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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
126.0
nTPM
HPA Brain:
118.1
nTPM
GTEx:
126.0
nTPM
FANTOM5:
225.6
Scaled Tags Per Million
Pig:
138.5
nTPM
Mouse:
200.3
nTPM
Allen mouse:
20.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA018156
Antibody HPA048998
Antibody CAB000457
Glial cells
Medium
Not detected
Not detected
Neuronal cells
Medium
High
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
118.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 113.3
1855
Male, age 76, left hemisphere
147.9
1898
Male, age 80, left hemisphere
129.1
2621
Female, age 67, right hemisphere
117.1
2529
Female, age 94, left hemisphere
100.7
2148
Female, age 91, left hemisphere
96.8
1911
Female, age 85, right hemisphere
88.1
Dentate gyrus nTPM: 113.6
2010
Male, age 76, both hemispheres
146.9
2530
Female, age 94, left hemisphere
124.1
1927
Female, age 91, both hemispheres
114.6
2528
Male, age 74, both hemispheres
102.7
2246
Female, age 85, both hemispheres
100.4
2531
Female, age 67, both hemispheres
93.1
Entorhinal gyrus nTPM: 107.8
2117
Female, age 91, right hemisphere
127.2
1787
Male, age 76, left hemisphere
127.0
2613
Female, age 94, left hemisphere
118.9
2764
Male, age 80, right hemisphere
102.6
1938
Female, age 85, left hemisphere
97.4
2686
Male, age 75, right hemisphere
73.6
Hippocampus, CA1 nTPM: 115.5
2045
Male, age 76, both hemispheres
147.1
2749
Male, age 80, left hemisphere
128.6
2082
Female, age 91, right hemisphere
108.5
1873
Female, age 85, both hemispheres
107.0
2527
Male, age 74, both hemispheres
86.4
Hippocampus, CA2 nTPM: 118.1
1892
Male, age 76, both hemispheres
154.0
1940
Female, age 85, left hemisphere
133.1
1963
Male, age 80, left hemisphere
114.6
2113
Female, age 91, right hemisphere
112.4
2437
Female, age 94, left hemisphere
102.7
2249
Male, age 74, both hemispheres
92.0
Hippocampus, CA3 nTPM: 109.5
1867
Male, age 76, both hemispheres
161.1
2137
Male, age 80, left hemisphere
106.7
2620
Female, age 94, left hemisphere
106.3
2436
Male, age 74, both hemispheres
98.1
1891
Female, age 85, both hemispheres
92.6
2861
Female, age 67, both hemispheres
92.1
Parahippocampal cortex nTPM: 101.0
2250
Female, age 67, right hemisphere
131.9
2018
Male, age 76, both hemispheres
131.1
1850
Male, age 80, both hemispheres
102.0
1990
Female, age 91, right hemisphere
101.7
2532
Female, age 72, left hemisphere
100.9
2245
Female, age 91, both hemispheres
96.4
1933
Female, age 85, both hemispheres
94.9
2693
Female, age 94, both hemispheres
93.3
2692
Male, age 74, both hemispheres
82.5
2622
Female, age 67, right hemisphere
75.8
Perirhinal gyrus nTPM: 113.5
1847
Female, age 91, left hemisphere
122.5
1794
Male, age 80, right hemisphere
116.1
1841
Female, age 85, right hemisphere
112.9
2848
Male, age 76, right hemisphere
109.9
2521
Female, age 94, right hemisphere
106.1
Subiculum nTPM: 110.1
2042
Male, age 76, both hemispheres
138.0
2729
Female, age 91, right hemisphere
127.2
1901
Male, age 80, both hemispheres
103.5
1977
Female, age 85, both hemispheres
100.7
2438
Female, age 94, left hemisphere
95.9
2619
Male, age 74, both hemispheres
95.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
126.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 126.0
Samples: 197
Max nTPM: 358.6
Min nTPM: 40.0
Std nTPM: 52.1
Median nTPM: 112.6
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
358.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
338.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
325.0
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
279.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
273.4
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
266.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
266.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
262.2
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
254.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
239.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
213.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
212.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
208.9
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
205.8
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
200.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
199.2
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
195.7
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
188.1
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
187.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
186.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
186.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
185.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
185.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
184.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
176.3
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
175.3
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
171.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
168.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
167.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
167.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
164.3
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
163.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
163.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
160.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
159.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
157.9
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
157.6
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
156.9
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
156.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
156.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
154.7
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
154.6
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
154.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
152.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
152.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
152.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
152.0
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
150.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
149.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
149.3
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
148.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
148.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
147.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
146.8
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
145.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
145.1
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
144.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
144.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
143.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
143.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
142.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
141.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
141.4
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
140.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
139.6
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
139.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
138.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
134.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
134.0
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
131.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
131.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
130.3
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
129.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
129.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
127.8
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
127.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
123.2
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
123.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
122.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
122.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
122.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
121.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
120.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
118.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
118.3
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
118.1
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
117.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
117.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
117.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
117.1
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
117.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
116.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
116.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
115.7
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
115.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
114.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
114.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
113.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
112.6
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
112.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
111.7
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
110.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
110.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
110.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
110.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
109.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
109.2
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
108.9
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
108.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
108.5
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
108.1
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
106.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
106.4
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
106.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
106.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
105.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
105.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
105.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
104.6
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
104.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
103.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
102.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
102.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
102.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
102.4
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
101.8
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
101.8
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
101.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
100.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
99.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
99.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
99.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
98.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
98.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
98.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
98.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
98.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
98.1
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
96.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
96.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
96.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
95.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
93.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
93.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
93.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
92.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
92.0
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
91.8
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
90.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
90.9
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
89.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
89.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
88.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
88.2
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
87.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
87.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
87.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
86.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
85.5
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
85.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
85.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
83.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
83.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
83.2
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
81.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
81.0
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
80.4
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
79.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
78.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
78.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
78.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
78.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
77.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
77.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
76.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
76.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
75.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
75.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
74.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
73.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
72.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
72.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
71.5
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
69.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
69.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
66.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
66.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
66.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
66.0
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
65.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
63.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
63.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
62.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
62.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
57.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
56.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
40.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
200.3
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 199.7
Samples: 4
Max nTPM: 204.1
Min nTPM: 195.2
Sample A
Male
202.3
Sample B
Male
204.1
Sample C
Female
197.2
Sample D
Female
195.2
Hippocampal formation nTPM: 200.3
Samples: 4
Max nTPM: 209.1
Min nTPM: 194.8
Sample A
Male
200.5
Sample B
Male
194.8
Sample C
Female
209.1
Sample D
Female
196.9
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.