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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IGFBP7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
155.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1001.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
885.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
705.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
697.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
688.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
674.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
669.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
658.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
623.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
609.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
599.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
579.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
572.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
542.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
528.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
508.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
491.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
454.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
437.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
432.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
429.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
422.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
416.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
408.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
404.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
401.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
397.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
377.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
376.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
371.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
371.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
365.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
365.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
363.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
360.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
358.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
351.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
349.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
344.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
343.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
333.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
332.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
327.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
322.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
321.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
308.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
305.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
302.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
301.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
298.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
294.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
293.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
293.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
290.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
276.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
275.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
274.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
271.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
267.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
264.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
264.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
260.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
248.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
248.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
248.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
244.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
241.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
240.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
239.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
237.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
236.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
234.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
233.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
220.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
219.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
214.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
213.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
212.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
210.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
202.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
199.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
197.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
197.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
197.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
196.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
194.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
192.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
188.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
187.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
185.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
185.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
185.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
185.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
185.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
183.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
181.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
180.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
177.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
177.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
174.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
174.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
173.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
172.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
171.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
170.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
168.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
167.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
166.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
166.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
164.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
164.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
162.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
162.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
161.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
161.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
159.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
159.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
158.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
156.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
155.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
155.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
152.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
151.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
151.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
149.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
149.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
148.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
146.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
146.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
145.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
145.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
144.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
144.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
143.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
143.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
143.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
142.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
142.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
142.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
142.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
141.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
141.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
141.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
140.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
138.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
137.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
137.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
135.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
133.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
133.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
132.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
132.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
132.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
131.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
129.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
129.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
129.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
128.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
126.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
125.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
124.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
122.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
122.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
121.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
121.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
121.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
121.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
120.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
119.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
117.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
117.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
117.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
117.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
116.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
115.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
115.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
115.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
115.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
115.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
113.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
113.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
113.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
112.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
110.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
110.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
109.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
109.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
109.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
107.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
106.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
106.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
105.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
104.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
104.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
104.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
101.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
100.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
98.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
98.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
97.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
97.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
97.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
96.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
95.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
95.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
93.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
93.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
92.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
92.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
92.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
91.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
91.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
90.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
89.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
89.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
89.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
