MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.2 nTPM
HPA Brain:22.5 nTPM
GTEx:8.2 nTPM
FANTOM5:1.3 Scaled Tags Per Million
Pig:15.5 nTPM
Mouse:19.9 nTPM
Allen mouse:12.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 22.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.5
2219 Male, age 76, both hemispheres 19.5
2019 Male, age 18, unknown 16.9
1827 Male, age 72, unknown 16.4
2411 Female, age 72, unknown 14.7
1833 Male, age 53, unknown 11.9
1870 Female, age 42, unknown 11.4
1830 Male, age 51, unknown 11.3
2586 Male, age 75, left hemisphere 9.3
2828 Female, age 72, unknown 8.0
2666 Male, age 74, left hemisphere 5.5
Dorsal raphe nucleus
nTPM: 18.8
2298 Female, age 72, unknown 31.5
2047 Male, age 72, unknown 17.9
2016 Female, age 72, unknown 16.8
2750 Male, age 76, both hemispheres 14.7
1828 Male, age 53, unknown 12.9
Inferior colliculus
nTPM: 13.6
1848 Female, age 42, unknown 15.6
2097 Female, age 72, unknown 14.7
2849 Male, age 72, unknown 13.8
1890 Male, age 53, unknown 10.4
Median raphe nucleus
nTPM: 22.5
2220 Male, age 76, midline 22.5
Periaquaductal grey, anterior
nTPM: 13.6
2502 Female, age 75, unknown 19.5
1795 Male, age 51, unknown 17.8
1947 Male, age 18, unknown 3.7
Periaquaductal grey, dorsal
nTPM: 14.8
1840 Male, age 53, unknown 16.2
2464 Female, age 72, unknown 15.4
2850 Male, age 76, both hemispheres 15.2
1831 Male, age 72, unknown 12.5
Periaquaductal grey, lateral
nTPM: 21.5
2272 Male, age 74, both hemispheres 37.3
2053 Male, age 18, unknown 14.9
2140 Male, age 76, both hemispheres 12.4
Pretectal area
nTPM: 19.7
2273 Male, age 74, both hemispheres 42.1
2007 Male, age 72, unknown 27.9
2825 Male, age 18, unknown 22.6
2224 Female, age 72, unknown 22.4
1816 Male, age 51, unknown 18.8
1815 Male, age 53, unknown 17.7
1817 Female, age 42, unknown 16.0
1944 Female, age 72, unknown 14.2
2667 Female, age 75, unknown 11.9
2407 Male, age 75, both hemispheres 11.5
2316 Male, age 76, right hemisphere 11.4
Red nucleus
nTPM: 14.9
1954 Female, age 42, unknown 19.9
1821 Female, age 72, unknown 17.5
2503 Female, age 72, unknown 16.6
2785 Male, age 18, unknown 16.5
2588 Male, age 74, left hemisphere 16.3
2769 Male, age 72, unknown 16.0
2823 Male, age 76, right hemisphere 15.5
2227 Male, age 72, unknown 15.4
1904 Male, age 53, unknown 13.9
1865 Male, age 51, unknown 11.9
2725 Female, age 75, unknown 10.3
2584 Male, age 75, left hemisphere 8.5
Substantia nigra
nTPM: 13.3
1941 Male, age 53, unknown 24.4
1889 Female, age 72, unknown 17.8
2241 Male, age 72, unknown 13.8
1916 Female, age 42, unknown 13.5
2699 Male, age 18, unknown 12.5
2665 Male, age 74, both hemispheres 12.4
2409 Female, age 72, unknown 11.8
1851 Male, age 51, unknown 10.4
2590 Female, age 75, unknown 10.0
2583 Male, age 75, right hemisphere 6.1
Superior colliculus
nTPM: 14.0
2261 Male, age 18, unknown 22.7
2668 Female, age 75, unknown 19.8
2664 Male, age 75, both hemispheres 17.8
1895 Male, age 76, right hemisphere 17.5
2087 Female, age 72, unknown 14.4
2587 Male, age 74, left hemisphere 13.3
1839 Male, age 51, unknown 12.2
1796 Male, age 53, unknown 11.3
1913 Female, age 42, unknown 6.1
1995 Male, age 72, unknown 5.1
Ventral tegmental area
nTPM: 14.0
2410 Female, age 72, unknown 18.1
1915 Female, age 42, unknown 15.7
2218 Male, age 76, both hemispheres 14.8
2021 Male, age 53, unknown 13.8
1942 Male, age 51, unknown 13.6
2223 Female, age 72, unknown 7.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.2
Samples: 139

Max nTPM: 50.2
Min nTPM: 0.5
Std nTPM: 6.9
Median nTPM: 6.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 50.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 30.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 29.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 24.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 24.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 22.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 20.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 18.4
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 17.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 17.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 17.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.3
FF:10158-103A5 76 years, female 1.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 15.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.5
Samples: 4

Max nTPM: 25.7
Min nTPM: 6.3
Sample A Female 18.5
Sample B Female 11.4
Sample C Male 25.7
Sample D Male 6.3
Midbrain
nTPM: 9.6
Samples: 4

Max nTPM: 13.5
Min nTPM: 2.5
Sample A Female 2.5
Sample B Female 10.7
Sample C Male 11.5
Sample D Male 13.5
Periaqueductal gray
nTPM: 7.3
Samples: 3

Max nTPM: 8.7
Min nTPM: 6.0
Sample B Female 7.1
Sample C Male 8.7
Sample D Male 6.0
Superior colliculi
nTPM: 8.1
Samples: 4

Max nTPM: 10.2
Min nTPM: 4.9
Sample A Female 10.2
Sample B Female 7.8
Sample C Male 4.9
Sample D Male 9.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.9
Samples: 4

Max nTPM: 20.9
Min nTPM: 18.8
Sample A Male 20.1
Sample B Male 19.8
Sample C Female 18.8
Sample D Female 20.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.0
71610854 Antisense, RP_050927_02_A03, Mouse strain C57BL/6J (56 days, male) 12.0

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