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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NCSTN is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
43.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
177.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
150.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
130.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
128.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
122.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
118.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
117.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
112.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
111.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
107.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
106.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
103.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
103.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
102.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
101.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
97.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
97.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
94.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
93.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
93.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
91.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
91.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
91.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
91.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
90.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
85.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
83.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
82.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
82.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
80.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
80.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
78.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
77.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
77.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
77.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
75.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
75.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
74.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
73.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
73.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
72.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
71.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
71.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
70.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
70.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
69.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
69.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
68.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
68.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
68.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
66.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
65.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
65.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
64.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
64.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
64.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
64.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
64.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
64.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
63.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
63.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
63.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
62.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
62.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
62.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
62.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
62.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
62.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
61.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
60.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
60.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
60.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
60.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
59.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
59.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
58.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
58.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
58.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
58.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
58.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
58.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
58.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
57.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
57.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
57.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
56.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
56.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
56.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
55.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
54.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
54.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
54.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
54.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
54.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
54.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
54.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
54.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
54.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
54.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
54.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
54.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
53.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
53.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
53.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
53.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
52.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
52.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
52.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
52.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
52.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
51.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
51.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
51.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
50.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
50.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
50.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
50.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
49.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
49.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
49.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
49.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
49.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
48.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
48.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
48.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
48.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
48.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
48.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
47.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
47.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
47.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
46.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
46.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
46.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
45.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
45.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
45.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
45.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
45.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
44.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
44.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
43.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
43.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
43.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
43.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
43.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
43.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
43.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
43.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
43.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
43.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
43.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
42.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
42.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
42.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
42.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
42.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
42.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
42.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
42.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
42.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
42.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
42.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
41.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
41.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
41.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
41.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
40.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
40.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
40.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
40.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
40.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
40.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