88.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
88.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
87.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
86.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
86.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
86.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
86.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
84.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
84.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
83.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
83.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
82.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
82.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
82.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
81.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
79.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
79.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
78.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
77.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
77.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
77.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
75.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
75.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
74.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
74.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
72.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
72.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
70.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
69.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
67.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
67.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
67.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
67.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
66.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
66.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
66.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
66.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
65.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
65.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
64.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
64.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
64.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
64.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
64.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
63.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
63.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
63.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
62.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
62.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
61.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
61.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
61.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
59.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
58.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
58.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
56.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
55.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
54.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
54.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
52.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
51.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
51.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
51.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
50.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
50.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
49.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
49.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
48.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
48.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
48.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
47.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
46.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
46.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
45.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
45.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
45.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
45.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
45.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
44.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
44.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
44.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
43.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
43.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
43.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
42.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
42.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
42.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
41.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
41.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
40.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
40.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
40.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
40.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
40.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
40.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
40.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
37.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
37.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
36.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
36.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
35.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
35.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
35.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
35.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
35.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
34.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
33.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
33.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
32.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
32.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
32.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
31.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
31.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
31.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
30.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
29.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
28.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
28.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
27.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
26.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
24.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
24.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
23.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
22.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
21.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IGFBP7 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
365.3
Number of samples
231
Samples
Sample
Description
TPM
DO23530
0 years, male, NA, stage:4, dead, 180 days
2664.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
1725.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1538.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
1435.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
1349.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
1327.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
1293.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1224.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
1201.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
1199.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
1174.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1164.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1108.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
1080.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
1072.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1014.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
967.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
956.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
943.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
942.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
928.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
907.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
901.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
887.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
877.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
854.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
849.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
846.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
832.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
824.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
821.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
814.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
797.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
796.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
777.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
758.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
743.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
736.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
686.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
686.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
673.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
654.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
622.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
614.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
614.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
613.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
607.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
606.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
570.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
568.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
568.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
567.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
558.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
556.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
549.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
543.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
536.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
522.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
498.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
477.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
466.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
463.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
444.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
426.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
423.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
420.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
417.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
406.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
404.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
400.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
395.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
394.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
384.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
371.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
370.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
362.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
356.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
355.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
354.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
349.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
349.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
346.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
344.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
343.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
342.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
340.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
338.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
329.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
319.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
314.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
308.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
303.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
302.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
302.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
