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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DENND2D is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
51.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
30.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
2.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DENND2D is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.7
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
63.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
55.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
45.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
37.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
36.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
33.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
31.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
28.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
395
Tumor
1.3
957
Tumor
1.2
553
Tumor
1.0
192
Normal
0.8
724
Normal
0.8
695
Tumor
0.8
312
Normal
0.7
737
Tumor
0.7
188
Normal
0.6
536
Normal
0.6
211
Tumor
0.6
262
Normal
0.6
1044
Normal
0.6
524
Normal
0.6
268
Normal
0.6
311
Tumor
0.6
272
Normal
0.6
1042
Normal
0.6
727
Tumor
0.5
1043
Tumor
0.5
968
Normal
0.5
714
Normal
0.5
716
Normal
0.5
723
Tumor
0.5
538
Normal
0.5
956
Normal
0.5
618
Normal
0.5
852
Normal
0.5
456
Normal
0.5
393
Tumor
0.5
966
Normal
0.5
218
Normal
0.5
738
Normal
0.5
468
Normal
0.5
223
Tumor
0.5
978
Normal
0.5
366
Normal
0.5
217
Tumor
0.5
984
Normal
0.5
491
Tumor
0.5
698
Normal
0.4
642
Normal
0.4
862
Normal
0.4
1022
Normal
0.4
728
Normal
0.4
224
Normal
0.4
662
Normal
0.4
467
Tumor
0.4
195
Tumor
0.4
981
Tumor
0.4
686
Normal
0.4
447
Tumor
0.4
416
Normal
0.4
375
Tumor
0.4
478
Normal
0.4
434
Normal
0.4
492
Normal
0.4
412
Normal
0.4
384
Normal
0.4
444
Normal
0.4
212
Normal
0.4
498
Normal
0.4
462
Normal
0.4
1026
Normal
0.4
546
Normal
0.4
1021
Tumor
0.4
446
Normal
0.4
358
Normal
0.4
396
Normal
0.4
967
Tumor
0.4
958
Normal
0.4
214
Normal
0.4
951
Tumor
0.4
516
Normal
0.3
746
Normal
0.3
868
Normal
0.3
884
Normal
0.3
362
Normal
0.3
392
Normal
0.3
472
Normal
0.3
786
Normal
0.3
388
Normal
0.3
474
Normal
0.3
1016
Normal
0.3
126
Normal
0.3
535
Tumor
0.3
386
Normal
0.3
518
Normal
0.3
916
Normal
0.3
1014
Normal
0.3
922
Normal
0.3
353
Tumor
0.3
128
Normal
0.3
755
Tumor
0.3
114
Normal
0.3
297
Tumor
0.3
415
Tumor
0.3
1025
Tumor
0.3
298
Normal
0.3
628
Normal
0.3
464
Normal
0.3
514
Normal
0.3
455
Tumor
0.3
191
Tumor
0.3
955
Tumor
0.3
422
Normal
0.3
528
Normal
0.3
814
Normal
0.3
664
Normal
0.3
982
Normal
0.2
332
Normal
0.2
721
Tumor
0.2
258
Normal
0.2
944
Normal
0.2
742
Normal
0.2
976
Normal
0.2
817
Tumor
0.2
722
Normal
0.2
756
Normal
0.2
278
Normal
0.2
861
Tumor
0.2
1015
Tumor
0.2
466
Normal
0.2
452
Normal
0.2
328
Normal
0.2
125
Tumor
0.2
284
Normal
0.2
924
Normal
0.2
314
Normal
0.2
921
Tumor
0.2
428
Normal
0.2
364
Normal
0.2
1031
Tumor
0.2
487
Tumor
0.2
228
Normal
0.2
148
Normal
0.2
926
Normal