39.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
39.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
39.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
39.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
39.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
39.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
38.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
38.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
38.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
38.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
38.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
37.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
37.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
36.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
36.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
36.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
36.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
36.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
36.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
35.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
35.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
35.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
35.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
34.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
34.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
34.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
34.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
34.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
34.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
34.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
33.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
33.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
33.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
33.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
33.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
33.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
33.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
33.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
32.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
32.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
32.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
32.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
32.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
32.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
32.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
31.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
31.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
31.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
31.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
31.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
30.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
30.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
30.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
30.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
29.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
29.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
29.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
29.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
28.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
28.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
28.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
28.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
28.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
27.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
27.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
27.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
27.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
26.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
26.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
25.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
24.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
23.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
23.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
23.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
17.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NCSTN is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
48.4
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
246.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
243.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
156.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
132.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
104.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
101.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
99.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
98.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
97.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
96.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
93.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
85.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
84.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
84.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
83.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
82.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
82.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
82.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
81.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
80.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
78.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
77.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
77.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
76.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
75.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
74.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
73.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
72.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
71.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
71.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
68.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
68.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
68.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
68.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
68.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
67.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
67.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
67.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
67.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
66.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
66.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
66.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
66.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
65.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
64.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
64.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
64.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
64.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
63.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
63.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
62.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
62.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
61.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
61.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
60.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
58.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
58.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
58.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
58.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
57.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
57.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
57.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
57.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
57.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
57.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
56.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
56.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
56.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
56.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
55.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
55.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
54.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
54.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
53.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
53.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
53.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
53.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
52.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
52.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
52.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
51.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
51.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
51.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
51.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
51.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
50.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
50.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
49.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
49.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
49.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
49.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
48.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
48.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
48.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
48.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
47.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
47.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
47.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
46.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
