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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HAAO is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
95.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
491.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
466.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
436.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
425.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
407.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
380.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
308.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
302.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
297.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
293.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
292.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
292.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
291.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
276.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
270.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
267.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
266.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
256.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
248.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
237.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
232.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
229.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
227.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
225.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
211.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
207.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
205.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
204.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
204.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
202.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
201.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
198.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
197.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
192.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
191.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
190.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
187.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
184.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
183.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
182.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
179.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
179.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
178.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
177.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
175.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
175.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
174.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
174.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
171.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
169.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
169.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
167.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
167.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
167.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
167.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
166.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
166.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
165.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
163.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
162.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
162.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
161.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
161.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
158.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
154.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
154.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
153.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
151.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
150.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
150.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
149.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
146.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
144.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
141.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
141.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
138.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
138.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
135.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
135.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
135.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
134.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
133.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
132.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
132.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
132.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
130.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
130.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
129.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
129.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
129.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
129.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
128.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
127.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
125.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
125.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
125.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
124.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
124.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
123.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
122.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
121.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
121.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
120.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
118.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
118.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
118.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
117.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
116.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
114.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
114.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
114.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
114.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
113.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
113.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
113.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
113.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
113.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
112.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
112.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
111.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
110.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
110.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
109.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
108.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
108.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
108.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
107.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
106.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
106.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
105.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
105.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
105.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
105.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
104.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
103.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
103.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
101.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
101.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
100.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
100.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
99.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
96.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
96.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
96.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
95.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
95.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
95.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
95.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
95.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
94.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
94.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
93.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
93.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
93.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
92.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
92.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
91.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
91.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
86.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
85.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
85.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
85.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
85.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
83.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
82.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
82.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
81.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
81.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
81.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
80.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
80.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
79.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
78.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
77.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
76.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
75.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
75.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
75.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
75.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
75.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
75.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
75.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
74.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
74.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
73.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
73.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
73.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
72.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
