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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DYNLT3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
49.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
49.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
47.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
46.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
45.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
41.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
39.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
38.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
38.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
37.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
35.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
34.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
34.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
34.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
33.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
33.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
32.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
30.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
29.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
29.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
28.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
28.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
24.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
23.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
22.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
20.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
16.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DYNLT3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.5
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
52.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
51.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
51.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
51.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
43.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
40.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
37.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
37.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
36.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
35.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
35.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
34.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
34.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
33.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
33.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
32.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
30.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
29.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
28.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
28.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
28.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
27.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
26.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
26.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
25.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
24.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
22.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
21.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
20.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
727
Tumor
7.3
737
Tumor
6.7
744
Normal
6.7
724
Normal
6.3
743
Tumor
3.7
738
Normal
3.6
728
Normal
2.9
473
Tumor
1.1
685
Tumor
1.1
283
Tumor
1.0
471
Tumor
1.0
375
Tumor
0.9
257
Tumor
0.9
1021
Tumor
0.9
537
Tumor
0.9
527
Tumor
0.8
285
Tumor
0.8
355
Tumor
0.8
1027
Tumor
0.8
1013
Tumor
0.7
925
Tumor
0.7
715
Tumor
0.7
953
Tumor
0.7
147
Tumor
0.7
367
Tumor
0.7
883
Tumor
0.6
851
Tumor
0.6
455
Tumor
0.6
523
Tumor
0.6
965
Tumor
0.6
823
Tumor
0.6
815
Tumor
0.6
545
Tumor
0.6
923
Tumor
0.6
661
Tumor
0.5
365
Tumor
0.5
261
Tumor
0.5
1043
Tumor
0.5
223
Tumor
0.5
185
Tumor
0.5
366
Normal
0.5
911
Tumor
0.5
975
Tumor
0.5
361
Tumor
0.5
943
Tumor
0.5
363
Tumor
0.5
963
Tumor
0.5
