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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
169.6
nTPM
HPA Brain:
158.2
nTPM
GTEx:
169.6
nTPM
FANTOM5:
322.1
Scaled Tags Per Million
Pig:
196.4
nTPM
Mouse:
256.8
nTPM
Allen mouse:
21.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
158.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 115.5
2666
Male, age 74, left hemisphere
132.0
2586
Male, age 75, left hemisphere
126.2
1833
Male, age 53, unknown
119.1
2828
Female, age 72, unknown
118.8
1870
Female, age 42, unknown
117.3
2019
Male, age 18, unknown
116.4
2411
Female, age 72, unknown
115.9
1830
Male, age 51, unknown
114.2
1827
Male, age 72, unknown
110.3
2219
Male, age 76, both hemispheres
84.6
Dorsal raphe nucleus nTPM: 138.0
2298
Female, age 72, unknown
171.0
2016
Female, age 72, unknown
141.0
2047
Male, age 72, unknown
139.6
1828
Male, age 53, unknown
130.4
2750
Male, age 76, both hemispheres
107.9
Inferior colliculus nTPM: 130.1
1890
Male, age 53, unknown
139.4
2097
Female, age 72, unknown
138.1
1848
Female, age 42, unknown
129.4
2849
Male, age 72, unknown
113.7
Median raphe nucleus nTPM: 116.0
2220
Male, age 76, midline
116.0
Periaquaductal grey, anterior nTPM: 135.0
1947
Male, age 18, unknown
156.7
1795
Male, age 51, unknown
135.1
2502
Female, age 75, unknown
113.2
Periaquaductal grey, dorsal nTPM: 123.8
1831
Male, age 72, unknown
133.7
1840
Male, age 53, unknown
128.3
2850
Male, age 76, both hemispheres
123.1
2464
Female, age 72, unknown
110.0
Periaquaductal grey, lateral nTPM: 135.5
2272
Male, age 74, both hemispheres
161.2
2140
Male, age 76, both hemispheres
129.7
2053
Male, age 18, unknown
115.7
Pretectal area nTPM: 125.9
2407
Male, age 75, both hemispheres
175.7
2273
Male, age 74, both hemispheres
156.6
2224
Female, age 72, unknown
141.5
2825
Male, age 18, unknown
119.9
1817
Female, age 42, unknown
119.8
1944
Female, age 72, unknown
116.7
1816
Male, age 51, unknown
113.9
2667
Female, age 75, unknown
113.7
2007
Male, age 72, unknown
112.4
2316
Male, age 76, right hemisphere
111.7
1815
Male, age 53, unknown
103.1
Red nucleus nTPM: 117.6
2584
Male, age 75, left hemisphere
145.0
2725
Female, age 75, unknown
134.0
2227
Male, age 72, unknown
128.9
2785
Male, age 18, unknown
127.9
1954
Female, age 42, unknown
127.3
2769
Male, age 72, unknown
125.4
1904
Male, age 53, unknown
116.9
1865
Male, age 51, unknown
114.3
1821
Female, age 72, unknown
110.4
2503
Female, age 72, unknown
107.2
2823
Male, age 76, right hemisphere
93.9
2588
Male, age 74, left hemisphere
79.8
Substantia nigra nTPM: 158.2
1916
Female, age 42, unknown
207.7
2590
Female, age 75, unknown
196.7
2583
Male, age 75, right hemisphere
177.7
1851
Male, age 51, unknown
168.0
1941
Male, age 53, unknown
153.9
2665
Male, age 74, both hemispheres
153.0
2699
Male, age 18, unknown
143.9
2241
Male, age 72, unknown
140.3
1889
Female, age 72, unknown
124.3
2409
Female, age 72, unknown
116.4
Superior colliculus nTPM: 121.8
2664
Male, age 75, both hemispheres
155.9
2587
Male, age 74, left hemisphere
137.2
1995
Male, age 72, unknown
132.2
2087
Female, age 72, unknown
130.0
1796
Male, age 53, unknown
125.0
2261
Male, age 18, unknown
119.9
1839
Male, age 51, unknown
114.6
1913
Female, age 42, unknown
113.5
2668
Female, age 75, unknown
106.7
1895
Male, age 76, right hemisphere
83.1
Ventral tegmental area nTPM: 150.2
1915
Female, age 42, unknown
171.2
1942
Male, age 51, unknown
161.0
2021
Male, age 53, unknown
157.7
2410
Female, age 72, unknown
139.0
2223
Female, age 72, unknown
138.0
2218
Male, age 76, both hemispheres
134.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
169.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 169.6
Samples: 139
Max nTPM: 531.3
Min nTPM: 46.0
Std nTPM: 77.5
Median nTPM: 150.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
531.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
447.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
369.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
356.2
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
355.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
335.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
324.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
323.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
315.9
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
310.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
296.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
293.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
286.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
284.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
284.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
267.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
256.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
253.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
235.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
232.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
231.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
224.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
222.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
221.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
220.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
220.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
218.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
212.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
212.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
212.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
212.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
211.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
209.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
208.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
208.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
208.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
207.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
205.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
198.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
192.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
190.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
190.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
189.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
189.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
189.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
188.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
187.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
183.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
182.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
177.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
174.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
174.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
173.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
171.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
170.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
170.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
169.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
168.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
166.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
166.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
165.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
161.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
160.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
158.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
158.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
156.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
155.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
155.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
150.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
150.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
150.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
147.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
146.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
146.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
145.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
144.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
143.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
142.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
141.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
140.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
139.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
137.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
135.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
134.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
133.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
130.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
130.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
130.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
130.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
129.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
127.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
127.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
126.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
126.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
125.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
123.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
123.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
122.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
121.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
120.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
120.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
119.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
117.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
115.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
115.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
114.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
113.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
113.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
110.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
110.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
108.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
107.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
106.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
105.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
103.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
103.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
102.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
102.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
101.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
100.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
100.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
99.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
94.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
93.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
92.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
92.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
91.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
90.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
90.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
87.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
84.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
82.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
79.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
77.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
76.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
76.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
71.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
67.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
46.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
256.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 256.8
Samples: 4
Max nTPM: 258.4
Min nTPM: 254.7
Sample A
Male
254.7
Sample B
Male
258.4
Sample C
Female
257.9
Sample D
Female
256.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.