72.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
71.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
71.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
70.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
70.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
70.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
68.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
66.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
66.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
65.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
65.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
65.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
65.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
64.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
64.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
64.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
63.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
63.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
62.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
62.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
62.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
61.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
61.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
60.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
60.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
60.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
60.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
59.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
59.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
57.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
57.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
57.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
56.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
56.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
56.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
56.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
55.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
54.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
53.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
53.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
52.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
52.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
52.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
52.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
52.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
51.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
51.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
51.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
50.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
50.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
50.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
49.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
49.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
49.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
47.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
47.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
47.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
47.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
47.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
46.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
46.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
46.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
45.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
45.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
44.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
44.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
44.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
44.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
43.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
42.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
42.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
42.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
42.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
41.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
41.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
41.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
41.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
41.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
40.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
40.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
40.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
40.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
38.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
38.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
38.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
38.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
38.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
36.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
36.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
35.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
35.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
34.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
34.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
34.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
34.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
34.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
33.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
33.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
32.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
31.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
31.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
29.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
29.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
29.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
28.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
28.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
27.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
27.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
26.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
24.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
22.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
20.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HAAO is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
82.9
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
519.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
392.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
361.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
307.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
276.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
274.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
265.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
248.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
237.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
232.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
208.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
205.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
202.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
196.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
192.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
188.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
187.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
185.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
183.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
169.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
166.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
166.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
164.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
160.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
156.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
155.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
153.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
153.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
151.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
150.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
147.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
147.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
144.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
144.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
144.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
143.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
143.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
142.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
139.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
137.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
137.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
135.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
135.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
131.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
130.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
129.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
127.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
125.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
125.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
123.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
120.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
120.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
120.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
119.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
113.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
113.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
113.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
111.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
111.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
110.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
110.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
107.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
106.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
106.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
105.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
104.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
103.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
102.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
102.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
101.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
98.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
96.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
96.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
96.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
96.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
92.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
91.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
91.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
90.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
