MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.2 nTPM
HPA Brain:26.8 nTPM
GTEx:9.2 nTPM
FANTOM5:7.1 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 26.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.6
2219 Male, age 76, both hemispheres 28.6
2666 Male, age 74, left hemisphere 27.3
2586 Male, age 75, left hemisphere 26.0
1830 Male, age 51, unknown 25.0
1833 Male, age 53, unknown 23.8
2411 Female, age 72, unknown 23.4
2019 Male, age 18, unknown 21.8
1827 Male, age 72, unknown 20.4
2828 Female, age 72, unknown 20.4
1870 Female, age 42, unknown 19.4
Dorsal raphe nucleus
nTPM: 20.9
2047 Male, age 72, unknown 24.5
2750 Male, age 76, both hemispheres 21.9
2016 Female, age 72, unknown 21.4
1828 Male, age 53, unknown 20.7
2298 Female, age 72, unknown 16.1
Inferior colliculus
nTPM: 20.8
2849 Male, age 72, unknown 24.8
1890 Male, age 53, unknown 23.0
1848 Female, age 42, unknown 18.7
2097 Female, age 72, unknown 16.8
Median raphe nucleus
nTPM: 26.8
2220 Male, age 76, midline 26.8
Periaquaductal grey, anterior
nTPM: 20.1
1947 Male, age 18, unknown 21.2
1795 Male, age 51, unknown 20.4
2502 Female, age 75, unknown 18.7
Periaquaductal grey, dorsal
nTPM: 23.3
2850 Male, age 76, both hemispheres 26.3
1831 Male, age 72, unknown 24.1
2464 Female, age 72, unknown 22.0
1840 Male, age 53, unknown 21.0
Periaquaductal grey, lateral
nTPM: 22.9
2053 Male, age 18, unknown 24.3
2140 Male, age 76, both hemispheres 23.6
2272 Male, age 74, both hemispheres 20.8
Pretectal area
nTPM: 20.2
2407 Male, age 75, both hemispheres 26.4
2825 Male, age 18, unknown 22.2
2273 Male, age 74, both hemispheres 21.5
1815 Male, age 53, unknown 20.7
2667 Female, age 75, unknown 20.7
2316 Male, age 76, right hemisphere 20.0
1944 Female, age 72, unknown 19.8
2224 Female, age 72, unknown 19.6
1816 Male, age 51, unknown 18.1
1817 Female, age 42, unknown 17.2
2007 Male, age 72, unknown 16.4
Red nucleus
nTPM: 21.8
2588 Male, age 74, left hemisphere 30.1
2584 Male, age 75, left hemisphere 26.9
1865 Male, age 51, unknown 24.8
2503 Female, age 72, unknown 22.7
2725 Female, age 75, unknown 21.4
2823 Male, age 76, right hemisphere 21.4
2769 Male, age 72, unknown 19.9
1904 Male, age 53, unknown 19.3
2227 Male, age 72, unknown 19.3
1954 Female, age 42, unknown 19.1
2785 Male, age 18, unknown 19.0
1821 Female, age 72, unknown 17.8
Substantia nigra
nTPM: 23.7
2409 Female, age 72, unknown 27.1
2699 Male, age 18, unknown 26.1
2583 Male, age 75, right hemisphere 25.4
2241 Male, age 72, unknown 24.4
1941 Male, age 53, unknown 24.0
2665 Male, age 74, both hemispheres 23.4
1851 Male, age 51, unknown 23.2
2590 Female, age 75, unknown 22.3
1889 Female, age 72, unknown 20.7
1916 Female, age 42, unknown 20.7
Superior colliculus
nTPM: 22.5
1913 Female, age 42, unknown 26.0
1995 Male, age 72, unknown 25.1
2668 Female, age 75, unknown 24.8
2087 Female, age 72, unknown 23.0
1796 Male, age 53, unknown 22.3
2664 Male, age 75, both hemispheres 21.9
2587 Male, age 74, left hemisphere 21.3
1839 Male, age 51, unknown 20.1
1895 Male, age 76, right hemisphere 20.1
2261 Male, age 18, unknown 19.9
Ventral tegmental area
nTPM: 25.0
2223 Female, age 72, unknown 26.7
2021 Male, age 53, unknown 26.1
2218 Male, age 76, both hemispheres 25.4
1942 Male, age 51, unknown 25.1
2410 Female, age 72, unknown 23.6
1915 Female, age 42, unknown 23.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.2
Samples: 139

Max nTPM: 23.7
Min nTPM: 4.5
Std nTPM: 3.3
Median nTPM: 8.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 23.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 21.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 20.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 16.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 16.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 16.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 15.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 14.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 14.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 14.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 14.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 7.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.1
FF:10158-103A5 76 years, female 7.1

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