MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.4 nTPM
HPA Brain:39.1 nTPM
GTEx:45.4 nTPM
FANTOM5:41.0 Scaled Tags Per Million
Pig:28.9 nTPM
Mouse:82.8 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 39.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.7
2019 Male, age 18, unknown 40.5
1827 Male, age 72, unknown 38.5
2411 Female, age 72, unknown 35.8
2586 Male, age 75, left hemisphere 33.7
2219 Male, age 76, both hemispheres 31.9
2666 Male, age 74, left hemisphere 31.9
2828 Female, age 72, unknown 31.2
1870 Female, age 42, unknown 30.1
1833 Male, age 53, unknown 26.6
1830 Male, age 51, unknown 26.3
Dorsal raphe nucleus
nTPM: 35.6
2298 Female, age 72, unknown 46.7
1828 Male, age 53, unknown 34.8
2047 Male, age 72, unknown 34.6
2750 Male, age 76, both hemispheres 31.6
2016 Female, age 72, unknown 30.6
Inferior colliculus
nTPM: 31.2
2097 Female, age 72, unknown 36.8
1890 Male, age 53, unknown 31.8
1848 Female, age 42, unknown 31.4
2849 Male, age 72, unknown 24.9
Median raphe nucleus
nTPM: 31.3
2220 Male, age 76, midline 31.3
Periaquaductal grey, anterior
nTPM: 35.0
1947 Male, age 18, unknown 36.8
1795 Male, age 51, unknown 36.6
2502 Female, age 75, unknown 31.5
Periaquaductal grey, dorsal
nTPM: 30.0
1840 Male, age 53, unknown 33.1
1831 Male, age 72, unknown 30.1
2464 Female, age 72, unknown 29.2
2850 Male, age 76, both hemispheres 27.6
Periaquaductal grey, lateral
nTPM: 32.0
2272 Male, age 74, both hemispheres 41.3
2053 Male, age 18, unknown 30.1
2140 Male, age 76, both hemispheres 24.6
Pretectal area
nTPM: 39.1
2273 Male, age 74, both hemispheres 48.5
2007 Male, age 72, unknown 48.4
1816 Male, age 51, unknown 47.4
1817 Female, age 42, unknown 45.6
1944 Female, age 72, unknown 40.4
1815 Male, age 53, unknown 40.0
2667 Female, age 75, unknown 39.9
2224 Female, age 72, unknown 38.3
2316 Male, age 76, right hemisphere 29.8
2825 Male, age 18, unknown 28.1
2407 Male, age 75, both hemispheres 24.0
Red nucleus
nTPM: 31.6
1821 Female, age 72, unknown 38.3
2785 Male, age 18, unknown 36.8
2725 Female, age 75, unknown 35.3
2503 Female, age 72, unknown 32.4
1904 Male, age 53, unknown 31.4
1954 Female, age 42, unknown 30.8
2769 Male, age 72, unknown 30.6
1865 Male, age 51, unknown 30.5
2227 Male, age 72, unknown 30.0
2823 Male, age 76, right hemisphere 30.0
2588 Male, age 74, left hemisphere 28.1
2584 Male, age 75, left hemisphere 24.6
Substantia nigra
nTPM: 34.4
1916 Female, age 42, unknown 45.0
1851 Male, age 51, unknown 39.8
1889 Female, age 72, unknown 39.6
1941 Male, age 53, unknown 36.7
2409 Female, age 72, unknown 34.7
2241 Male, age 72, unknown 31.0
2665 Male, age 74, both hemispheres 31.0
2590 Female, age 75, unknown 29.8
2699 Male, age 18, unknown 29.3
2583 Male, age 75, right hemisphere 27.0
Superior colliculus
nTPM: 32.2
2087 Female, age 72, unknown 37.0
1796 Male, age 53, unknown 35.4
2668 Female, age 75, unknown 34.3
2261 Male, age 18, unknown 33.8
2587 Male, age 74, left hemisphere 33.4
1895 Male, age 76, right hemisphere 32.6
1995 Male, age 72, unknown 31.4
1913 Female, age 42, unknown 30.2
1839 Male, age 51, unknown 29.3
2664 Male, age 75, both hemispheres 24.2
Ventral tegmental area
nTPM: 34.3
2410 Female, age 72, unknown 41.7
1915 Female, age 42, unknown 38.4
2218 Male, age 76, both hemispheres 35.0
2223 Female, age 72, unknown 30.8
1942 Male, age 51, unknown 30.7
2021 Male, age 53, unknown 29.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 45.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.4
Samples: 139

Max nTPM: 95.8
Min nTPM: 27.6
Std nTPM: 10.2
Median nTPM: 43.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 95.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 73.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 70.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 69.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 69.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 67.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 65.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 65.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 64.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 63.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 61.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.0
FF:10158-103A5 76 years, female 41.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 28.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.9
Samples: 4

Max nTPM: 29.3
Min nTPM: 15.3
Sample A Female 29.3
Sample B Female 21.8
Sample C Male 21.0
Sample D Male 15.3
Midbrain
nTPM: 25.3
Samples: 4

Max nTPM: 27.5
Min nTPM: 22.6
Sample A Female 27.5
Sample B Female 22.6
Sample C Male 27.1
Sample D Male 23.8
Periaqueductal gray
nTPM: 21.2
Samples: 3

Max nTPM: 22.1
Min nTPM: 20.1
Sample B Female 21.3
Sample C Male 22.1
Sample D Male 20.1
Superior colliculi
nTPM: 28.9
Samples: 4

Max nTPM: 31.3
Min nTPM: 24.6
Sample A Female 30.0
Sample B Female 31.3
Sample C Male 29.7
Sample D Male 24.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 82.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 82.8
Samples: 4

Max nTPM: 85.4
Min nTPM: 79.6
Sample A Male 81.2
Sample B Male 85.4
Sample C Female 79.6
Sample D Female 84.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
72724 Antisense, RP_040407_01_A06, Mouse strain C57BL/6J (56 days, male) 5.9
74581379 Antisense, RP_051214_01_C04, Mouse strain C57BL/6J (56 days, male) 5.6

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