0.2
482
Normal
0.2
286
Normal
0.2
778
Normal
0.2
965
Tumor
0.2
172
Normal
0.2
213
Tumor
0.2
433
Tumor
0.2
883
Tumor
0.2
424
Normal
0.2
943
Tumor
0.2
917
Tumor
0.2
666
Normal
0.1
1028
Normal
0.1
874
Normal
0.1
964
Normal
0.1
142
Normal
0.1
436
Normal
0.1
385
Tumor
0.1
124
Normal
0.1
823
Tumor
0.1
877
Tumor
0.1
111
Normal
0.1
558
Normal
0.1
497
Tumor
0.1
494
Normal
0.1
864
Normal
0.1
222
Normal
0.1
232
Normal
0.1
545
Tumor
0.1
1046
Normal
0.1
914
Normal
0.1
448
Normal
0.1
954
Normal
0.1
1027
Tumor
0.1
355
Tumor
0.1
573
Tumor
0.1
365
Tumor
0.1
414
Normal
0.1
343
Tumor
0.1
137
Tumor
0.1
882
Normal
0.1
527
Tumor
0.1
517
Tumor
0.1
816
Normal
0.1
1032
Normal
0.1
344
Normal
0.1
354
Normal
0.1
672
Normal
0.1
257
Tumor
0.1
918
Normal
0.1
878
Normal
0.1
743
Tumor
0.0
341
Tumor
0.0
221
Tumor
0.0
785
Tumor
0.0
113
Tumor
0.0
394
Normal
0.0
616
Normal
0.0
196
Normal
0.0
186
Normal
0.0
857
Tumor
0.0
432
Normal
0.0
383
Tumor
0.0
824
Normal
0.0
477
Tumor
0.0
481
Tumor
0.0
866
Normal
0.0
777
Tumor
0.0
952
Normal
0.0
696
Normal
0.0
636
Normal
0.0
361
Tumor
0.0
671
Tumor
0.0
818
Normal
0.0
261
Tumor
0.0
744
Normal
0.0
342
Normal
0.0
131
Tumor
0.0
665
Tumor
0.0
146
Normal
-0.1
285
Tumor
-0.1
471
Tumor
-0.1
136
Normal
-0.1
648
Normal
-0.1
376
Normal
-0.1
368
Normal
-0.1
858
Normal
-0.1
488
Normal
-0.1
162
Normal
-0.1
465
Tumor
-0.1
461
Tumor
-0.1
574
Normal
-0.1
912
Normal
-0.1
185
Tumor
-0.1
426
Normal
-0.1
141
Tumor
-0.1
953
Tumor
-0.1
534
Normal
-0.1
525
Tumor
-0.1
138
Normal
-0.1
271
Tumor
-0.1
352
Normal
-0.1
975
Tumor
-0.1
187
Tumor
-0.2
421
Tumor
-0.2
867
Tumor
-0.2
564
Normal
-0.2
963
Tumor
-0.2
745
Tumor
-0.2
145
Tumor
-0.2
443
Tumor
-0.2
813
Tumor
-0.2
161
Tumor
-0.2
865
Tumor
-0.2
881
Tumor
-0.2
515
Tumor
-0.2
484
Normal
-0.2
356
Normal
-0.2
925
Tumor
-0.2
367
Tumor
-0.3
685
Tumor
-0.3
112
Tumor
-0.3
267
Tumor
-0.3
473
Tumor
-0.3
713
Tumor
-0.3
938
Normal
-0.3
387
Tumor
-0.3
526
Normal
-0.3
391
Tumor
-0.3
617
Tumor
-0.3
615
Tumor
-0.3
635
Tumor
-0.3
1045
Tumor
-0.3
313
Tumor
-0.3
132
Normal
-0.3
863
Tumor
-0.3
641
Tumor
-0.3
663
Tumor
-0.3
913
Tumor
-0.3
627
Tumor
-0.3
568
Normal
-0.3
697
Tumor
-0.3
463
Tumor
-0.3
873
Tumor
-0.3
554
Normal
-0.3
923
Tumor
-0.4
563
Tumor
-0.4
661
Tumor
-0.4
283
Tumor
-0.4
572
Normal
-0.4
147
Tumor
-0.4
327
Tumor
-0.4
523
Tumor
-0.4
493
Tumor
-0.4
331
Tumor
-0.4
277
Tumor
-0.4
413
Tumor
-0.4
411
Tumor
-0.4
231
Tumor
-0.4
451
Tumor
-0.4
741
Tumor
-0.4
537
Tumor
-0.5
135
Tumor
-0.5
425
Tumor
-0.5
1041
Tumor
-0.5
123
Tumor
-0.5
483
Tumor
-0.5
423
Tumor
-0.5
983
Tumor
-0.6
431
Tumor
-0.6
715
Tumor
-0.6
567
Tumor
-0.6
227
Tumor
-0.7
571
Tumor
-0.7
435
Tumor
-0.7
127
Tumor
-0.7
357
Tumor
-0.7
363
Tumor
-0.7
513
Tumor
-0.7
647
Tumor
-0.8
1013
Tumor
-0.8
915
Tumor
-0.8
851
Tumor
-0.8
977
Tumor
-0.8
557
Tumor
-0.8
351
Tumor
-0.8
815
Tumor
-0.8
445
Tumor
-0.9
427
Tumor
-1.0
911
Tumor
-1.1
171
Tumor
-1.1
533
Tumor
-1.2
937
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
