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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OXR1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
53.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
32.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
31.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
20.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OXR1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.3
Number of samples
231
Samples
Sample
Description
TPM
DO50811
0 years, male, NA, stage:1, alive, 450 days
77.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
53.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
50.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
44.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
43.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
40.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
40.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
36.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
34.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
34.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
34.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
34.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
33.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
32.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
32.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
32.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
32.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
32.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
31.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
30.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
28.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
915
Tumor
1.5
471
Tumor
1.3
951
Tumor
1.1
557
Tumor
1.1
867
Tumor
1.0
271
Tumor
1.0
641
Tumor
0.9
445
Tumor
0.9
963
Tumor
0.8
553
Tumor
0.8
1031
Tumor
0.7
967
Tumor
0.6
221
Tumor
0.6
975
Tumor
0.6
313
Tumor
0.6
357
Tumor
0.5
477
Tumor
0.5
981
Tumor
0.5
1043
Tumor
0.5
341
Tumor
0.5
921
Tumor
0.5
416
Normal
0.5
415
Tumor
0.4
353
Tumor
0.4
863
Tumor
0.4
473
Tumor
0.4
663
Tumor
0.4
1041
Tumor
0.4
952
Normal
0.4
977
Tumor
0.4
424
Normal
0.4
1025
Tumor
0.4
746
Normal
0.4
823
Tumor
0.4
716
Normal
0.4
965
Tumor
0.4
481
Tumor
0.3
364
Normal
0.3
868
Normal
0.3
698
Normal
0.3
918
Normal
0.3
312
Normal
0.3
493
Tumor
0.3
696
Normal
0.3
944
Normal
0.3
422
Normal
0.3
421
Tumor
0.3
714
Normal
0.3
964
Normal
0.3
451
Tumor
0.3
482
Normal
0.3
257
Tumor
0.3
924
Normal
0.3
916
Normal
0.3
554
Normal
0.3
938
Normal
0.3
277
Tumor
0.3
1013
Tumor
0.3
861
Tumor
0.3
1022
Normal
0.3
648
Normal
0.3
223
Tumor
0.3
426
Normal
0.3
533
Tumor
0.3
911
Tumor
0.3
488
Normal
0.3
738
Normal
0.3
628
Normal
0.3
728
Normal
0.3
786
Normal
0.3
722
Normal
0.3
515
Tumor
0.3
472
Normal
0.3
466
Normal
0.3
955
Tumor
0.3
617
Tumor
0.3
484
Normal
0.3
721
Tumor
0.3
1042
Normal
0.3
984
Normal
0.3
744
Normal
0.2
756
Normal
0.2
616
Normal
0.2
715
Tumor
0.2
777
Tumor
0.2
956
Normal
0.2
314
Normal
0.2
1044
Normal
0.2
231
Tumor
0.2
428
Normal
0.2
958
Normal
0.2
328
Normal
0.2
968
Normal
0.2
278
Normal
0.2
884
Normal
0.2
537
Tumor
0.2
514
Normal
0.2
873
Tumor
0.2
954
Normal
0.2
354
Normal
0.2
912
Normal
0.2
976
Normal
0.2
778
Normal
0.2
517
Tumor
0.2
456
Normal
0.2
494
Normal
0.2
546
Normal
0.2
966
Normal
0.2
723
Tumor
0.2
926
Normal
