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
176.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
174.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
172.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
168.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
167.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
165.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
165.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
161.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
158.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
155.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
154.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
154.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
152.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
152.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
146.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
146.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
146.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
145.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
145.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
144.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
143.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
143.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
142.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
141.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
140.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
140.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
139.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
135.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
134.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
133.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
131.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
131.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
130.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
127.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
123.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
123.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
122.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
121.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
121.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
120.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
119.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
119.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
119.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
119.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
118.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
118.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
114.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
113.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
113.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
112.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
111.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
110.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
110.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
109.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
109.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
108.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
108.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
107.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
107.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
106.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
106.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
104.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
103.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
103.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
102.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
102.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
101.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
101.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
99.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
99.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
98.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
97.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
97.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
97.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
97.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
96.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
96.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
96.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
95.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
95.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
95.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
93.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
93.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
92.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
92.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
92.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
92.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
91.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
91.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
90.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
90.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
90.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
87.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
86.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
85.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
84.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
83.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
82.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
82.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
81.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
81.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
81.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
81.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
81.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
81.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
80.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
80.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
79.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
79.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
79.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
78.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
78.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
78.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
77.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
77.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
76.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
75.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
74.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
74.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
73.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
73.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
72.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
72.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
71.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
71.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
71.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
70.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
70.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
68.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
68.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
67.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
66.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
65.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
65.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
64.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
64.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
64.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
64.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
63.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
63.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
62.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
62.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
61.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
61.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
60.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
60.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
59.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
59.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
59.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
59.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
59.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
58.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
58.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
58.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
57.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
57.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
56.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
56.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
55.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
55.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
54.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
54.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
53.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
53.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
53.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
53.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
52.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
52.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
52.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
52.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
51.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
51.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
51.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
51.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
50.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
50.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
50.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
50.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
49.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
48.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
48.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
47.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
47.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
47.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
46.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
46.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
46.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
46.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
45.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
45.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
45.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
44.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
44.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
44.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
44.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
44.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
43.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
43.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
43.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
43.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
43.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
42.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
42.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
42.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
42.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
42.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
41.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
41.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
41.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
41.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
40.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
40.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
39.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
39.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
38.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
37.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
37.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
37.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
37.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
37.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
36.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
36.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
36.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
35.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
34.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
34.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
34.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
34.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
33.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
33.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
33.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
32.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
32.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
32.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
32.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
32.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
32.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
32.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
31.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
31.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
30.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
30.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
30.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
30.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
29.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
27.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
26.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
26.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
25.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
24.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
23.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
23.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
22.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
22.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
20.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.