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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCOLCE2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
64.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
46.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
44.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
43.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
37.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
35.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
34.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
33.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
31.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
30.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
30.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
30.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
29.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
29.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
26.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
23.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
22.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
21.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
20.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCOLCE2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
117.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
99.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
59.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
47.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
47.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
46.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
45.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
44.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
41.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
41.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
40.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
40.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
35.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
35.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
34.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
34.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
33.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
28.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
28.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
27.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
24.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
1.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
1.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
343
Tumor
2.6
227
Tumor
2.5
425
Tumor
2.4
517
Tumor
2.3
743
Tumor
2.2
367
Tumor
2.1
545
Tumor
2.0
471
Tumor
1.9
131
Tumor
1.8
125
Tumor
1.8
211
Tumor
1.8
363
Tumor
1.6
491
Tumor
1.6
257
Tumor
1.5
283
Tumor
1.4
573
Tumor
1.3
815
Tumor
1.2
331
Tumor
1.1
863
Tumor
1.1
813
Tumor
1.1
983
Tumor
1.0
487
Tumor
1.0
1043
Tumor
0.9
443
Tumor
0.9
715
Tumor
0.8
745
Tumor
0.8
313
Tumor
0.8
737
Tumor
0.7
923
Tumor
0.7
1025
Tumor
0.7
537
Tumor
0.7
271
Tumor
0.7
523
Tumor
0.7
1041
Tumor
0.7
477
Tumor
0.6
285
Tumor
0.6
567
Tumor
0.6
147
Tumor
0.6
161
Tumor
0.6
375
Tumor
0.5
431
Tumor
0.5
713
Tumor
0.5
535
Tumor
0.5
1027
Tumor
0.4
112
Tumor
0.4
445
Tumor
0.4
387
Tumor
0.3
421
Tumor
0.3
957
Tumor
0.2
865
Tumor
0.2
393
Tumor
0.2
185
Tumor
0.1
685
Tumor
0.1
341
Tumor
0.1
355
Tumor
0.1
917
Tumor
0.0
963
Tumor
0.0
516
Normal
0.0
391
Tumor
0.0
697
Tumor
0.0
426
Normal
0.0
514
Normal
-0.1
862
Normal
-0.1
388
Normal
-0.1
553
Tumor
-0.1
187