0.2
742
Normal
0.2
342
Normal
0.2
356
Normal
0.2
922
Normal
0.2
755
Tumor
0.2
572
Normal
0.2
618
Normal
0.2
464
Normal
0.2
487
Tumor
0.2
435
Tumor
0.2
862
Normal
0.2
396
Normal
0.2
298
Normal
0.2
881
Tumor
0.2
882
Normal
0.2
568
Normal
0.2
818
Normal
0.2
516
Normal
0.2
436
Normal
0.2
443
Tumor
0.2
483
Tumor
0.2
462
Normal
0.2
474
Normal
0.2
414
Normal
0.2
1046
Normal
0.1
478
Normal
0.1
147
Tumor
0.1
446
Normal
0.1
162
Normal
0.1
1016
Normal
0.1
518
Normal
0.1
878
Normal
0.1
222
Normal
0.1
1014
Normal
0.1
528
Normal
0.1
824
Normal
0.1
1032
Normal
0.1
191
Tumor
0.1
132
Normal
0.1
978
Normal
0.1
261
Tumor
0.1
412
Normal
0.1
431
Tumor
0.1
362
Normal
0.1
883
Tumor
0.1
813
Tumor
0.1
128
Normal
0.1
914
Normal
0.1
558
Normal
0.1
636
Normal
0.1
816
Normal
0.1
724
Normal
0.1
1021
Tumor
0.1
214
Normal
0.1
386
Normal
0.1
444
Normal
0.1
148
Normal
0.1
877
Tumor
0.1
524
Normal
0.1
172
Normal
0.1
525
Tumor
0.1
498
Normal
0.1
534
Normal
0.1
864
Normal
0.1
866
Normal
0.1
564
Normal
0.1
982
Normal
0.1
874
Normal
0.1
672
Normal
0.1
283
Tumor
0.1
635
Tumor
0.1
497
Tumor
0.1
384
Normal
0.1
1028
Normal
0.1
358
Normal
0.1
527
Tumor
0.1
196
Normal
0.1
664
Normal
0.1
737
Tumor
0.1
642
Normal
0.1
574
Normal
0.1
212
Normal
0.0
957
Tumor
0.0
332
Normal
0.0
857
Tumor
0.0
136
Normal
0.0
388
Normal
0.0
662
Normal
0.0
258
Normal
0.0
858
Normal
0.0
448
Normal
0.0
311
Tumor
0.0
284
Normal
0.0
286
Normal
0.0
865
Tumor
0.0
686
Normal
0.0
228
Normal
0.0
685
Tumor
0.0
135
Tumor
0.0
526
Normal
0.0
232
Normal
0.0
268
Normal
0.0
513
Tumor
0.0
186
Normal
0.0
468
Normal
0.0
218
Normal
0.0
192
Normal
0.0
432
Normal
0.0
394
Normal
0.0
523
Tumor
0.0
452
Normal
0.0
785
Tumor
0.0
142
Normal
0.0
491
Tumor
0.0
538
Normal
0.0
376
Normal
0.0
923
Tumor
0.0
267
Tumor
-0.1
272
Normal
-0.1
536
Normal
-0.1
114
Normal
-0.1
461
Tumor
-0.1
1026
Normal
-0.1
352
Normal
-0.1
433
Tumor
-0.1
666
Normal
-0.1
126
Normal
-0.1
392
Normal
-0.1
492
Normal
-0.1
817
Tumor
-0.1
188
Normal
-0.1
814
Normal
-0.1
146
Normal
-0.1
111
Normal
-0.1
262
Normal
-0.1
697
Tumor
-0.1
331
Tumor
-0.1
366
Normal
-0.1
463
Tumor
-0.1
297
Tumor
-0.1
138
Normal
-0.1
695
Tumor
-0.1
195
Tumor
-0.1
745
Tumor
-0.1
224
Normal
-0.1
852
Normal
-0.1
395
Tumor
-0.1
127
Tumor
-0.1
434
Normal
-0.1
465
Tumor
-0.2
567
Tumor
-0.2
124
Normal
-0.2
953
Tumor
-0.2
161
Tumor
-0.2
344
Normal
-0.2
185
Tumor
-0.2
1015
Tumor
-0.2
455
Tumor
-0.2
285
Tumor
-0.2
423
Tumor
-0.2
355
Tumor
-0.2
925
Tumor
-0.2
563
Tumor
-0.2
1045
Tumor
-0.2
123
Tumor
-0.3
545
Tumor
-0.3
361
Tumor
-0.3
327
Tumor
-0.3
571
Tumor
-0.3
217
Tumor
-0.3
427
Tumor
-0.3
917
Tumor
-0.3
145
Tumor
-0.3
943
Tumor
-0.3
368
Normal
-0.3
411
Tumor
-0.3
383
Tumor
-0.3
141
Tumor
-0.3
615
Tumor
-0.3
213
Tumor
-0.3
727
Tumor
-0.3
112
Tumor
-0.4
425
Tumor
-0.4
1027
Tumor
-0.4
375
Tumor
-0.4
131
Tumor
-0.4
983
Tumor
-0.4
743
Tumor
-0.4
447
Tumor
-0.4
741
Tumor
-0.5
343
Tumor
-0.5
627
Tumor
-0.5
413
Tumor
-0.5
137
Tumor
-0.5
851
Tumor
-0.5
937
Tumor
-0.5
665
Tumor
-0.5
391
Tumor
-0.5
351
Tumor
-0.5
211
Tumor
-0.5
467
Tumor
-0.6
913
Tumor
-0.6
387
Tumor
-0.6
171
Tumor
-0.6
187
Tumor
-0.6
125
Tumor
-0.6
671
Tumor
-0.6
661
Tumor
-0.6
535
Tumor
-0.7
113
Tumor
-0.7
227
Tumor
-0.7
393
Tumor
-0.7
365
Tumor
-0.7
713
Tumor
-0.7
647
Tumor
-0.7
573
Tumor
-0.8
385
Tumor
-0.8
367
Tumor
-0.8
363
Tumor
-0.9
815
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
