MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.3 nTPM
HPA Brain:45.4 nTPM
GTEx:67.3 nTPM
FANTOM5:34.8 Scaled Tags Per Million
Pig:54.2 nTPM
Mouse:42.0 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.0
2019 Male, age 18, unknown 45.5
2411 Female, age 72, unknown 43.8
1827 Male, age 72, unknown 41.6
2828 Female, age 72, unknown 39.4
1830 Male, age 51, unknown 35.2
1833 Male, age 53, unknown 35.2
2219 Male, age 76, both hemispheres 35.0
2586 Male, age 75, left hemisphere 34.2
1870 Female, age 42, unknown 33.0
2666 Male, age 74, left hemisphere 27.4
Dorsal raphe nucleus
nTPM: 41.7
2298 Female, age 72, unknown 53.7
2047 Male, age 72, unknown 41.3
2750 Male, age 76, both hemispheres 40.6
1828 Male, age 53, unknown 40.4
2016 Female, age 72, unknown 32.5
Inferior colliculus
nTPM: 35.3
2097 Female, age 72, unknown 45.5
1890 Male, age 53, unknown 34.6
1848 Female, age 42, unknown 34.2
2849 Male, age 72, unknown 27.1
Median raphe nucleus
nTPM: 45.4
2220 Male, age 76, midline 45.4
Periaquaductal grey, anterior
nTPM: 41.6
1795 Male, age 51, unknown 45.7
2502 Female, age 75, unknown 40.5
1947 Male, age 18, unknown 38.8
Periaquaductal grey, dorsal
nTPM: 33.0
1840 Male, age 53, unknown 33.8
2850 Male, age 76, both hemispheres 33.1
2464 Female, age 72, unknown 32.6
1831 Male, age 72, unknown 32.4
Periaquaductal grey, lateral
nTPM: 37.6
2272 Male, age 74, both hemispheres 42.6
2140 Male, age 76, both hemispheres 36.9
2053 Male, age 18, unknown 33.4
Pretectal area
nTPM: 43.9
2007 Male, age 72, unknown 58.1
1944 Female, age 72, unknown 50.4
1816 Male, age 51, unknown 49.4
1817 Female, age 42, unknown 47.8
2273 Male, age 74, both hemispheres 44.6
2224 Female, age 72, unknown 43.5
2667 Female, age 75, unknown 43.3
1815 Male, age 53, unknown 40.2
2316 Male, age 76, right hemisphere 39.8
2407 Male, age 75, both hemispheres 34.9
2825 Male, age 18, unknown 31.4
Red nucleus
nTPM: 37.0
2503 Female, age 72, unknown 43.0
2785 Male, age 18, unknown 43.0
2725 Female, age 75, unknown 39.7
2588 Male, age 74, left hemisphere 38.0
1821 Female, age 72, unknown 37.9
2769 Male, age 72, unknown 36.8
2227 Male, age 72, unknown 36.4
2584 Male, age 75, left hemisphere 36.2
1954 Female, age 42, unknown 35.9
2823 Male, age 76, right hemisphere 33.3
1904 Male, age 53, unknown 32.7
1865 Male, age 51, unknown 31.0
Substantia nigra
nTPM: 42.0
1916 Female, age 42, unknown 58.2
1851 Male, age 51, unknown 51.6
1941 Male, age 53, unknown 48.0
1889 Female, age 72, unknown 45.8
2241 Male, age 72, unknown 39.6
2590 Female, age 75, unknown 37.0
2583 Male, age 75, right hemisphere 36.8
2699 Male, age 18, unknown 36.8
2409 Female, age 72, unknown 36.3
2665 Male, age 74, both hemispheres 30.0
Superior colliculus
nTPM: 37.1
2261 Male, age 18, unknown 46.8
1796 Male, age 53, unknown 44.8
2087 Female, age 72, unknown 44.5
2668 Female, age 75, unknown 39.1
1895 Male, age 76, right hemisphere 36.6
1913 Female, age 42, unknown 35.6
1839 Male, age 51, unknown 32.9
1995 Male, age 72, unknown 32.9
2664 Male, age 75, both hemispheres 29.7
2587 Male, age 74, left hemisphere 28.7
Ventral tegmental area
nTPM: 43.2
2410 Female, age 72, unknown 57.9
2218 Male, age 76, both hemispheres 44.6
1915 Female, age 42, unknown 44.2
2021 Male, age 53, unknown 37.9
1942 Male, age 51, unknown 37.6
2223 Female, age 72, unknown 36.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 67.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.3
Samples: 139

Max nTPM: 132.3
Min nTPM: 23.9
Std nTPM: 18.3
Median nTPM: 63.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 132.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 116.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 111.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 111.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 106.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 100.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 100.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 99.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 99.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 98.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 98.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 34.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.8
FF:10158-103A5 76 years, female 34.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 54.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.3
Samples: 4

Max nTPM: 76.6
Min nTPM: 36.3
Sample A Female 76.6
Sample B Female 46.7
Sample C Male 53.4
Sample D Male 36.3
Midbrain
nTPM: 53.6
Samples: 4

Max nTPM: 61.5
Min nTPM: 46.0
Sample A Female 61.5
Sample B Female 51.8
Sample C Male 55.0
Sample D Male 46.0
Periaqueductal gray
nTPM: 44.1
Samples: 3

Max nTPM: 54.7
Min nTPM: 36.2
Sample B Female 41.5
Sample C Male 54.7
Sample D Male 36.2
Superior colliculi
nTPM: 54.2
Samples: 4

Max nTPM: 64.4
Min nTPM: 39.0
Sample A Female 64.4
Sample B Female 59.6
Sample C Male 53.8
Sample D Male 39.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 42.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.0
Samples: 4

Max nTPM: 48.5
Min nTPM: 36.3
Sample A Male 48.5
Sample B Male 36.3
Sample C Female 38.6
Sample D Female 44.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68545477 Antisense, RP_050120_01_A06, Mouse strain C57BL/6J (56 days, male) 0.2

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