301.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
300.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
286.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
285.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
284.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
282.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
282.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
277.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
271.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
268.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
268.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
260.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
256.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
256.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
254.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
250.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
249.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
246.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
234.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
234.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
233.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
231.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
224.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
219.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
219.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
217.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
216.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
211.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
210.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
210.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
205.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
200.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
195.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
193.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
193.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
193.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
190.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
179.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
178.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
169.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
165.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
164.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
162.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
162.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
161.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
161.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
159.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
159.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
156.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
155.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
155.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
154.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
153.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
152.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
152.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
146.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
141.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
140.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
139.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
137.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
129.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
128.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
128.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
126.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
125.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
123.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
122.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
120.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
120.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
118.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
117.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
116.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
116.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
115.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
115.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
114.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
111.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
111.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
107.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
106.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
105.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
102.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
100.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
96.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
95.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
93.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
92.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
91.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
88.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
87.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
84.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
83.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
82.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
81.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
79.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
79.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
76.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
75.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
75.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
75.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
74.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
73.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
73.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
72.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
72.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
69.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
69.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
69.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
68.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
65.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
63.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
60.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
59.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
59.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
58.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
56.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
56.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
55.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
52.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
50.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
50.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
50.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
49.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
49.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
48.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
48.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
47.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
45.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
44.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
44.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
41.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
37.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
33.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
31.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
545
Tumor
1.8
455
Tumor
1.7
975
Tumor
1.6
823
Tumor
1.6
185
Tumor
1.5
385
Tumor
1.5
881
Tumor
1.5
817
Tumor
1.4
536
Normal
1.4
311
Tumor
1.4
421
Tumor
1.3
355
Tumor
1.3
223
Tumor
1.3
535
Tumor
1.2
483
Tumor
1.2
671
Tumor
1.1
697
Tumor
1.0
297
Tumor
1.0
343
Tumor
1.0
563
Tumor
1.0
447
Tumor
1.0
943
Tumor
1.0
917
Tumor
0.9
375
Tumor
0.9
715
Tumor
0.9
492
Normal
0.9
883
Tumor
0.9
813
Tumor
0.9
192
Normal
0.9
363
Tumor
0.8
923
Tumor
0.8
383
Tumor
0.8
538
Normal
0.8
471
Tumor
0.8
814
Normal
0.8
461
Tumor
0.8
187
Tumor
0.8
444
Normal
0.8
493
Tumor
0.8
877
Tumor
0.8
331
Tumor
0.7
213
Tumor
0.7
525
Tumor
0.7
921
Tumor
0.7
713
Tumor
0.7
395
Tumor
0.7
1045
Tumor
0.7
785
Tumor
0.6
491
Tumor
0.6
1015
Tumor
0.6
498
Normal
0.6
211
Tumor
0.6
524
Normal
0.5
478
Normal
0.5
963
Tumor
0.5
913
Tumor
0.5
916
Normal
0.5
191
Tumor
0.4
857
Tumor
0.4
433
Tumor
0.4
145
Tumor
0.4
415
Tumor
0.4
224
Normal
0.4
393
Tumor
0.4
852
Normal
0.4
957
Tumor
0.4
327
Tumor
0.4
517
Tumor
0.3
277
Tumor
0.3
958
Normal
0.3
982
Normal
0.3
195
Tumor
0.3
365
Tumor
0.3
364
Normal
0.3
268
Normal
0.3
161
Tumor
0.3
497
Tumor
0.3
188
Normal
0.3
617
Tumor
0.3
137
Tumor
0.3
721
Tumor
0.3
515
Tumor
0.3
427
Tumor
0.2
284
Normal
0.2
861
Tumor
0.2
553
Tumor
0.2
448
Normal
0.2
641
Tumor
0.2
1044
Normal
0.2
976
Normal
0.2
467
Tumor
0.2
425
Tumor
0.2
874
Normal
0.2
386
Normal
0.2
473
Tumor
0.2
925
Tumor
0.2
394
Normal
0.1
344
Normal
0.1
413
Tumor
0.1
743
Tumor
0.1
1025
Tumor
0.1
353
Tumor
0.1
387
Tumor
0.1
981
Tumor
0.1
354
Normal
0.1
212
Normal
0.1
367
Tumor
0.1
451
Tumor
0.1
867
Tumor
0.1
141
Tumor
0.1
527
Tumor
0.1
126
Normal
0.1
463
Tumor
0.1
965
Tumor
0.0
516
Normal
0.0
695
Tumor
0.0
1028
Normal
0.0
135
Tumor
0.0
312
Normal
0.0
146
Normal
0.0
434
Normal
0.0
983
Tumor
0.0
816
Normal
0.0
627
Tumor
0.0
716
Normal
0.0
968
Normal
0.0
412
Normal
-0.1
392
Normal
-0.1
124
Normal
-0.1
416
Normal
-0.1
228
Normal
-0.1
636
Normal
-0.1
937
Tumor
-0.1
283
Tumor
-0.1
214
Normal
-0.1
558
Normal
-0.1
554
Normal
-0.1
956
Normal
-0.1
422
Normal
-0.1
368
Normal
-0.1
341
Tumor
-0.1
977
Tumor
-0.1
642
Normal
-0.1
362
Normal
-0.1
376
Normal
-0.1
514
Normal
-0.2
1031
Tumor
-0.2
361
Tumor
-0.2
474
Normal
-0.2
384
Normal
-0.2
952
Normal
-0.2
647
Tumor
-0.2
1043
Tumor
-0.2
546
Normal
-0.2
966
Normal
-0.2
136
Normal
-0.2
138
Normal
-0.2
1046
Normal
-0.2
513
Tumor
-0.2
528
Normal
-0.3
967
Tumor
-0.3
227
Tumor
-0.3
723
Tumor
-0.3
388
Normal
-0.3
741
Tumor
-0.3
873
Tumor
-0.3
142
Normal
-0.3
262
Normal
-0.3
328
Normal
-0.3
615
Tumor
-0.3
728
Normal
-0.3
396
Normal
-0.3
537
Tumor
-0.3
557
Tumor
-0.3
523
Tumor
-0.3
685
Tumor
-0.3
918
Normal
-0.3
786
Normal
-0.3
951
Tumor
-0.3
446
Normal
-0.3
258
Normal
-0.3
745
Tumor
-0.3
868
Normal
-0.3
742
Normal
-0.3
984
Normal
-0.4
366
Normal
-0.4
863
Tumor
-0.4
698
Normal
-0.4
221
Tumor
-0.4
127
Tumor
-0.4
665
Tumor
-0.4
755
Tumor
-0.4
572
Normal
-0.4
131
Tumor
-0.4
356
Normal
-0.4
953
Tumor
-0.4
628
Normal
-0.4
924
Normal
-0.4
218
Normal
-0.4
271
Tumor
-0.4
696
Normal
-0.4
443
Tumor
-0.4
526
Normal
-0.4
217
Tumor
-0.4
533
Tumor
-0.4
573
Tumor
-0.4
778
Normal
-0.4
722
Normal
-0.4
954
Normal
-0.4
944
Normal
-0.4
261
Tumor
-0.4
278
Normal
-0.4
286
Normal
-0.4
882
Normal
-0.4
686
Normal
-0.4
352
Normal
-0.5
724
Normal
-0.5
727
Tumor
-0.5
1041
Tumor
-0.5
468
Normal
-0.5
391
Tumor
-0.5
272
Normal
-0.5
884
Normal
-0.5
915
Tumor
-0.5
456
Normal
-0.5
662
Normal
-0.5
574
Normal
-0.5
132
Normal
-0.5
878
Normal
-0.5
428
Normal
-0.5
424
Normal
-0.5
672
Normal
-0.5
332
Normal
-0.5
618
Normal
-0.5
616
Normal
-0.5
231
Tumor
-0.5
414
Normal
-0.5
494
Normal
-0.5
818
Normal
-0.5
534
Normal
-0.5
664
Normal
-0.5
171
Tumor
-0.5
466
Normal
-0.5
777
Tumor
-0.5
431
Tumor
-0.5
914
Normal
-0.5
737
Tumor
-0.6
738
Normal
-0.6
113
Tumor
-0.6
518
Normal
-0.6
635
Tumor
-0.6
111
Normal
-0.6
432
Normal
-0.6
411
Tumor
-0.6
756
Normal
-0.6
744
Normal
-0.6
1032
Normal
-0.6
357
Tumor
-0.6
298
Normal
-0.6
477
Tumor
-0.6
426
Normal
-0.6
978
Normal
-0.6
114
Normal
-0.6
1013
Tumor
-0.7
666
Normal
-0.7
911
Tumor
-0.7
358
Normal
-0.7
746
Normal
-0.7
866
Normal
-0.7
257
Tumor
-0.7
435
Tumor
-0.7
488
Normal
-0.7
864
Normal
-0.7
342
Normal
-0.7
922
Normal
-0.7
912
Normal
-0.7
313
Tumor
-0.7
314
Normal
-0.7
472
Normal
-0.7
267
Tumor
-0.7
1042
Normal
-0.7
865
Tumor
-0.8
351
Tumor
-0.8
862
Normal
-0.8
564
Normal
-0.8
285
Tumor
-0.8
964
Normal
-0.8
222
Normal
-0.8
568
Normal
-0.8
423
Tumor
-0.8
148
Normal
-0.8
232
Normal
-0.8
147
Tumor
-0.8
661
Tumor
-0.8
436
Normal
-0.8
567
Tumor
-0.8
938
Normal
-0.8
452
Normal
-0.8
714
Normal
-0.8
186
Normal
-0.8
663
Tumor
-0.8
128
Normal
-0.9
464
Normal
-0.9
1022
Normal
-0.9
955
Tumor
-0.9
196
Normal
-0.9
465
Tumor
-0.9
648
Normal
-0.9
172
Normal
-0.9
1016
Normal
-0.9
1021
Tumor
-0.9
824
Normal
-0.9
462
Normal
-0.9
125
Tumor
-0.9
445
Tumor
-0.9
571
Tumor
-0.9
1026
Normal
-0.9
1014
Normal
-1.0
162
Normal
-1.0
851
Tumor
-1.0
926
Normal
-1.1
112
Tumor
-1.1
123
Tumor
-1.1
481
Tumor
-1.1
1027
Tumor
-1.1
484
Normal
-1.1
815
Tumor
-1.1
482
Normal
-1.2
487
Tumor
-1.2
858
Normal
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.