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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
9.6
nTPM
HPA Brain:
27.5
nTPM
GTEx:
9.6
nTPM
FANTOM5:
6.5
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA047105
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
27.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 25.7
1855
Male, age 76, left hemisphere
29.8
2529
Female, age 94, left hemisphere
28.1
1911
Female, age 85, right hemisphere
26.8
2148
Female, age 91, left hemisphere
26.8
2621
Female, age 67, right hemisphere
23.2
1898
Male, age 80, left hemisphere
19.7
Dentate gyrus nTPM: 27.4
2010
Male, age 76, both hemispheres
31.2
2246
Female, age 85, both hemispheres
29.8
2531
Female, age 67, both hemispheres
29.5
2530
Female, age 94, left hemisphere
27.2
2528
Male, age 74, both hemispheres
23.8
1927
Female, age 91, both hemispheres
22.6
Entorhinal gyrus nTPM: 24.2
2613
Female, age 94, left hemisphere
25.7
2764
Male, age 80, right hemisphere
25.6
1938
Female, age 85, left hemisphere
25.2
2686
Male, age 75, right hemisphere
24.2
1787
Male, age 76, left hemisphere
23.6
2117
Female, age 91, right hemisphere
21.0
Hippocampus, CA1 nTPM: 26.4
2045
Male, age 76, both hemispheres
34.4
1873
Female, age 85, both hemispheres
29.1
2082
Female, age 91, right hemisphere
23.9
2749
Male, age 80, left hemisphere
22.6
2527
Male, age 74, both hemispheres
21.9
Hippocampus, CA2 nTPM: 24.0
2113
Female, age 91, right hemisphere
27.5
1892
Male, age 76, both hemispheres
26.4
1940
Female, age 85, left hemisphere
25.5
2437
Female, age 94, left hemisphere
24.6
2249
Male, age 74, both hemispheres
21.0
1963
Male, age 80, left hemisphere
19.3
Hippocampus, CA3 nTPM: 27.5
2620
Female, age 94, left hemisphere
34.2
1891
Female, age 85, both hemispheres
28.9
2861
Female, age 67, both hemispheres
27.4
2137
Male, age 80, left hemisphere
27.2
1867
Male, age 76, both hemispheres
24.3
2436
Male, age 74, both hemispheres
22.8
Parahippocampal cortex nTPM: 25.4
2532
Female, age 72, left hemisphere
29.4
1850
Male, age 80, both hemispheres
28.5
2622
Female, age 67, right hemisphere
26.7
2692
Male, age 74, both hemispheres
26.1
2018
Male, age 76, both hemispheres
25.4
2245
Female, age 91, both hemispheres
25.2
2693
Female, age 94, both hemispheres
24.4
1933
Female, age 85, both hemispheres
23.4
2250
Female, age 67, right hemisphere
23.3
1990
Female, age 91, right hemisphere
21.6
Perirhinal gyrus nTPM: 23.7
2848
Male, age 76, right hemisphere
28.5
1841
Female, age 85, right hemisphere
24.0
1794
Male, age 80, right hemisphere
23.7
2521
Female, age 94, right hemisphere
22.4
1847
Female, age 91, left hemisphere
19.9
Subiculum nTPM: 27.0
2438
Female, age 94, left hemisphere
32.9
2042
Male, age 76, both hemispheres
29.6
1901
Male, age 80, both hemispheres
27.1
1977
Female, age 85, both hemispheres
25.5
2619
Male, age 74, both hemispheres
24.2
2729
Female, age 91, right hemisphere
22.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
9.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 9.6
Samples: 197
Max nTPM: 27.4
Min nTPM: 4.5
Std nTPM: 3.5
Median nTPM: 9.0
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
27.4
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
22.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
22.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
22.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
20.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
20.1
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
19.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
18.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
18.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
17.1
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
16.7
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
16.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
14.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
14.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
14.2
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
14.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
14.0
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
13.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
13.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
13.5
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
13.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
13.1
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
12.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
12.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
12.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
12.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
12.5
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
12.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
12.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
12.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
12.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
12.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
12.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
12.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
11.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
11.8
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
11.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
11.4
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
11.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
11.4
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
11.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
11.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
11.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
11.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
11.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
11.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
11.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
11.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
11.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
11.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
10.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
10.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
10.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
10.8
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
10.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
10.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
10.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
10.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
10.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
10.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
10.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
10.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
10.3
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
10.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
10.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
10.2
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
10.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
10.1
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
10.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
10.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
10.0
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
10.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
10.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
10.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
9.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
9.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
9.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
9.9
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
9.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
9.8
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
9.8
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
9.7
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
9.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
9.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
9.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
9.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
9.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
9.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
9.4
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
9.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
9.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
9.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
9.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
9.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
9.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
9.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
9.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
9.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
9.0
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
8.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
8.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
8.8
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
8.8
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
8.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
8.6
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
8.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
8.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
8.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
8.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
8.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
8.3
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
8.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
8.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
8.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
8.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
8.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
8.1
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
8.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
8.1
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
8.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
8.1
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
8.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
8.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
8.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
8.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
7.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
7.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
7.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
7.8
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
7.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
7.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
7.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
7.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
7.6
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
7.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
7.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
7.5
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
7.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
7.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
7.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
7.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
7.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
7.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
7.3
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
7.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
7.3
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
7.3
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
7.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
7.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
7.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
7.2
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
7.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
7.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
7.1
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
7.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
7.0
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
7.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
7.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
6.9
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
6.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
6.9
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
6.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
6.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
6.7
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
6.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
6.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
6.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
6.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
6.6
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
6.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
6.5
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
6.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
6.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
6.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
6.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
6.3
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
6.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
6.3
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
6.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
6.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
6.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
6.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
6.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
6.0
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
6.0
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
5.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
5.8
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
5.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
5.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
5.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
5.4
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
5.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
5.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
5.2
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
5.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
4.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
4.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.