90.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
90.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
90.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
89.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
89.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
88.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
88.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
87.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
87.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
86.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
85.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
85.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
84.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
84.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
83.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
79.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
77.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
77.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
75.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
74.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
73.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
73.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
72.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
71.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
71.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
70.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
69.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
69.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
67.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
67.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
67.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
66.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
65.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
65.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
64.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
62.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
62.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
61.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
61.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
61.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
60.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
59.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
59.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
58.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
58.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
57.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
57.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
56.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
56.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
56.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
55.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
54.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
54.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
53.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
53.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
52.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
52.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
52.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
50.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
50.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
50.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
49.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
49.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
49.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
49.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
48.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
48.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
48.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
48.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
47.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
47.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
47.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
46.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
45.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
45.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
44.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
44.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
44.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
44.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
43.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
43.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
43.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
42.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
41.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
41.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
41.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
40.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
40.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
39.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
38.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
36.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
36.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
36.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
34.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
34.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
33.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
33.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
32.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
32.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
31.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
31.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
28.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
28.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
27.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
27.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
27.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
26.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
698
Normal
1.2
744
Normal
1.2
342
Normal
1.1
298
Normal
1.0
938
Normal
1.0
818
Normal
1.0
488
Normal
1.0
481
Tumor
1.0
186
Normal
0.9
484
Normal
0.9
332
Normal
0.9
1026
Normal
0.9
756
Normal
0.9
128
Normal
0.9
862
Normal
0.9
196
Normal
0.9
858
Normal
0.9
882
Normal
0.9
636
Normal
0.8
924
Normal
0.8
618
Normal
0.8
436
Normal
0.8
222
Normal
0.8
482
Normal
0.8
878
Normal
0.8
723
Tumor
0.8
534
Normal
0.8
394
Normal
0.8
546
Normal
0.8
912
Normal
0.8
452
Normal
0.8
1046
Normal
0.8
114
Normal
0.8
1022
Normal
0.8
568
Normal
0.7
388
Normal
0.7
465
Tumor
0.7
172
Normal
0.7
746
Normal
0.7
414
Normal
0.7
664
Normal
0.7
742
Normal
0.7
824
Normal
0.7
472
Normal
0.7
354
Normal
0.7
356
Normal
0.7
426
Normal
0.7
448
Normal
0.7
428
Normal
0.7
162
Normal
0.7
376
Normal
0.7
456
Normal
0.7
392
Normal
0.7
964
Normal
0.7
1014
Normal
0.7
786
Normal
0.6
738
Normal
0.6
954
Normal
0.6
462
Normal
0.6
314
Normal
0.6
466
Normal
0.6
412
Normal
0.6
146
Normal
0.6
716
Normal
0.6
926
Normal
0.6
464
Normal
0.6
1032
Normal
0.6
364
Normal
0.6
982
Normal
0.6
696
Normal
0.6
358
Normal
0.6
344
Normal
0.6
132
Normal
0.5
944
Normal
0.5
366
Normal
0.5
424
Normal
0.5
714
Normal
0.5
648
Normal
0.5
722
Normal
0.5
572
Normal
0.5
538
Normal
0.5
1016
Normal
0.5
785
Tumor
0.5
422
Normal
0.5
914
Normal
0.5
628
Normal
0.5
958
Normal
0.5
124
Normal
0.5
138
Normal
0.5
672
Normal
0.5
778
Normal
0.5
642
Normal
0.5
214
Normal
0.5
554
Normal
0.5
1042
Normal
0.4
136
Normal
0.4
218
Normal
0.4
278
Normal
0.4
111
Normal
0.4
884
Normal
0.4
866
Normal
0.4
272
Normal
0.4
666
Normal
0.4
148
Normal
0.4
142
Normal
0.4
662
Normal
0.4
446
Normal
0.4
695
Tumor
0.4
518
Normal
0.4
864
Normal
0.4
616
Normal
0.4
984
Normal
0.4
513
Tumor
0.4
1044
Normal
0.4
922
Normal
0.4
514
Normal
0.4
966
Normal
0.4
956
Normal
0.4
286
Normal
0.3
516
Normal
0.3
362
Normal
0.3
494
Normal
0.3
686
Normal
0.3
564
Normal
0.3
515
Tumor
0.3
574
Normal
0.3
384
Normal
0.3
498
Normal
0.3
258
Normal
0.3
432
Normal
0.3
212
Normal
0.3
435
Tumor
0.3
423
Tumor
0.3
976
Normal
0.3
1028
Normal
0.3
328
Normal
0.3
416
Normal
0.3
526
Normal
0.3
955
Tumor
0.3
952
Normal
0.3
126
Normal
0.3
627
Tumor
0.3
478
Normal
0.3
728
Normal
0.3
868
Normal
0.2
232
Normal
0.2
918
Normal
0.2
127
Tumor
0.2
816
Normal
0.2
284
Normal
0.2
352
Normal
0.2
528
Normal
0.1
1027
Tumor
0.1
368
Normal
0.1
365
Tumor
0.1
312
Normal
0.1
262
Normal
0.1
386
Normal
0.1
741
Tumor
0.1
874
Normal
0.0
558
Normal
0.0
224
Normal
0.0
468
Normal
0.0
916
Normal
0.0
727
Tumor
0.0
524
Normal
0.0
415
Tumor
0.0
857
Tumor
0.0
873
Tumor
0.0
474
Normal
0.0
434
Normal
-0.1
411
Tumor
-0.1
852
Normal
-0.1
327
Tumor
-0.1
357
Tumor
-0.1
444
Normal
-0.1
188
Normal
-0.1
968
Normal
-0.1
396
Normal
-0.1
978
Normal
-0.1
487
Tumor
-0.1
228
Normal
-0.1
192
Normal
-0.2
915
Tumor
-0.2
536
Normal
-0.2
268
Normal
-0.2
141
Tumor
-0.2
433
Tumor
-0.3
867
Tumor
-0.3
492
Normal
-0.3
217
Tumor
-0.3
863
Tumor
-0.3
112
Tumor
-0.3
647
Tumor
-0.3
617
Tumor
-0.3
981
Tumor
-0.3
477
Tumor
-0.3
341
Tumor
-0.4
963
Tumor
-0.4
445
Tumor
-0.4
1013
Tumor
-0.4
261
Tumor
-0.4
913
Tumor
-0.4
185
Tumor
-0.4
615
Tumor
-0.4
171
Tumor
-0.4
361
Tumor
-0.5
267
Tumor
-0.5
493
Tumor
-0.5
313
Tumor
-0.5
113
Tumor
-0.5
483
Tumor
-0.5
721
Tumor
-0.5
571
Tumor
-0.5
911
Tumor
-0.6
517
Tumor
-0.6
461
Tumor
-0.6
137
Tumor
-0.6
663
Tumor
-0.6
665
Tumor
-0.6
497
Tumor
-0.6
161
Tumor
-0.6
737
Tumor
-0.6
353
Tumor
-0.7
635
Tumor
-0.7
814
Normal
-0.7
943
Tumor
-0.7
145
Tumor
-0.7
755
Tumor
-0.7
195
Tumor
-0.7
861
Tumor
-0.7
883
Tumor
-0.7
147
Tumor
-0.7
823
Tumor
-0.7
563
Tumor
-0.7
1045
Tumor
-0.7
421
Tumor
-0.7
713
Tumor
-0.7
447
Tumor
-0.8
977
Tumor
-0.8
355
Tumor
-0.8
431
Tumor
-0.8
715
Tumor
-0.8
1043
Tumor
-0.8
123
Tumor
-0.8
881
Tumor
-0.8
191
Tumor
-0.8
953
Tumor
-0.8
813
Tumor
-0.9
923
Tumor
-0.9
641
Tumor
-0.9
363
Tumor
-0.9
451
Tumor
-0.9
1031
Tumor
-0.9
975
Tumor
-0.9
1041
Tumor
-0.9
393
Tumor
-0.9
1015
Tumor
-0.9
1025
Tumor
-1.0
937
Tumor
-1.0
925
Tumor
-1.0
777
Tumor
-1.0
231
Tumor
-1.0
533
Tumor
-1.0
227
Tumor
-1.0
413
Tumor
-1.0
427
Tumor
-1.1
525
Tumor
-1.1
257
Tumor
-1.1
917
Tumor
-1.1
463
Tumor
-1.1
745
Tumor
-1.1
685
Tumor
-1.1
221
Tumor
-1.1
387
Tumor
-1.1
557
Tumor
-1.1
187
Tumor
-1.1
443
Tumor
-1.1
877
Tumor
-1.1
213
Tumor
-1.1
967
Tumor
-1.2
297
Tumor
-1.2
473
Tumor
-1.2
391
Tumor
-1.2
467
Tumor
-1.2
277
Tumor
-1.2
921
Tumor
-1.2
527
Tumor
-1.2
271
Tumor
-1.2
851
Tumor
-1.2
951
Tumor
-1.2
553
Tumor
-1.2
125
Tumor
-1.3
425
Tumor
-1.3
343
Tumor
-1.3
383
Tumor
-1.3
491
Tumor
-1.3
957
Tumor
-1.3
724
Normal
-1.3
537
Tumor
-1.3
455
Tumor
-1.4
697
Tumor
-1.4
523
Tumor
-1.4
865
Tumor
-1.4
743
Tumor
-1.4
471
Tumor
-1.4
351
Tumor
-1.4
1021
Tumor
-1.4
367
Tumor
-1.5
135
Tumor
-1.5
567
Tumor
-1.5
131
Tumor
-1.5
815
Tumor
-1.6
965
Tumor
-1.6
545
Tumor
-1.6
671
Tumor
-1.6
817
Tumor
-1.6
311
Tumor
-1.6
223
Tumor
-1.6
661
Tumor
-1.6
331
Tumor
-1.7
983
Tumor
-1.7
375
Tumor
-1.7
395
Tumor
-1.8
573
Tumor
-1.9
535
Tumor
-1.9
211
Tumor
-1.9
385
Tumor
-1.9
285
Tumor
-1.9
283
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.