MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.4 nTPM
HPA Brain:46.1 nTPM
GTEx:14.4 nTPM
FANTOM5:95.2 Scaled Tags Per Million
Pig:99.6 nTPM
Mouse:24.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 46.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.8
1870 Female, age 42, unknown 53.0
1830 Male, age 51, unknown 50.9
1833 Male, age 53, unknown 44.5
2019 Male, age 18, unknown 43.5
2411 Female, age 72, unknown 43.0
2666 Male, age 74, left hemisphere 31.9
2828 Female, age 72, unknown 31.1
2219 Male, age 76, both hemispheres 27.4
2586 Male, age 75, left hemisphere 27.1
1827 Male, age 72, unknown 25.2
Dorsal raphe nucleus
nTPM: 29.3
2750 Male, age 76, both hemispheres 45.0
2016 Female, age 72, unknown 33.8
1828 Male, age 53, unknown 28.3
2047 Male, age 72, unknown 21.2
2298 Female, age 72, unknown 18.3
Inferior colliculus
nTPM: 27.1
1890 Male, age 53, unknown 29.0
1848 Female, age 42, unknown 28.8
2097 Female, age 72, unknown 26.1
2849 Male, age 72, unknown 24.2
Median raphe nucleus
nTPM: 26.0
2220 Male, age 76, midline 26.0
Periaquaductal grey, anterior
nTPM: 24.8
2502 Female, age 75, unknown 30.0
1947 Male, age 18, unknown 26.9
1795 Male, age 51, unknown 17.5
Periaquaductal grey, dorsal
nTPM: 23.8
2464 Female, age 72, unknown 33.5
1831 Male, age 72, unknown 24.2
2850 Male, age 76, both hemispheres 21.3
1840 Male, age 53, unknown 16.1
Periaquaductal grey, lateral
nTPM: 23.6
2272 Male, age 74, both hemispheres 25.9
2053 Male, age 18, unknown 25.1
2140 Male, age 76, both hemispheres 19.7
Pretectal area
nTPM: 26.1
1815 Male, age 53, unknown 33.0
2316 Male, age 76, right hemisphere 33.0
1817 Female, age 42, unknown 27.3
2273 Male, age 74, both hemispheres 27.2
2407 Male, age 75, both hemispheres 27.1
2007 Male, age 72, unknown 26.5
2825 Male, age 18, unknown 26.2
2667 Female, age 75, unknown 25.5
2224 Female, age 72, unknown 22.8
1944 Female, age 72, unknown 21.2
1816 Male, age 51, unknown 17.2
Red nucleus
nTPM: 46.1
1865 Male, age 51, unknown 57.9
1904 Male, age 53, unknown 57.9
1821 Female, age 72, unknown 57.3
1954 Female, age 42, unknown 52.9
2227 Male, age 72, unknown 50.0
2769 Male, age 72, unknown 48.5
2823 Male, age 76, right hemisphere 46.4
2785 Male, age 18, unknown 45.3
2503 Female, age 72, unknown 45.1
2588 Male, age 74, left hemisphere 31.0
2725 Female, age 75, unknown 30.4
2584 Male, age 75, left hemisphere 30.0
Substantia nigra
nTPM: 29.4
2409 Female, age 72, unknown 33.4
1851 Male, age 51, unknown 32.9
1889 Female, age 72, unknown 32.2
2241 Male, age 72, unknown 31.8
2699 Male, age 18, unknown 30.7
2583 Male, age 75, right hemisphere 30.0
2590 Female, age 75, unknown 28.7
1941 Male, age 53, unknown 27.2
1916 Female, age 42, unknown 24.0
2665 Male, age 74, both hemispheres 23.0
Superior colliculus
nTPM: 32.7
1913 Female, age 42, unknown 53.0
1995 Male, age 72, unknown 46.3
2668 Female, age 75, unknown 38.1
1839 Male, age 51, unknown 34.7
1895 Male, age 76, right hemisphere 32.9
2587 Male, age 74, left hemisphere 32.2
2087 Female, age 72, unknown 23.8
1796 Male, age 53, unknown 23.1
2664 Male, age 75, both hemispheres 22.4
2261 Male, age 18, unknown 20.2
Ventral tegmental area
nTPM: 33.0
2223 Female, age 72, unknown 50.1
2410 Female, age 72, unknown 36.6
2021 Male, age 53, unknown 29.6
1942 Male, age 51, unknown 28.8
1915 Female, age 42, unknown 27.1
2218 Male, age 76, both hemispheres 25.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.4
Samples: 139

Max nTPM: 36.6
Min nTPM: 5.3
Std nTPM: 6.0
Median nTPM: 12.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 36.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 34.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 32.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 31.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 31.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 29.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 28.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 27.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 27.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 25.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 25.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 95.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.2
FF:10158-103A5 76 years, female 95.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 99.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 84.3
Samples: 4

Max nTPM: 125.9
Min nTPM: 65.2
Sample A Female 78.6
Sample B Female 67.6
Sample C Male 65.2
Sample D Male 125.9
Midbrain
nTPM: 99.6
Samples: 4

Max nTPM: 198.3
Min nTPM: 52.2
Sample A Female 198.3
Sample B Female 93.8
Sample C Male 54.1
Sample D Male 52.2
Periaqueductal gray
nTPM: 78.6
Samples: 3

Max nTPM: 93.1
Min nTPM: 68.3
Sample B Female 74.3
Sample C Male 68.3
Sample D Male 93.1
Superior colliculi
nTPM: 71.6
Samples: 4

Max nTPM: 83.6
Min nTPM: 61.5
Sample A Female 71.7
Sample B Female 61.5
Sample C Male 69.5
Sample D Male 83.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.4
Samples: 4

Max nTPM: 26.2
Min nTPM: 22.4
Sample A Male 22.4
Sample B Male 23.3
Sample C Female 25.5
Sample D Female 26.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
633686 Antisense, RP_040907_02_B06, Mouse strain C57BL/6J (56 days, male) 0.2

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