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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SFXN1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
71.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
67.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
64.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
63.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
62.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
62.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
58.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
57.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
55.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
54.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
53.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
53.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
51.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
50.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
50.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
50.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
50.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
49.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
49.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
46.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
45.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
44.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
43.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
43.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
42.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
42.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
42.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
41.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
41.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
40.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
40.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
40.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
39.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
39.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
39.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
39.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
38.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
38.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
38.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
38.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
37.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
37.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
37.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
36.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
36.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
36.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
35.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
35.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
35.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
35.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
35.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
34.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
34.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
33.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
33.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
33.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
33.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
33.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
32.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
32.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
31.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
31.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
31.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
31.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
31.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
31.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
30.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
30.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
30.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
30.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
30.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
29.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
29.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
28.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
28.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
27.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
27.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
27.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
27.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
27.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
27.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
26.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
26.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
25.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
25.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
25.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
24.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
24.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
24.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
23.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
23.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
23.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
22.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
22.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
21.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
18.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
14.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SFXN1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.7
Number of samples
231
Samples
Sample
Description
TPM
DO45197
0 years, male, NA, stage:2, alive, 1170 days
71.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
71.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
70.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
66.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
64.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
63.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
61.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
58.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
57.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
57.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
56.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
52.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
51.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
51.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
50.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
46.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
46.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
45.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
45.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
44.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
43.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
42.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
42.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
42.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
41.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
40.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
40.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
40.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
40.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
