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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBAP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
77.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
59.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
54.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
52.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
45.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
44.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
44.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
43.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
40.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
40.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
40.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
39.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
38.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
38.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
37.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
37.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
37.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
36.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
36.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
36.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
36.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
35.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
35.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
35.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
34.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
33.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
33.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
33.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
33.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
33.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
32.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
32.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
32.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
32.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
31.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
31.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
31.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
31.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
31.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
31.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
30.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
30.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
30.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
30.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
30.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
30.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
30.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
29.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
29.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
29.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
28.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
27.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
27.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
27.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
26.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
26.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
25.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
24.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
22.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
22.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
22.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
20.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
18.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
17.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBAP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.3
Number of samples
231
Samples
Sample
Description
TPM
DO48701
0 years, male, NA, stage:2, alive, 780 days
80.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
46.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
45.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
43.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
42.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
40.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
39.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
39.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
37.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
36.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
36.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
35.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
35.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
34.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
34.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
34.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
32.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
32.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
32.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
32.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
32.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
31.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
31.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
31.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
29.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
29.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
29.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
29.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
29.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
29.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
28.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
28.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
28.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
28.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
28.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
28.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
27.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
27.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
27.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
24.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
22.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.1
865
Tumor
0.7
147
Tumor
0.7
1021
Tumor
0.6
1043
Tumor
0.6
533
Tumor
0.6
937
Tumor
0.6
817
Tumor
0.5
123
Tumor
0.5
881
Tumor
0.5
977
Tumor
0.5
131
Tumor
0.5
537
Tumor
0.5
745
Tumor
0.5
663
Tumor
0.5
536
Normal
0.5
1027
Tumor
0.5
427
Tumor
0.4
697
Tumor
0.4
487
Tumor
0.4
327
Tumor
0.4
535
Tumor
0.4
463
Tumor
0.4
523
Tumor
0.4
517
Tumor
0.4
851
Tumor
0.4
518
Normal
0.4
882
Normal
0.4
921
Tumor
0.4
497
Tumor
0.4
943
Tumor
0.3
957
Tumor
0.3
573
Tumor
0.3
737
Tumor
0.3
257
Tumor
0.3
1025
Tumor
0.3
884
Normal
0.3
363
Tumor
0.3
477
Tumor
0.3
484
Normal
0.3
868
Normal
0.3
824
Normal
0.3
727
Tumor
0.3
913
Tumor
0.3
553
Tumor
0.3
862
Normal
0.3
823
Tumor
0.3
696
Normal
0.3
447
Tumor
0.3
858
Normal
0.3
462
Normal
0.3
967
Tumor
0.3
375
Tumor
0.3
515
Tumor
0.2
746
Normal
0.2
818
Normal
0.2
125
Tumor
0.2
852
Normal
0.2
493
Tumor
0.2
313
Tumor
0.2
912
Normal
0.2
728
Normal
0.2
411
Tumor
0.2
861
Tumor
0.2
425
Tumor
0.2
918
Normal
0.2
415
Tumor
0.2
956
Normal
0.2
498
Normal
0.2
955
Tumor
0.2
953
Tumor
0.2
545
Tumor
0.2
1014
Normal
0.2
714
Normal
0.2
141
Tumor
0.2
866
Normal
0.2
742
Normal
0.2
877
Tumor
0.2
926
Normal
0.2
964
Normal
0.2
938
Normal
0.2
713
Tumor
0.2
864
Normal
0.2
171
Tumor
0.2
968
Normal
0.2
981
Tumor
0.2
491
Tumor
0.2
514
Normal
0.2
966
Normal
0.2
494
Normal
0.2
482
Normal
0.2
416
Normal
0.2
944
Normal
0.2
954
Normal
0.2
965
Tumor
0.2
1046
Normal
0.2
914
Normal
0.2
516
Normal
0.2
716
Normal
0.2
863
Tumor
0.2
451
Tumor
0.2
472
Normal
0.2
978
Normal
0.2
525
Tumor
0.2
524
Normal
0.2
724
Normal
0.2
816
Normal
0.2
723
Tumor
0.1
488
Normal
0.1
721
Tumor
0.1
483
Tumor
0.1
958
Normal
0.1
492
Normal
0.1
448
Normal
0.1
922
Normal
0.1
474
Normal
0.1
364
Normal
0.1
952
Normal
0.1
911
Tumor
0.1
744
Normal
0.1
528
Normal
0.1
1022
Normal
0.1
915
Tumor
0.1
446
Normal
0.1
975
Tumor
0.1
286
Normal
0.1
464
Normal
0.1
142
Normal
0.1
1016
Normal
0.1
534
Normal
0.1
1026
Normal
0.1
527
Tumor
0.1
743
Tumor
0.1
526
Normal
0.1
283
Tumor
0.1
412
Normal
0.1
951
Tumor
0.1
461
Tumor
0.1
161
Tumor
0.1
112
Tumor
0.1
874
Normal
0.1
738
Normal
0.1
982
Normal
0.1
212
Normal
0.1
777
Tumor
0.1
976
Normal
0.1
617
Tumor
0.1
698
Normal
0.1
916
Normal
0.1
145
Tumor
0.1
356
Normal
0.1
221
Tumor
0.1
268
Normal
0.1
465
Tumor
0.1
162
Normal
0.1
878
Normal
0.1
222
Normal
0.1
558
Normal
0.1
434
Normal
0.1
722
Normal
0.1
924
Normal
0.1
1015
Tumor
0.1
641
Tumor
0.1
1032
Normal
0.1
984
Normal
0.1
857
Tumor
0.1
138
Normal
0.1
284
Normal
0.1
554
Normal
0.1
666
Normal
0.0
355
Tumor
0.0
444
Normal
0.0
428
Normal
0.0
258
Normal
0.0
1028
Normal
0.0
473
Tumor
0.0
227
Tumor
0.0
574
Normal
0.0
217
Tumor
0.0
228
Normal
0.0
343
Tumor
0.0
353
Tumor
0.0
741
Tumor
0.0
191
Tumor
0.0
627
Tumor
0.0
478
Normal
0.0
424
Normal
0.0
146
Normal
0.0
1042
Normal
0.0
786
Normal
0.0
686
Normal
0.0
384
Normal
0.0
546
Normal
0.0
386
Normal
0.0
648
Normal
0.0
923
Tumor
0.0
664
Normal
0.0
272
Normal
0.0
312
Normal
0.0
136
Normal
0.0
618
Normal
0.0
328
Normal
0.0
192
Normal
0.0
285
Tumor
0.0
392
Normal
0.0
298
Normal
0.0
538
Normal
0.0
647
Tumor
0.0
132
Normal
0.0
468
Normal
0.0
362
Normal
0.0
452
Normal
0.0
568
Normal
0.0
642
Normal
0.0
358
Normal
0.0
471
Tumor
0.0
426
Normal
0.0
695
Tumor
0.0
314
Normal
0.0
456
Normal
0.0
571
Tumor
0.0
756
Normal
0.0
572
Normal
0.0
224
Normal
0.0
232
Normal
0.0
963
Tumor
0.0
466
Normal
0.0
277
Tumor
-0.1
383
Tumor
-0.1
278
Normal
-0.1
557
Tumor
-0.1
218
Normal
-0.1
196
Normal
-0.1
423
Tumor
-0.1
778
Normal
-0.1
917
Tumor
-0.1
1031
Tumor
-0.1
223
Tumor
-0.1
436
Normal
-0.1
211
Tumor
-0.1
481
Tumor
-0.1
685
Tumor
-0.1
213
Tumor
-0.1
414
Normal
-0.1
925
Tumor
-0.1
867
Tumor
-0.1
195
Tumor
-0.1
615
Tumor
-0.1
368
Normal
-0.1
365
Tumor
-0.1
394
Normal
-0.1
1041
Tumor
-0.1
1044
Normal
-0.1
388
Normal
-0.1
128
Normal
-0.1
873
Tumor
-0.1
715
Tumor
-0.1
262
Normal
-0.1
814
Normal
-0.1
137
Tumor
-0.1
433
Tumor
-0.1
467
Tumor
-0.1
672
Normal
-0.1
385
Tumor
-0.1
635
Tumor
-0.1
111
Normal
-0.1
344
Normal
-0.1
352
Normal
-0.1
376
Normal
-0.1
311
Tumor
-0.2
815
Tumor
-0.2
662
Normal
-0.2
366
Normal
-0.2
422
Normal
-0.2
354
Normal
-0.2
432
Normal
-0.2
114
Normal
-0.2
396
Normal
-0.2
186
Normal
-0.2
214
Normal
-0.2
113
Tumor
-0.2
628
Normal
-0.2
148
Normal
-0.2
126
Normal
-0.2
636
Normal
-0.2
755
Tumor
-0.2
172
Normal
-0.2
413
Tumor
-0.2
188
Normal
-0.2
332
Normal
-0.2
883
Tumor
-0.2
513
Tumor
-0.2
1045
Tumor
-0.2
616
Normal
-0.2
267
Tumor
-0.2
342
Normal
-0.2
124
Normal
-0.2
661
Tumor
-0.2
563
Tumor
-0.2
564
Normal
-0.3
231
Tumor
-0.3
421
Tumor
-0.3
187
Tumor
-0.3
983
Tumor
-0.3
785
Tumor
-0.3
331
Tumor
-0.3
813
Tumor
-0.3
271
Tumor
-0.3
393
Tumor
-0.3
455
Tumor
-0.4
431
Tumor
-0.4
395
Tumor
-0.4
135
Tumor
-0.4
445
Tumor
-0.4
297
Tumor
-0.4
361
Tumor
-0.4
357
Tumor
-0.5
261
Tumor
-0.5
671
Tumor
-0.5
185
Tumor
-0.5
665
Tumor
-0.5
341
Tumor
-0.5
391
Tumor
-0.5
387
Tumor
-0.6
567
Tumor
-0.6
367
Tumor
-0.6
127
Tumor
-0.6
351
Tumor
-0.7
443
Tumor
-0.7
435
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
