MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.5 nTPM
HPA Brain:25.0 nTPM
GTEx:4.5 nTPM
FANTOM5:12.1 Scaled Tags Per Million
Pig:9.1 nTPM
Mouse:12.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 25.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.6
2586 Male, age 75, left hemisphere 25.8
2019 Male, age 18, unknown 24.3
2828 Female, age 72, unknown 24.2
2411 Female, age 72, unknown 23.2
1827 Male, age 72, unknown 21.7
1833 Male, age 53, unknown 21.0
1830 Male, age 51, unknown 20.1
1870 Female, age 42, unknown 20.1
2666 Male, age 74, left hemisphere 18.4
2219 Male, age 76, both hemispheres 17.7
Dorsal raphe nucleus
nTPM: 21.4
2298 Female, age 72, unknown 23.4
2016 Female, age 72, unknown 23.0
1828 Male, age 53, unknown 20.6
2047 Male, age 72, unknown 20.3
2750 Male, age 76, both hemispheres 19.9
Inferior colliculus
nTPM: 23.1
1848 Female, age 42, unknown 24.5
1890 Male, age 53, unknown 23.5
2097 Female, age 72, unknown 23.3
2849 Male, age 72, unknown 21.0
Median raphe nucleus
nTPM: 18.8
2220 Male, age 76, midline 18.8
Periaquaductal grey, anterior
nTPM: 21.5
1947 Male, age 18, unknown 22.7
2502 Female, age 75, unknown 22.3
1795 Male, age 51, unknown 19.5
Periaquaductal grey, dorsal
nTPM: 21.5
1840 Male, age 53, unknown 25.7
1831 Male, age 72, unknown 22.3
2464 Female, age 72, unknown 20.4
2850 Male, age 76, both hemispheres 17.7
Periaquaductal grey, lateral
nTPM: 19.2
2140 Male, age 76, both hemispheres 19.5
2272 Male, age 74, both hemispheres 19.2
2053 Male, age 18, unknown 18.9
Pretectal area
nTPM: 21.2
1817 Female, age 42, unknown 23.5
1816 Male, age 51, unknown 23.4
2007 Male, age 72, unknown 23.1
2224 Female, age 72, unknown 21.3
1815 Male, age 53, unknown 21.1
2407 Male, age 75, both hemispheres 20.9
1944 Female, age 72, unknown 20.6
2273 Male, age 74, both hemispheres 20.6
2316 Male, age 76, right hemisphere 19.9
2825 Male, age 18, unknown 19.5
2667 Female, age 75, unknown 19.1
Red nucleus
nTPM: 21.8
1821 Female, age 72, unknown 24.8
2503 Female, age 72, unknown 24.7
1865 Male, age 51, unknown 22.3
2725 Female, age 75, unknown 21.9
1954 Female, age 42, unknown 21.8
2227 Male, age 72, unknown 21.7
2785 Male, age 18, unknown 21.2
1904 Male, age 53, unknown 21.0
2588 Male, age 74, left hemisphere 20.8
2769 Male, age 72, unknown 20.7
2823 Male, age 76, right hemisphere 20.4
2584 Male, age 75, left hemisphere 20.0
Substantia nigra
nTPM: 25.0
2583 Male, age 75, right hemisphere 28.4
2241 Male, age 72, unknown 26.7
1851 Male, age 51, unknown 26.1
1916 Female, age 42, unknown 25.9
2590 Female, age 75, unknown 25.7
2409 Female, age 72, unknown 24.7
1889 Female, age 72, unknown 24.6
2699 Male, age 18, unknown 23.4
1941 Male, age 53, unknown 23.2
2665 Male, age 74, both hemispheres 20.9
Superior colliculus
nTPM: 21.7
2664 Male, age 75, both hemispheres 23.1
2087 Female, age 72, unknown 22.3
2668 Female, age 75, unknown 22.0
2587 Male, age 74, left hemisphere 21.7
2261 Male, age 18, unknown 21.6
1796 Male, age 53, unknown 21.4
1913 Female, age 42, unknown 21.3
1839 Male, age 51, unknown 21.1
1995 Male, age 72, unknown 21.1
1895 Male, age 76, right hemisphere 20.7
Ventral tegmental area
nTPM: 21.7
2410 Female, age 72, unknown 23.9
1915 Female, age 42, unknown 22.7
1942 Male, age 51, unknown 22.0
2218 Male, age 76, both hemispheres 21.4
2021 Male, age 53, unknown 21.2
2223 Female, age 72, unknown 19.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 4.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.5
Samples: 139

Max nTPM: 8.6
Min nTPM: 1.8
Std nTPM: 1.2
Median nTPM: 4.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 8.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 8.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 8.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 7.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 7.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 6.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 6.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 6.6
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 6.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 6.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 6.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.1
FF:10158-103A5 76 years, female 12.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.7
Samples: 4

Max nTPM: 9.5
Min nTPM: 7.9
Sample A Female 8.4
Sample B Female 9.5
Sample C Male 8.9
Sample D Male 7.9
Midbrain
nTPM: 9.0
Samples: 4

Max nTPM: 9.8
Min nTPM: 7.8
Sample A Female 7.8
Sample B Female 9.4
Sample C Male 9.8
Sample D Male 8.8
Periaqueductal gray
nTPM: 8.9
Samples: 3

Max nTPM: 9.5
Min nTPM: 8.6
Sample B Female 8.7
Sample C Male 8.6
Sample D Male 9.5
Superior colliculi
nTPM: 9.1
Samples: 4

Max nTPM: 10.5
Min nTPM: 6.8
Sample A Female 6.8
Sample B Female 10.5
Sample C Male 10.3
Sample D Male 8.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.0
Samples: 4

Max nTPM: 12.8
Min nTPM: 11.4
Sample A Male 12.1
Sample B Male 12.8
Sample C Female 11.7
Sample D Female 11.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68633146 Antisense, RP_050125_02_E01, Mouse strain C57BL/6J (56 days, male) 0.3

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