HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.4 nTPM
HPA Brain:28.2 nTPM
GTEx:10.4 nTPM
FANTOM5:7.4 Scaled Tags Per Million
Pig:3.3 nTPM
Mouse:10.3 nTPM
Allen mouse:13.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 28.2
Sample id Sample description nTPM
Hippocampus
nTPM: 18.3
2621 Female, age 67, right hemisphere 32.4
1898 Male, age 80, left hemisphere 20.3
2148 Female, age 91, left hemisphere 20.0
1855 Male, age 76, left hemisphere 16.7
1911 Female, age 85, right hemisphere 13.4
2529 Female, age 94, left hemisphere 7.2
Dentate gyrus
nTPM: 24.6
2531 Female, age 67, both hemispheres 30.5
1927 Female, age 91, both hemispheres 26.3
2530 Female, age 94, left hemisphere 24.5
2010 Male, age 76, both hemispheres 24.3
2528 Male, age 74, both hemispheres 24.1
2246 Female, age 85, both hemispheres 17.9
Entorhinal gyrus
nTPM: 6.5
2686 Male, age 75, right hemisphere 9.4
1787 Male, age 76, left hemisphere 6.8
2117 Female, age 91, right hemisphere 6.8
2764 Male, age 80, right hemisphere 6.0
1938 Female, age 85, left hemisphere 5.5
2613 Female, age 94, left hemisphere 4.8
Hippocampus, CA1
nTPM: 28.2
2749 Male, age 80, left hemisphere 54.7
2045 Male, age 76, both hemispheres 26.3
1873 Female, age 85, both hemispheres 22.4
2527 Male, age 74, both hemispheres 19.2
2082 Female, age 91, right hemisphere 18.3
Hippocampus, CA2
nTPM: 16.2
1963 Male, age 80, left hemisphere 26.2
2249 Male, age 74, both hemispheres 21.3
1940 Female, age 85, left hemisphere 16.0
1892 Male, age 76, both hemispheres 14.7
2437 Female, age 94, left hemisphere 9.8
2113 Female, age 91, right hemisphere 9.3
Hippocampus, CA3
nTPM: 16.0
2861 Female, age 67, both hemispheres 30.8
2620 Female, age 94, left hemisphere 16.7
2137 Male, age 80, left hemisphere 15.3
1867 Male, age 76, both hemispheres 13.8
2436 Male, age 74, both hemispheres 10.6
1891 Female, age 85, both hemispheres 8.7
Parahippocampal cortex
nTPM: 6.3
2250 Female, age 67, right hemisphere 10.1
2245 Female, age 91, both hemispheres 8.6
1933 Female, age 85, both hemispheres 7.3
2622 Female, age 67, right hemisphere 7.3
1990 Female, age 91, right hemisphere 6.4
1850 Male, age 80, both hemispheres 6.2
2693 Female, age 94, both hemispheres 5.6
2532 Female, age 72, left hemisphere 4.3
2018 Male, age 76, both hemispheres 4.0
2692 Male, age 74, both hemispheres 3.6
Perirhinal gyrus
nTPM: 8.0
2521 Female, age 94, right hemisphere 9.0
2848 Male, age 76, right hemisphere 8.4
1794 Male, age 80, right hemisphere 8.1
1847 Female, age 91, left hemisphere 7.9
1841 Female, age 85, right hemisphere 6.7
Subiculum
nTPM: 8.3
2729 Female, age 91, right hemisphere 15.3
1901 Male, age 80, both hemispheres 9.3
2042 Male, age 76, both hemispheres 8.2
2438 Female, age 94, left hemisphere 6.2
1977 Female, age 85, both hemispheres 6.0
2619 Male, age 74, both hemispheres 4.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 10.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.4
Samples: 197

Max nTPM: 36.5
Min nTPM: 0.9
Std nTPM: 7.6
Median nTPM: 8.4
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 36.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 35.4
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 35.3
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 34.9
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 31.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 31.1
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 30.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 29.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 27.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 25.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 23.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 7.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 7.4
FF:10169-103B7 60 years, female 9.3
FF:10153-102I9 76 years, female 5.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 3.3
Pig sample Sample description nTPM
Subiculum
nTPM: 2.8
Samples: 4

Max nTPM: 3.1
Min nTPM: 1.8
Sample A Female 1.8
Sample B Female 3.0
Sample C Male 3.1
Sample D Male 3.1
Dorsal hippocampus
nTPM: 3.3
Samples: 4

Max nTPM: 5.7
Min nTPM: 2.3
Sample A Female 2.3
Sample B Female 2.8
Sample C Male 2.3
Sample D Male 5.7
Entorhinal cortex
nTPM: 3.1
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.8
Sample A Female 3.2
Sample B Female 2.8
Sample C Male 2.8
Sample D Male 3.6
Ventral hippocampus
nTPM: 3.3
Samples: 4

Max nTPM: 4.0
Min nTPM: 2.5
Sample A Female 3.3
Sample B Female 4.0
Sample C Male 3.4
Sample D Male 2.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 10.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 10.3
Samples: 4

Max nTPM: 13.5
Min nTPM: 9.0
Sample A Male 9.5
Sample B Male 9.2
Sample C Female 9.0
Sample D Female 13.5
Hippocampal formation
nTPM: 3.7
Samples: 4

Max nTPM: 5.1
Min nTPM: 2.6
Sample A Male 5.1
Sample B Male 2.9
Sample C Female 2.6
Sample D Female 4.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 13.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.1
71610854 Antisense, RP_050927_02_A03, Mouse strain C57BL/6J (56 days, male) 13.1

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