39.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
39.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
39.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
38.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
36.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
35.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
35.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
34.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
34.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
34.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
33.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
33.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
33.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
33.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
32.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
32.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
32.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
32.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
32.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
31.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
31.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
31.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
31.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
31.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
30.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
30.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
29.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
29.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
29.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
29.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
28.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
28.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
28.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
28.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
27.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
27.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
26.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
25.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
25.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
24.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
24.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
24.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
23.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
23.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
21.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.3
1027
Tumor
1.2
465
Tumor
1.0
981
Tumor
0.9
423
Tumor
0.8
332
Normal
0.7
436
Normal
0.7
636
Normal
0.7
1046
Normal
0.7
571
Tumor
0.7
867
Tumor
0.7
396
Normal
0.6
342
Normal
0.6
452
Normal
0.6
298
Normal
0.6
314
Normal
0.6
232
Normal
0.6
426
Normal
0.6
446
Normal
0.6
128
Normal
0.6
615
Tumor
0.6
466
Normal
0.6
915
Tumor
0.6
924
Normal
0.6
388
Normal
0.5
222
Normal
0.5
353
Tumor
0.5
818
Normal
0.5
1045
Tumor
0.5
172
Normal
0.5
686
Normal
0.5
132
Normal
0.5
922
Normal
0.5
964
Normal
0.5
526
Normal
0.5
392
Normal
0.5
824
Normal
0.5
618
Normal
0.5
411
Tumor
0.5
862
Normal
0.5
568
Normal
0.5
432
Normal
0.5
861
Tumor
0.5
462
Normal
0.5
616
Normal
0.5
786
Normal
0.5
518
Normal
0.5
196
Normal
0.5
744
Normal
0.5
227
Tumor
0.5
723
Tumor
0.5
186
Normal
0.5
328
Normal
0.5
868
Normal
0.5
344
Normal
0.5
414
Normal
0.5
358
Normal
0.5
218
Normal
0.5
698
Normal
0.5
428
Normal
0.5
148
Normal
0.5
926
Normal
0.5
468
Normal
0.5
695
Tumor
0.5
278
Normal
0.4
554
Normal
0.4
114
Normal
0.4
361
Tumor
0.4
162
Normal
0.4
866
Normal
0.4
376
Normal
0.4
464
Normal
0.4
394
Normal
0.4
746
Normal
0.4
258
Normal
0.4
1026
Normal
0.4
642
Normal
0.4
564
Normal
0.4
1022
Normal
0.4
882
Normal
0.4
742
Normal
0.4
1032
Normal
0.4
354
Normal
0.4
648
Normal
0.4
214
Normal
0.4
357
Tumor
0.4
944
Normal
0.4
978
Normal
0.4
864
Normal
0.4
635
Tumor
0.4
488
Normal
0.4
368
Normal
0.4
534
Normal
0.4
968
Normal
0.4
918
Normal
0.4
714
Normal
0.4
984
Normal
0.4
982
Normal
0.4
756
Normal
0.4
664
Normal
0.4
546
Normal
0.4
137
Tumor
0.4
738
Normal
0.4
393
Tumor
0.4
1028
Normal
0.4
925
Tumor
0.4
111
Normal
0.4
448
Normal
0.4
356
Normal
0.4
816
Normal
0.4
954
Normal
0.4
884
Normal
0.3
1016
Normal
0.3
352
Normal
0.3
113
Tumor
0.3
628
Normal
0.3
312
Normal
0.3
145
Tumor
0.3
424
Normal
0.3
435
Tumor
0.3
666
Normal
0.3
434
Normal
0.3
138
Normal
0.3
362
Normal
0.3
557
Tumor
0.3
728
Normal
0.3
662
Normal
0.3
528
Normal
0.3
1044
Normal
0.3
722
Normal
0.3
923
Tumor
0.3
482
Normal
0.3
878
Normal
0.3
696
Normal
0.3
558
Normal
0.3
1041
Tumor
0.3
952
Normal
0.3
142
Normal
0.3
741
Tumor
0.3
124
Normal
0.3
572
Normal
0.3
958
Normal
0.3
1014
Normal
0.3
456
Normal
0.3
938
Normal
0.3
912
Normal
0.3
976
Normal
0.3
416
Normal
0.3
286
Normal
0.3
136
Normal
0.3
472
Normal
0.3
914
Normal
0.3
524
Normal
0.3
451
Tumor
0.3
665
Tumor
0.3
484
Normal
0.2
574
Normal
0.2
858
Normal
0.2
422
Normal
0.2
716
Normal
0.2
778
Normal
0.2
262
Normal
0.2
412
Normal
0.2
366
Normal
0.2
1042
Normal
0.2
672
Normal
0.2
916
Normal
0.2
874
Normal
0.2
257
Tumor
0.2
268
Normal
0.2
384
Normal
0.2
146
Normal
0.2
755
Tumor
0.2
185
Tumor
0.2
431
Tumor
0.2
386
Normal
0.2
272
Normal
0.2
873
Tumor
0.2
863
Tumor
0.2
538
Normal
0.2
513
Tumor
0.2
494
Normal
0.2
514
Normal
0.2
228
Normal
0.2
427
Tumor
0.2
474
Normal
0.2
715
Tumor
0.2
911
Tumor
0.2
212
Normal
0.2
188
Normal
0.2
953
Tumor
0.1
852
Normal
0.1
364
Normal
0.1
956
Normal
0.1
365
Tumor
0.1
785
Tumor
0.1
966
Normal
0.1
127
Tumor
0.1
284
Normal
0.1
161
Tumor
0.1
487
Tumor
0.1
126
Normal
0.1
191
Tumor
0.1
261
Tumor
0.1
1043
Tumor
0.1
444
Normal
0.0
481
Tumor
0.0
515
Tumor
0.0
341
Tumor
0.0
498
Normal
0.0
745
Tumor
0.0
491
Tumor
0.0
217
Tumor
0.0
231
Tumor
0.0
387
Tumor
0.0
955
Tumor
0.0
187
Tumor
0.0
478
Normal
0.0
492
Normal
0.0
536
Normal
0.0
195
Tumor
0.0
224
Normal
-0.1
516
Normal
-0.1
383
Tumor
-0.1
192
Normal
-0.1
857
Tumor
-0.1
123
Tumor
-0.1
461
Tumor
-0.1
523
Tumor
-0.1
433
Tumor
-0.1
171
Tumor
-0.1
851
Tumor
-0.1
327
Tumor
-0.1
445
Tumor
-0.1
517
Tumor
-0.1
135
Tumor
-0.1
777
Tumor
-0.2
112
Tumor
-0.2
713
Tumor
-0.2
443
Tumor
-0.2
1013
Tumor
-0.2
641
Tumor
-0.2
823
Tumor
-0.2
553
Tumor
-0.2
617
Tumor
-0.2
883
Tumor
-0.2
563
Tumor
-0.2
473
Tumor
-0.2
537
Tumor
-0.2
685
Tumor
-0.2
483
Tumor
-0.2
141
Tumor
-0.2
363
Tumor
-0.2
313
Tumor
-0.3
727
Tumor
-0.3
415
Tumor
-0.3
1025
Tumor
-0.3
277
Tumor
-0.3
963
Tumor
-0.3
937
Tumor
-0.3
267
Tumor
-0.3
477
Tumor
-0.3
527
Tumor
-0.3
297
Tumor
-0.3
213
Tumor
-0.4
721
Tumor
-0.4
967
Tumor
-0.4
223
Tumor
-0.4
814
Normal
-0.4
355
Tumor
-0.4
391
Tumor
-0.5
1015
Tumor
-0.5
957
Tumor
-0.5
421
Tumor
-0.5
447
Tumor
-0.5
921
Tumor
-0.5
351
Tumor
-0.5
813
Tumor
-0.5
285
Tumor
-0.5
525
Tumor
-0.5
977
Tumor
-0.5
331
Tumor
-0.5
865
Tumor
-0.5
1031
Tumor
-0.5
221
Tumor
-0.6
1021
Tumor
-0.6
467
Tumor
-0.6
471
Tumor
-0.6
395
Tumor
-0.6
147
Tumor
-0.6
697
Tumor
-0.6
567
Tumor
-0.6
271
Tumor
-0.6
913
Tumor
-0.6
943
Tumor
-0.6
881
Tumor
-0.7
743
Tumor
-0.7
413
Tumor
-0.7
375
Tumor
-0.7
983
Tumor
-0.7
647
Tumor
-0.7
497
Tumor
-0.7
877
Tumor
-0.7
493
Tumor
-0.7
211
Tumor
-0.7
671
Tumor
-0.7
455
Tumor
-0.8
663
Tumor
-0.8
533
Tumor
-0.8
535
Tumor
-0.8
573
Tumor
-0.8
737
Tumor
-0.8
463
Tumor
-0.8
917
Tumor
-0.8
367
Tumor
-0.8
975
Tumor
-0.8
425
Tumor
-0.9
125
Tumor
-0.9
724
Normal
-0.9
951
Tumor
-0.9
131
Tumor
-1.0
385
Tumor
-1.0
343
Tumor
-1.0
311
Tumor
-1.0
965
Tumor
-1.0
817
Tumor
-1.1
815
Tumor
-1.1
545
Tumor
-1.1
661
Tumor
-1.1
283
Tumor
-1.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
