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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
85.5
nTPM
HPA Brain:
193.6
nTPM
GTEx:
85.5
nTPM
FANTOM5:
286.4
Scaled Tags Per Million
Pig:
169.0
nTPM
Mouse:
330.9
nTPM
Allen mouse:
22.4
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
193.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 145.4
1898
Male, age 80, left hemisphere
191.6
2621
Female, age 67, right hemisphere
178.4
2148
Female, age 91, left hemisphere
154.8
1911
Female, age 85, right hemisphere
129.5
1855
Male, age 76, left hemisphere
116.5
2529
Female, age 94, left hemisphere
101.1
Dentate gyrus nTPM: 169.9
1927
Female, age 91, both hemispheres
244.4
2531
Female, age 67, both hemispheres
205.1
2528
Male, age 74, both hemispheres
156.8
2530
Female, age 94, left hemisphere
150.1
2246
Female, age 85, both hemispheres
142.4
2010
Male, age 76, both hemispheres
120.3
Entorhinal gyrus nTPM: 163.0
2613
Female, age 94, left hemisphere
286.6
1938
Female, age 85, left hemisphere
175.3
2764
Male, age 80, right hemisphere
164.1
1787
Male, age 76, left hemisphere
143.7
2686
Male, age 75, right hemisphere
131.3
2117
Female, age 91, right hemisphere
76.7
Hippocampus, CA1 nTPM: 191.7
2749
Male, age 80, left hemisphere
313.7
2527
Male, age 74, both hemispheres
212.4
1873
Female, age 85, both hemispheres
169.2
2082
Female, age 91, right hemisphere
132.6
2045
Male, age 76, both hemispheres
130.7
Hippocampus, CA2 nTPM: 144.3
1963
Male, age 80, left hemisphere
186.7
2249
Male, age 74, both hemispheres
150.2
2113
Female, age 91, right hemisphere
143.7
1892
Male, age 76, both hemispheres
140.6
2437
Female, age 94, left hemisphere
138.1
1940
Female, age 85, left hemisphere
106.4
Hippocampus, CA3 nTPM: 187.1
2137
Male, age 80, left hemisphere
287.0
2620
Female, age 94, left hemisphere
243.5
2861
Female, age 67, both hemispheres
193.6
2436
Male, age 74, both hemispheres
172.7
1867
Male, age 76, both hemispheres
118.1
1891
Female, age 85, both hemispheres
107.9
Parahippocampal cortex nTPM: 146.4
2245
Female, age 91, both hemispheres
227.3
1990
Female, age 91, right hemisphere
172.3
1850
Male, age 80, both hemispheres
160.4
2693
Female, age 94, both hemispheres
153.8
1933
Female, age 85, both hemispheres
149.8
2250
Female, age 67, right hemisphere
146.5
2622
Female, age 67, right hemisphere
125.7
2692
Male, age 74, both hemispheres
122.9
2532
Female, age 72, left hemisphere
104.9
2018
Male, age 76, both hemispheres
101.1
Perirhinal gyrus nTPM: 193.6
1847
Female, age 91, left hemisphere
310.8
1794
Male, age 80, right hemisphere
178.8
2521
Female, age 94, right hemisphere
167.1
1841
Female, age 85, right hemisphere
161.6
2848
Male, age 76, right hemisphere
149.7
Subiculum nTPM: 122.0
1977
Female, age 85, both hemispheres
148.5
1901
Male, age 80, both hemispheres
148.3
2619
Male, age 74, both hemispheres
121.3
2438
Female, age 94, left hemisphere
117.6
2729
Female, age 91, right hemisphere
109.5
2042
Male, age 76, both hemispheres
86.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
85.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 85.5
Samples: 197
Max nTPM: 261.0
Min nTPM: 1.0
Std nTPM: 55.1
Median nTPM: 82.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
261.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
232.7
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
222.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
212.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
209.3
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
206.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
194.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
193.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
191.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
188.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
182.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
182.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
176.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
175.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
170.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
165.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
159.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
159.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
157.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
155.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
150.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
150.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
150.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
147.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
146.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
146.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
144.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
143.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
142.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
142.3
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
139.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
138.9
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
138.5
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
135.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
135.0
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
134.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
134.7
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
134.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
134.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
133.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
130.2
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
128.8
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
128.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
127.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
126.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
126.7
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
126.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
125.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
124.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
124.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
122.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
121.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
120.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
120.4
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
120.1
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
119.9
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
119.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
118.2
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
118.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
117.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
116.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
115.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
114.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
113.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
112.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
112.3
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
112.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
110.7
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
109.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
109.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
107.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
107.7
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
107.5
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
104.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
104.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
102.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
102.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
102.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
101.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
99.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
95.4
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
95.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
94.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
94.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
94.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
93.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
93.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
92.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
91.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
90.6
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
89.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
88.6
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
86.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
85.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
85.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
84.6
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
83.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
83.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
82.4
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
82.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
80.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
78.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
78.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
77.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
75.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
74.0
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
73.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
73.0
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
72.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
71.3
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
70.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
70.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
70.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
69.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
68.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
68.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
68.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
67.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
67.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
65.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
65.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
65.0
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
62.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
59.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
59.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
59.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
57.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
55.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
55.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
55.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
53.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
51.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
51.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
51.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
51.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
50.7
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
50.5
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
50.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
49.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
48.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
46.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
46.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
45.0
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
44.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
44.0
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
42.2
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
41.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
39.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
37.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
36.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
36.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
34.9
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
34.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
33.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
32.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
31.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
30.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
30.5
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
30.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
29.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
29.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
27.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
27.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
26.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
26.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
24.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
23.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
22.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
20.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
19.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
17.6
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
16.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
15.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
15.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
15.8
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
14.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
14.6
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
14.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
13.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
12.8
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
12.4
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
12.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
10.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
8.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
8.3
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
7.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
6.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
6.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
6.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
4.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
4.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
4.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
4.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
3.9
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
3.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
1.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
1.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
330.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 250.0
Samples: 4
Max nTPM: 274.9
Min nTPM: 227.6
Sample A
Male
227.6
Sample B
Male
228.3
Sample C
Female
274.9
Sample D
Female
269.3
Hippocampal formation nTPM: 330.9
Samples: 4
Max nTPM: 342.2
Min nTPM: 308.3
Sample A
Male
337.7
Sample B
Male
342.2
Sample C
Female
335.3
Sample D
Female
308.3
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.