472
Normal
0.5
445
Tumor
0.5
474
Normal
0.5
981
Tumor
0.4
483
Tumor
0.4
411
Tumor
0.4
865
Tumor
0.4
745
Tumor
0.4
957
Tumor
0.4
311
Tumor
0.4
171
Tumor
0.4
351
Tumor
0.4
383
Tumor
0.3
913
Tumor
0.3
227
Tumor
0.3
376
Normal
0.3
567
Tumor
0.3
881
Tumor
0.3
161
Tumor
0.3
533
Tumor
0.3
917
Tumor
0.3
983
Tumor
0.3
213
Tumor
0.3
425
Tumor
0.3
755
Tumor
0.2
491
Tumor
0.2
493
Tumor
0.2
937
Tumor
0.2
557
Tumor
0.2
427
Tumor
0.2
187
Tumor
0.2
415
Tumor
0.2
313
Tumor
0.2
421
Tumor
0.2
1031
Tumor
0.2
921
Tumor
0.2
525
Tumor
0.2
362
Normal
0.2
697
Tumor
0.2
461
Tumor
0.2
671
Tumor
0.2
513
Tumor
0.2
861
Tumor
0.2
497
Tumor
0.2
857
Tumor
0.2
431
Tumor
0.2
211
Tumor
0.2
327
Tumor
0.2
1041
Tumor
0.2
214
Normal
0.2
977
Tumor
0.1
813
Tumor
0.1
343
Tumor
0.1
647
Tumor
0.1
492
Normal
0.1
192
Normal
0.1
515
Tumor
0.1
538
Normal
0.1
877
Tumor
0.1
195
Tumor
0.1
297
Tumor
0.1
218
Normal
0.0
777
Tumor
0.0
817
Tumor
0.0
878
Normal
0.0
1025
Tumor
0.0
952
Normal
0.0
553
Tumor
0.0
487
Tumor
0.0
357
Tumor
0.0
873
Tumor
0.0
516
Normal
0.0
186
Normal
0.0
915
Tumor
0.0
695
Tumor
0.0
217
Tumor
0.0
741
Tumor
0.0
536
Normal
0.0
785
Tumor
0.0
125
Tumor
0.0
518
Normal
0.0
231
Tumor
0.0
514
Normal
0.0
477
Tumor
-0.1
344
Normal
-0.1
172
Normal
-0.1
188
Normal
-0.1
517
Tumor
-0.1
412
Normal
-0.1
526
Normal
-0.1
481
Tumor
-0.1
341
Tumor
-0.1
148
Normal
-0.1
1045
Tumor
-0.1
914
Normal
-0.1
443
Tumor
-0.2
435
Tumor
-0.2
924
Normal
-0.2
222
Normal
-0.2
368
Normal
-0.2
162
Normal
-0.2
277
Tumor
-0.2
447
Tumor
-0.2
463
Tumor
-0.2
1028
Normal
-0.2
196
Normal
-0.2
721
Tumor
-0.2
951
Tumor
-0.2
535
Tumor
-0.2
713
Tumor
-0.2
956
Normal
-0.2
966
Normal
-0.2
554
Normal
-0.2
488
Normal
-0.2
484
Normal
-0.2
342
Normal
-0.2
212
Normal
-0.3
524
Normal
-0.3
722
Normal
-0.3
874
Normal
-0.3
528
Normal
-0.3
955
Tumor
-0.3
1026
Normal
-0.3
867
Tumor
-0.3
228
Normal
-0.3
573
Tumor
-0.3
714
Normal
-0.3
286
Normal
-0.4
498
Normal
-0.4
478
Normal
-0.4
778
Normal
-0.4
814
Normal
-0.4
434
Normal
-0.4
696
Normal
-0.4
312
Normal
-0.4
331
Tumor
-0.4
364
Normal
-0.4
271
Tumor
-0.4
546
Normal
-0.4
467
Tumor
-0.4
662
Normal
-0.4
494
Normal
-0.4
534
Normal
-0.4
298
Normal
-0.4
446
Normal
-0.5
433
Tumor
-0.5
448
Normal
-0.5
353
Tumor
-0.5
982
Normal
-0.5
284
Normal
-0.5
416
Normal
-0.5
328
Normal
-0.5
358
Normal
-0.5
423
Tumor
-0.5
816
Normal
-0.5
384
Normal
-0.5
976
Normal
-0.5
452
Normal
-0.5
716
Normal
-0.5
413
Tumor
-0.5
272
Normal
-0.5
268
Normal
-0.5
278
Normal
-0.6
967
Tumor
-0.6
663
Tumor
-0.6
224
Normal
-0.6
863
Tumor
-0.6
968
Normal
-0.6
1015
Tumor
-0.6
352
Normal
-0.6
686
Normal
-0.7
267
Tumor
-0.7
221
Tumor
-0.7
465
Tumor
-0.7
436
Normal
-0.7
258
Normal
-0.7
462
Normal
-0.7
864
Normal
-0.7
354
Normal
-0.7
444
Normal
-0.7
314
Normal
-0.7
262
Normal
-0.7
356
Normal
-0.7
332
Normal
-0.7
958
Normal
-0.7
852
Normal
-0.7
191
Tumor
-0.8
123
Tumor
-0.8
232
Normal
-0.8
862
Normal
-0.8
882
Normal
-0.8
665
Tumor
-0.8
451
Tumor
-0.8
456
Normal
-0.8
866
Normal
-0.8
746
Normal
-0.8
432
Normal
-0.8
127
Tumor
-0.8
756
Normal
-0.8
964
Normal
-0.8
918
Normal
-0.9
786
Normal
-0.9
698
Normal
-0.9
128
Normal
-0.9
124
Normal
-0.9
422
Normal
-0.9
664
Normal
-1.0
916
Normal
-1.0
648
Normal
-1.0
868
Normal
-1.0
464
Normal
-1.0
111
Normal
-1.0
1032
Normal
-1.0
672
Normal
-1.0
922
Normal
-1.0
742
Normal
-1.0
482
Normal
-1.0
466
Normal
-1.0
617
Tumor
-1.1
468
Normal
-1.1
912
Normal
-1.1
635
Tumor
-1.1
858
Normal
-1.1
1022
Normal
-1.1
666
Normal
-1.2
938
Normal
-1.2
884
Normal
-1.2
112
Tumor
-1.2
1016
Normal
-1.2
818
Normal
-1.2
1046
Normal
-1.2
944
Normal
-1.2
574
Normal
-1.2
1042
Normal
-1.2
824
Normal
-1.2
984
Normal
-1.3
564
Normal
-1.3
563
Tumor
-1.3
568
Normal
-1.3
126
Normal
-1.3
1044
Normal
-1.3
426
Normal
-1.3
926
Normal
-1.4
114
Normal
-1.4
1014
Normal
-1.4
723
Tumor
-1.4
424
Normal
-1.4
558
Normal
-1.4
113
Tumor
-1.4
615
Tumor
-1.4
428
Normal
-1.5
572
Normal
-1.5
978
Normal
-1.7
954
Normal
-1.7
571
Tumor
-1.8
641
Tumor
-1.8
642
Normal
-1.9
414
Normal
-1.9
616
Normal
-2.2
627
Tumor
-2.2
636
Normal
-2.2
628
Normal
-2.2
618
Normal
-2.3
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
388
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
