HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:43.9 nTPM
HPA Brain:80.5 nTPM
GTEx:43.9 nTPM
FANTOM5:79.9 Scaled Tags Per Million
Pig:49.6 nTPM
Mouse:56.5 nTPM
Allen mouse:11.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA070478
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 80.5
Sample id Sample description nTPM
Hippocampus
nTPM: 53.1
1898 Male, age 80, left hemisphere 70.8
2621 Female, age 67, right hemisphere 57.4
2148 Female, age 91, left hemisphere 54.2
1855 Male, age 76, left hemisphere 50.0
1911 Female, age 85, right hemisphere 44.8
2529 Female, age 94, left hemisphere 41.5
Dentate gyrus
nTPM: 59.5
2531 Female, age 67, both hemispheres 78.9
2530 Female, age 94, left hemisphere 72.4
2010 Male, age 76, both hemispheres 55.8
2246 Female, age 85, both hemispheres 52.8
1927 Female, age 91, both hemispheres 49.2
2528 Male, age 74, both hemispheres 48.3
Entorhinal gyrus
nTPM: 80.5
2764 Male, age 80, right hemisphere 100.0
2613 Female, age 94, left hemisphere 93.6
1787 Male, age 76, left hemisphere 84.1
2686 Male, age 75, right hemisphere 79.8
1938 Female, age 85, left hemisphere 78.2
2117 Female, age 91, right hemisphere 47.3
Hippocampus, CA1
nTPM: 55.7
2749 Male, age 80, left hemisphere 73.3
2045 Male, age 76, both hemispheres 69.1
1873 Female, age 85, both hemispheres 56.7
2527 Male, age 74, both hemispheres 41.7
2082 Female, age 91, right hemisphere 37.8
Hippocampus, CA2
nTPM: 52.5
1892 Male, age 76, both hemispheres 70.0
1963 Male, age 80, left hemisphere 62.0
2437 Female, age 94, left hemisphere 60.2
1940 Female, age 85, left hemisphere 47.3
2249 Male, age 74, both hemispheres 38.1
2113 Female, age 91, right hemisphere 37.4
Hippocampus, CA3
nTPM: 61.3
2620 Female, age 94, left hemisphere 93.0
2861 Female, age 67, both hemispheres 68.5
2137 Male, age 80, left hemisphere 65.8
1867 Male, age 76, both hemispheres 54.9
1891 Female, age 85, both hemispheres 54.5
2436 Male, age 74, both hemispheres 31.3
Parahippocampal cortex
nTPM: 65.3
1850 Male, age 80, both hemispheres 79.8
2532 Female, age 72, left hemisphere 76.1
1933 Female, age 85, both hemispheres 73.4
2622 Female, age 67, right hemisphere 73.0
1990 Female, age 91, right hemisphere 63.9
2693 Female, age 94, both hemispheres 63.8
2245 Female, age 91, both hemispheres 61.9
2692 Male, age 74, both hemispheres 57.7
2018 Male, age 76, both hemispheres 53.7
2250 Female, age 67, right hemisphere 49.3
Perirhinal gyrus
nTPM: 75.4
1794 Male, age 80, right hemisphere 86.0
2848 Male, age 76, right hemisphere 83.1
2521 Female, age 94, right hemisphere 70.2
1847 Female, age 91, left hemisphere 69.1
1841 Female, age 85, right hemisphere 68.4
Subiculum
nTPM: 55.0
1977 Female, age 85, both hemispheres 72.9
1901 Male, age 80, both hemispheres 62.5
2438 Female, age 94, left hemisphere 50.4
2042 Male, age 76, both hemispheres 49.7
2619 Male, age 74, both hemispheres 49.5
2729 Female, age 91, right hemisphere 45.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 43.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.9
Samples: 197

Max nTPM: 164.1
Min nTPM: 5.4
Std nTPM: 18.2
Median nTPM: 40.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 164.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 125.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 100.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 91.7
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 84.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 78.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 76.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 75.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 72.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 72.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 71.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 79.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 79.9
FF:10169-103B7 60 years, female 90.3
FF:10153-102I9 76 years, female 69.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 49.6
Pig sample Sample description nTPM
Subiculum
nTPM: 32.2
Samples: 4

Max nTPM: 39.9
Min nTPM: 24.4
Sample A Female 39.9
Sample B Female 27.9
Sample C Male 36.7
Sample D Male 24.4
Dorsal hippocampus
nTPM: 23.6
Samples: 4

Max nTPM: 25.0
Min nTPM: 21.8
Sample A Female 21.8
Sample B Female 24.1
Sample C Male 25.0
Sample D Male 23.4
Entorhinal cortex
nTPM: 49.6
Samples: 4

Max nTPM: 54.0
Min nTPM: 43.6
Sample A Female 54.0
Sample B Female 43.6
Sample C Male 50.5
Sample D Male 50.4
Ventral hippocampus
nTPM: 25.5
Samples: 4

Max nTPM: 29.0
Min nTPM: 19.8
Sample A Female 19.8
Sample B Female 25.5
Sample C Male 29.0
Sample D Male 27.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 56.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 56.5
Samples: 4

Max nTPM: 68.7
Min nTPM: 46.3
Sample A Male 62.9
Sample B Male 68.7
Sample C Female 46.3
Sample D Female 48.0
Hippocampal formation
nTPM: 26.7
Samples: 4

Max nTPM: 31.0
Min nTPM: 18.5
Sample A Male 31.0
Sample B Male 28.3
Sample C Female 18.5
Sample D Female 28.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 11.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.5
72119580 Antisense, RP_051017_04_A03, Mouse strain C57BL/6J (56 days, male) 15.4
69201558 Antisense, RP_050317_03_B07, Mouse strain C57BL/6J (56 days, male) 13.4
73512202 Antisense, RP_050713_01_E08, Mouse strain C57BL/6J (56 days, male) 5.6
70919537 Antisense, RP_050713_01_E08, Mouse strain C57BL/6J (56 days, male) 5.1

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