46.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
46.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
46.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
46.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
45.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
45.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
45.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
45.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
45.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
44.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
44.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
44.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
44.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
44.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
43.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
43.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
43.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
43.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
43.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
42.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
42.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
42.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
41.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
41.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
41.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
40.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
40.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
40.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
39.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
39.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
39.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
38.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
38.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
38.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
38.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
38.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
38.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
38.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
38.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
37.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
37.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
37.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
36.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
36.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
36.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
36.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
35.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
35.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
35.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
35.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
34.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
34.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
34.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
34.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
34.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
34.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
33.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
33.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
33.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
33.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
33.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
33.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
33.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
32.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
32.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
32.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
31.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
31.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
31.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
31.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
30.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
30.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
30.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
30.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
30.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
29.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
29.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
29.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
29.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
27.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
26.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
26.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
26.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
26.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
25.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
24.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
23.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
22.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
21.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
1.1
147
Tumor
1.0
451
Tumor
1.0
777
Tumor
1.0
343
Tumor
0.9
527
Tumor
0.8
567
Tumor
0.8
745
Tumor
0.8
385
Tumor
0.8
471
Tumor
0.8
573
Tumor
0.7
125
Tumor
0.7
427
Tumor
0.7
257
Tumor
0.7
533
Tumor
0.7
231
Tumor
0.7
445
Tumor
0.6
313
Tumor
0.6
435
Tumor
0.6
351
Tumor
0.6
221
Tumor
0.5
271
Tumor
0.5
357
Tumor
0.5
743
Tumor
0.5
863
Tumor
0.5
387
Tumor
0.5
813
Tumor
0.5
123
Tumor
0.5
131
Tumor
0.5
697
Tumor
0.5
227
Tumor
0.5
191
Tumor
0.4
977
Tumor
0.4
213
Tumor
0.4
975
Tumor
0.4
877
Tumor
0.4
135
Tumor
0.4
1027
Tumor
0.4
361
Tumor
0.4
685
Tumor
0.4
663
Tumor
0.4
171
Tumor
0.4
724
Normal
0.4
953
Tumor
0.4
553
Tumor
0.4
715
Tumor
0.4
671
Tumor
0.4
647
Tumor
0.3
411
Tumor
0.3
283
Tumor
0.3
161
Tumor
0.3
493
Tumor
0.3
1021
Tumor
0.3
413
Tumor
0.3
383
Tumor
0.3
515
Tumor
0.3
571
Tumor
0.3
525
Tumor
0.3
911
Tumor
0.3
393
Tumor
0.3
881
Tumor
0.3
487
Tumor
0.3
817
Tumor
0.2
185
Tumor
0.2
741
Tumor
0.2
187
Tumor
0.2
721
Tumor
0.2
713
Tumor
0.2
112
Tumor
0.2
443
Tumor
0.2
473
Tumor
0.2
641
Tumor
0.2
467
Tumor
0.2
635
Tumor
0.2
491
Tumor
0.2
857
Tumor
0.2
517
Tumor
0.2
363
Tumor
0.2
737
Tumor
0.2
217
Tumor
0.2
297
Tumor
0.2
277
Tumor
0.2
965
Tumor
0.2
883
Tumor
0.2
145
Tumor
0.2
814
Normal
0.2
1043
Tumor
0.2
615
Tumor
0.2
557
Tumor
0.2
913
Tumor
0.2
563
Tumor
0.2
211
Tumor
0.1
365
Tumor
0.1
867
Tumor
0.1
661
Tumor
0.1
823
Tumor
0.1
463
Tumor
0.1
727
Tumor
0.1
433
Tumor
0.1
426
Normal
0.1
917
Tumor
0.1
432
Normal
0.1
1015
Tumor
0.1
127
Tumor
0.1
873
Tumor
0.1
861
Tumor
0.1
461
Tumor
0.1
367
Tumor
0.1
1013
Tumor
0.1
851
Tumor
0.1
755
Tumor
0.1
223
Tumor
0.1
455
Tumor
0.0
665
Tumor
0.0
428
Normal
0.0
483
Tumor
0.0
395
Tumor
0.0
497
Tumor
0.0
963
Tumor
0.0
368
Normal
0.0
983
Tumor
0.0
311
Tumor
0.0
421
Tumor
0.0
391
Tumor
0.0
951
Tumor
0.0
188
Normal
0.0
915
Tumor
0.0
414
Normal
0.0
267
Tumor
0.0
477
Tumor
0.0
375
Tumor
0.0
195
Tumor
0.0
137
Tumor
0.0
376
Normal
-0.1
447
Tumor
-0.1
1025
Tumor
-0.1
545
Tumor
-0.1
424
Normal
-0.1
436
Normal
-0.1
695
Tumor
-0.1
384
Normal
-0.1
261
Tumor
-0.1
141
Tumor
-0.1
431
Tumor
-0.1
341
Tumor
-0.1
865
Tumor
-0.1
456
Normal
-0.1
415
Tumor
-0.1
366
Normal
-0.1
285
Tumor
-0.1
162
Normal
-0.1
444
Normal
-0.1
172
Normal
-0.1
446
Normal
-0.1
967
Tumor
-0.1
423
Tumor
-0.1
1031
Tumor
-0.1
481
Tumor
-0.1
268
Normal
-0.1
464
Normal
-0.1
523
Tumor
-0.1
943
Tumor
-0.1
468
Normal
-0.1
196
Normal
-0.1
148
Normal
-0.1
262
Normal
-0.1
452
Normal
-0.1
422
Normal
-0.1
222
Normal
-0.1
466
Normal
-0.1
186
Normal
-0.1
136
Normal
-0.1
923
Tumor
-0.1
362
Normal
-0.1
537
Tumor
-0.1
218
Normal
-0.1
672
Normal
-0.2
528
Normal
-0.2
921
Tumor
-0.2
126
Normal
-0.2
331
Tumor
-0.2
434
Normal
-0.2
356
Normal
-0.2
314
Normal
-0.2
617
Tumor
-0.2
358
Normal
-0.2
978
Normal
-0.2
396
Normal
-0.2
192
Normal
-0.2
124
Normal
-0.2
353
Tumor
-0.2
785
Tumor
-0.2
114
Normal
-0.2
344
Normal
-0.2
128
Normal
-0.2
327
Tumor
-0.2
392
Normal
-0.2
914
Normal
-0.2
864
Normal
-0.2
756
Normal
-0.2
786
Normal
-0.2
258
Normal
-0.2
513
Tumor
-0.2
1041
Tumor
-0.2
1045
Tumor
-0.2
111
Normal
-0.2
312
Normal
-0.2
214
Normal
-0.2
146
Normal
-0.2
534
Normal
-0.2
662
Normal
-0.2
925
Tumor
-0.3
627
Tumor
-0.3
388
Normal
-0.3
132
Normal
-0.3
1014
Normal
-0.3
648
Normal
-0.3
952
Normal
-0.3
142
Normal
-0.3
666
Normal
-0.3
394
Normal
-0.3
386
Normal
-0.3
232
Normal
-0.3
868
Normal
-0.3
328
Normal
-0.3
332
Normal
-0.3
482
Normal
-0.3
874
Normal
-0.3
478
Normal
-0.3
498
Normal
-0.3
664
Normal
-0.3
564
Normal
-0.3
778
Normal
-0.3
412
Normal
-0.3
224
Normal
-0.3
538
Normal
-0.3
416
Normal
-0.3
866
Normal
-0.3
272
Normal
-0.3
574
Normal
-0.3
472
Normal
-0.3
342
Normal
-0.3
462
Normal
-0.3
518
Normal
-0.3
364
Normal
-0.3
138
Normal
-0.3
878
Normal
-0.3
568
Normal
-0.3
278
Normal
-0.3
955
Tumor
-0.3
862
Normal
-0.3
298
Normal
-0.3
488
Normal
-0.3
514
Normal
-0.3
912
Normal
-0.3
1016
Normal
-0.4
746
Normal
-0.4
957
Tumor
-0.4
526
Normal
-0.4
956
Normal
-0.4
966
Normal
-0.4
113
Tumor
-0.4
554
Normal
-0.4
984
Normal
-0.4
354
Normal
-0.4
558
Normal
-0.4
944
Normal
-0.4
355
Tumor
-0.4
954
Normal
-0.4
535
Tumor
-0.4
1042
Normal
-0.4
516
Normal
-0.4
616
Normal
-0.4
696
Normal
-0.4
722
Normal
-0.4
465
Tumor
-0.4
884
Normal
-0.4
524
Normal
-0.4
938
Normal
-0.4
352
Normal
-0.4
642
Normal
-0.4
968
Normal
-0.4
636
Normal
-0.4
494
Normal
-0.4
964
Normal
-0.4
922
Normal
-0.4
474
Normal
-0.4
858
Normal
-0.4
286
Normal
-0.4
937
Tumor
-0.4
918
Normal
-0.4
1028
Normal
-0.4
976
Normal
-0.4
492
Normal
-0.4
926
Normal
-0.4
1026
Normal
-0.4
716
Normal
-0.4
618
Normal
-0.5
816
Normal
-0.5
742
Normal
-0.5
686
Normal
-0.5
916
Normal
-0.5
982
Normal
-0.5
981
Tumor
-0.5
728
Normal
-0.5
572
Normal
-0.5
815
Tumor
-0.5
744
Normal
-0.5
1022
Normal
-0.5
212
Normal
-0.5
448
Normal
-0.5
1046
Normal
-0.5
723
Tumor
-0.5
738
Normal
-0.5
714
Normal
-0.5
228
Normal
-0.5
284
Normal
-0.5
546
Normal
-0.5
882
Normal
-0.5
536
Normal
-0.5
628
Normal
-0.5
818
Normal
-0.5
824
Normal
-0.5
484
Normal
-0.5
1044
Normal
-0.6
852
Normal
-0.6
924
Normal
-0.6
1032
Normal
-0.6
698
Normal
-0.6
958
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