Tumor
-0.1
1014
Normal
-0.1
977
Tumor
-0.1
524
Normal
-0.1
123
Tumor
-0.2
744
Normal
-0.2
126
Normal
-0.2
978
Normal
-0.2
915
Tumor
-0.2
851
Tumor
-0.2
224
Normal
-0.2
311
Tumor
-0.2
384
Normal
-0.2
137
Tumor
-0.2
534
Normal
-0.2
982
Normal
-0.2
967
Tumor
-0.2
478
Normal
-0.2
127
Tumor
-0.2
357
Tumor
-0.2
473
Tumor
-0.2
413
Tumor
-0.2
376
Normal
-0.3
742
Normal
-0.3
533
Tumor
-0.3
364
Normal
-0.3
447
Tumor
-0.3
433
Tumor
-0.3
526
Normal
-0.3
414
Normal
-0.3
396
Normal
-0.3
482
Normal
-0.3
483
Tumor
-0.3
351
Tumor
-0.3
864
Normal
-0.3
297
Tumor
-0.3
124
Normal
-0.3
366
Normal
-0.3
394
Normal
-0.3
424
Normal
-0.3
823
Tumor
-0.3
284
Normal
-0.3
494
Normal
-0.3
328
Normal
-0.3
484
Normal
-0.3
474
Normal
-0.3
383
Tumor
-0.3
867
Tumor
-0.3
722
Normal
-0.3
498
Normal
-0.3
538
Normal
-0.4
228
Normal
-0.4
1026
Normal
-0.4
428
Normal
-0.4
984
Normal
-0.4
135
Tumor
-0.4
488
Normal
-0.4
361
Tumor
-0.4
546
Normal
-0.4
368
Normal
-0.4
356
Normal
-0.4
412
Normal
-0.4
958
Normal
-0.4
145
Tumor
-0.4
314
Normal
-0.4
298
Normal
-0.4
362
Normal
-0.4
714
Normal
-0.4
866
Normal
-0.4
513
Tumor
-0.4
868
Normal
-0.4
146
Normal
-0.4
554
Normal
-0.4
1016
Normal
-0.4
721
Tumor
-0.4
696
Normal
-0.5
385
Tumor
-0.5
716
Normal
-0.5
386
Normal
-0.5
518
Normal
-0.5
416
Normal
-0.5
1031
Tumor
-0.5
686
Normal
-0.5
727
Tumor
-0.5
1044
Normal
-0.5
327
Tumor
-0.5
432
Normal
-0.5
171
Tumor
-0.5
422
Normal
-0.5
141
Tumor
-0.5
461
Tumor
-0.5
1021
Tumor
-0.5
415
Tumor
-0.5
278
Normal
-0.5
873
Tumor
-0.5
212
Normal
-0.5
492
Normal
-0.5
436
Normal
-0.6
312
Normal
-0.6
536
Normal
-0.6
922
Normal
-0.6
136
Normal
-0.6
515
Tumor
-0.6
365
Tumor
-0.6
392
Normal
-0.6
444
Normal
-0.6
1046
Normal
-0.6
111
Normal
-0.6
695
Tumor
-0.6
528
Normal
-0.6
572
Normal
-0.6
435
Tumor
-0.6
975
Tumor
-0.6
332
Normal
-0.6
497
Tumor
-0.6
446
Normal
-0.6
267
Tumor
-0.6
1032
Normal
-0.6
277
Tumor
-0.6
114
Normal
-0.6
926
Normal
-0.6
968
Normal
-0.6
874
Normal
-0.6
1022
Normal
-0.6
964
Normal
-0.6
741
Tumor
-0.6
142
Normal
-0.6
286
Normal
-0.7
976
Normal
-0.7
918
Normal
-0.7
858
Normal
-0.7
186
Normal
-0.7
1028
Normal
-0.7
558
Normal
-0.7
817
Tumor
-0.7
138
Normal
-0.7
723
Tumor
-0.7
818
Normal
-0.7
481
Tumor
-0.7
564
Normal
-0.7
965
Tumor
-0.7
128
Normal
-0.7
981
Tumor
-0.7
113
Tumor
-0.7
462
Normal
-0.7
568
Normal
-0.7
448
Normal
-0.7
574
Normal
-0.8
132
Normal
-0.8
824
Normal
-0.8
924
Normal
-0.8
342
Normal
-0.8
728
Normal
-0.8
223
Tumor
-0.8
563
Tumor
-0.8
861
Tumor
-0.8
472
Normal
-0.8
232
Normal
-0.8
1013
Tumor
-0.9
738
Normal
-0.9
434
Normal
-0.9
786
Normal
-0.9
268
Normal
-0.9
916
Normal
-0.9
172
Normal
-0.9
852
Normal
-0.9
814
Normal
-0.9
698
Normal
-0.9
261
Tumor
-0.9
411
Tumor
-0.9
966
Normal
-0.9
816
Normal
-0.9
423
Tumor
-0.9
344
Normal
-0.9
1042
Normal
-0.9
148
Normal
-0.9
746
Normal
-0.9
525
Tumor
-0.9
778
Normal
-1.0
1045
Tumor
-1.0
756
Normal
-1.0
527
Tumor
-1.0
755
Tumor
-1.1
1015
Tumor
-1.1
857
Tumor
-1.1
162
Normal
-1.1
427
Tumor
-1.1
188
Normal
-1.1
262
Normal
-1.1
493
Tumor
-1.1
272
Normal
-1.1
258
Normal
-1.2
571
Tumor
-1.2
352
Normal
-1.2
777
Tumor
-1.2
395
Tumor
-1.3
921
Tumor
-1.3
785
Tumor
-1.3
354
Normal
-1.3
724
Normal
-1.4
358
Normal
-1.4
353
Tumor
-1.4
557
Tumor
-1.4
925
Tumor
-1.4
231
Tumor
-1.4
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
951
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
635
Tumor
N/A
877
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
665
Tumor
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
463
Tumor
N/A
222
Normal
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
