We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TPRA1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
45.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
45.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
42.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
42.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
41.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
39.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
37.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
37.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
36.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
36.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
36.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
36.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
35.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
35.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
34.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
33.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
33.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
33.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
33.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
33.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
32.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
32.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
32.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
32.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
32.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
32.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
31.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
31.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
31.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
31.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
30.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
30.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
29.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
29.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
29.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
28.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
28.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
28.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
27.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
27.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
27.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
27.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
26.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
26.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
26.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
25.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
25.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
25.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
24.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
24.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
23.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
23.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
23.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
23.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
22.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
21.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
21.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
20.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
20.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
20.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
19.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
19.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
18.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
17.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TPRA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.7
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
62.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
55.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
45.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
44.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
36.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
35.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
35.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
34.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
34.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
33.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
32.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
32.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
30.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
27.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
27.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
27.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
25.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
24.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
23.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
20.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
911
Tumor
2.5
616
Normal
1.2
913
Tumor
1.1
491
Tumor
0.9
785
Tumor
0.9
1041
Tumor
0.9
914
Normal
0.9
553
Tumor
0.9
663
Tumor
0.9
615
Tumor
0.9
471
Tumor
0.8
492
Normal
0.8
642
Normal
0.7
135
Tumor
0.7
211
Tumor
0.7
884
Normal
0.7
283
Tumor
0.7
713
Tumor
0.7
912
Normal
0.7
363
Tumor
0.7
493
Tumor
0.6
563
Tumor
0.6
573
Tumor
0.6
473
Tumor
0.6
777
Tumor
0.6
131
Tumor
0.6
921
Tumor
0.6
882
Normal
0.5
478
Normal
0.5
517
Tumor
0.5
755
Tumor
0.5
878
Normal
0.5
647
Tumor
0.4
227
Tumor
0.4
917
Tumor
0.4
498
Normal
0.4
715
Tumor
0.4
786
Normal
0.4
221
Tumor
0.4
1026
Normal
0.4
1022
Normal
0.4
665
Tumor
0.4
1042
Normal
0.4
814
Normal
0.4
415
Tumor
0.4
515
Tumor
0.4
461
Tumor
0.3
213
Tumor
0.3
951
Tumor
0.3
915
Tumor
0.3
756
Normal
0.3
545
Tumor
0.3
977
Tumor
0.3
483
Tumor
0.3
497
Tumor
0.3
416
Normal
0.3
513
Tumor
0.2
923
Tumor
0.2
538
Normal
0.2
1032
Normal
0.2
567
Tumor
0.2
494
Normal
0.2
224
Normal
0.2
617
Tumor
0.2
1028
Normal
0.2
364
Normal
0.2
1016
Normal
0.2
472
Normal
0.2
195
Tumor
0.2
355
Tumor
0.2
186
Normal
0.2
327
Tumor
0.2
686
Normal
0.2
223
Tumor
0.2
192
Normal
0.2
328
Normal
0.2
571
Tumor
0.2
411
Tumor
0.2
191
Tumor
0.1
217
Tumor
0.1
268
Normal
0.1
212
Normal
0.1
745
Tumor
0.1
537
Tumor
0.1
981
Tumor
0.1
716
Normal
0.1
572
Normal
0.1
356
Normal
0.1
396
Normal
0.1
982
Normal
0.1
813
Tumor
0.1
386
Normal
0.1
558
Normal
0.1
148
Normal
0.1
666
Normal
0.1
664
Normal
0.1
196
Normal
0.1
721
Tumor
0.1
142
Normal
0.1
388
Normal
0.1
916
Normal
0.1
648
Normal
0.1
525
Tumor
0.1
984
Normal
0.1
222
Normal
0.1
412
Normal
0.1
976
Normal
0.1
557
Tumor
0.0
966
Normal
0.0
925
Tumor
0.0
727
Tumor
0.0
188
Normal
0.0
284
Normal
0.0
145
Tumor
0.0
1027
Tumor
0.0
474
Normal
0.0
534
Normal
0.0
533
Tumor
0.0
696
Normal
0.0
146
Normal
0.0
488
Normal
0.0
514
Normal
0.0
523
Tumor
0.0
481
Tumor
0.0
394
Normal
0.0
922
Normal
0.0
516
Normal
0.0
722
Normal
0.0
671
Tumor
0.0
187
Tumor
0.0
695
Tumor
0.0
714
Normal
0.0
218
Normal
0.0
228
Normal
0.0
661
Tumor
0.0
528
Normal
0.0
214
Normal
-0.1
662
Normal
-0.1
462
Normal
-0.1
1014
Normal
-0.1
564
Normal
-0.1
636
Normal
-0.1
778
Normal
-0.1
958
Normal
-0.1
172
Normal
-0.1
392
Normal
-0.1
1015
Tumor
-0.1
685
Tumor
-0.1
964
Normal
-0.1
554
Normal
-0.1
546
Normal
-0.1
286
Normal
-0.1
524
Normal
-0.1
147
Tumor
-0.1
527
Tumor
-0.1
137
Tumor
-0.1
737
Tumor
-0.1
955
Tumor
-0.1
746
Normal
-0.1
978
Normal
-0.1
395
Tumor
-0.1
918
Normal
-0.1
968
Normal
-0.1
518
Normal
-0.1
482
Normal
-0.2
487
Tumor
-0.2
162
Normal
-0.2
574
Normal
-0.2
185
Tumor
-0.2
484
Normal
-0.2
568
Normal
-0.2
141
Tumor
-0.2
628
Normal
-0.2
171
Tumor
-0.2
393
Tumor
-0.2
136
Normal
-0.2
526
Normal
-0.2
926
Normal
-0.2
262
Normal
-0.2
953
Tumor
-0.2
261
Tumor
-0.2
1025
Tumor
-0.2
132
Normal
-0.2
477
Tumor
-0.2
618
Normal
-0.3
743
Tumor
-0.3
937
Tumor
-0.3
138
Normal
-0.3
391
Tumor
-0.3
1031
Tumor
-0.3
161
Tumor
-0.3
924
Normal
-0.3
1013
Tumor
-0.3
272
Normal
-0.4
1021
Tumor
-0.4
285
Tumor
-0.4
672
Normal
-0.4
728
Normal
-0.4
271
Tumor
-0.4
952
Normal
-0.4
627
Tumor
-0.4
738
Normal
-0.4
883
Tumor
-0.5
231
Tumor
-0.5
938
Normal
-0.5
741
Tumor
-0.5
963
Tumor
-0.5
258
Normal
-0.6
943
Tumor
-0.6
723
Tumor
-0.6
387
Tumor
-0.6
956
Normal
-0.6
257
Tumor
-0.7
944
Normal
-0.7
641
Tumor
-0.7
965
Tumor
-0.7
267
Tumor
-0.7
975
Tumor
-0.7
232
Normal
-0.7
954
Normal
-0.8
983
Tumor
-0.9
744
Normal
-1.0
967
Tumor
-1.1
881
Tumor
-1.1
385
Tumor
-1.2
957
Tumor
-1.2
635
Tumor
-1.2
742
Normal
-1.3
724
Normal
-2.0
877
Tumor
-2.4
351
Tumor
N/A
352
Normal
N/A
111
Normal
N/A
353
Tumor
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
114
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
125
Tumor
N/A
367
Tumor
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
857
Tumor
N/A
858
Normal
N/A
861
Tumor
N/A
862
Normal
N/A
863
Tumor
N/A
1046
Normal
N/A
864
Normal
N/A
1045
Tumor
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
451
Tumor
N/A
331
Tumor
N/A
452
Normal
N/A
332
Normal
N/A
455
Tumor
N/A
697
Tumor
N/A
456
Normal
N/A
698
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
