We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARPC5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
277.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
255.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
254.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
212.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
198.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
190.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
190.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
186.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
172.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
166.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
162.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
160.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
154.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
153.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
147.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
144.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
142.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
140.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
138.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
137.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
136.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
136.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
134.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
133.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
132.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
125.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
124.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
124.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
122.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
119.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
117.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
114.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
113.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
112.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
110.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
108.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
107.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
106.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
105.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
104.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
104.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
104.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
104.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
103.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
99.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
99.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
99.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
99.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
99.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
97.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
95.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
95.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
95.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
94.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
94.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
93.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
93.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
93.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
92.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
91.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
90.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
90.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
90.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
89.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
88.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
88.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
87.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
86.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
86.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
85.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
85.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
84.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
83.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
82.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
82.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
82.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
82.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
82.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
82.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
81.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
81.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
80.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
80.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
80.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
80.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
79.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
79.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
78.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
78.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
78.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
78.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
78.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
77.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
77.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
76.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
72.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
72.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
71.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
71.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
70.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
70.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
70.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
69.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
69.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
69.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
68.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
67.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
67.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
67.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
66.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
66.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
66.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
66.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
66.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
65.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
65.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
65.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
64.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
64.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
63.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
63.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
63.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
63.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
63.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
63.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
63.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
62.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
62.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
62.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
62.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
61.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
61.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
61.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
61.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
61.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
60.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
60.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
60.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
60.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
60.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
60.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
60.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
59.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
59.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
58.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
58.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
58.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
58.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
58.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
57.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
57.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
57.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
57.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
56.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
56.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
56.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
56.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
56.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
55.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
55.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
54.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
54.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
54.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
54.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
54.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
53.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
53.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
53.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
53.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
52.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
52.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
52.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
52.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
51.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
51.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
51.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
51.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
51.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
51.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
50.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
50.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
50.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
50.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
50.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
50.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
49.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
49.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
49.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
49.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
49.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
47.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
47.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
47.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
46.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
46.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
45.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
45.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
45.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
45.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
45.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
45.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
44.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
44.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
44.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
44.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
43.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
43.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
43.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
42.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
42.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
42.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
41.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
41.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
41.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
41.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
41.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
40.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
40.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
40.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
40.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
40.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
40.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
39.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
39.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
39.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
38.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
37.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
37.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
37.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
37.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
37.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
37.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
37.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
37.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
36.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
35.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
35.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
34.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
34.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
34.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
34.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
33.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
33.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
33.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
33.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
32.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
32.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
31.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
31.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
31.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
31.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
31.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
30.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
30.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
30.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
30.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
30.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
29.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
29.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
29.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
29.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
27.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
27.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
27.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
26.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
26.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
26.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
25.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
25.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
25.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
24.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
23.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
23.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
22.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
22.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
20.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
18.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARPC5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
93.7
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
390.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
376.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
339.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
258.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
212.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
207.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
204.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
203.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
185.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
183.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
182.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
181.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
175.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
174.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
174.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
174.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
173.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
173.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
168.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
164.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
160.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
145.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
145.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
142.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
142.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
141.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
141.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
140.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
140.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
139.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
138.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
137.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
136.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
135.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
134.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
132.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
131.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
130.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
130.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
129.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
128.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
128.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
127.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
124.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
124.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
124.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
120.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
120.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
119.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
119.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
118.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
118.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
116.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
116.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
116.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
115.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
115.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
115.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
114.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
114.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
113.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
112.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
112.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
111.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
110.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
109.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
109.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
108.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
108.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
108.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
107.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
105.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
105.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
104.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
103.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
103.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
103.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
101.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
100.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
99.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
99.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
99.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
98.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
97.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
96.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
96.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
95.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
94.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
93.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
93.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
92.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
92.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
92.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
92.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
92.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
91.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
90.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
90.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
89.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
89.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
89.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
89.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
88.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
88.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
88.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
88.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
87.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
87.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
87.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
86.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
84.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
84.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
83.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
83.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
83.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
83.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
82.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
82.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
82.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
82.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
81.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
81.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
81.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
81.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
81.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
80.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
80.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
80.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
80.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
79.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
79.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
78.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
77.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
77.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
76.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
75.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
75.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
75.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
74.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
73.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
73.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
73.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
72.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
72.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
72.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
71.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
71.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
71.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
71.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
70.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
70.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
69.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
68.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
68.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
68.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
68.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
68.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
68.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
68.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
67.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
66.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
65.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
65.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
65.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
64.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
63.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
62.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
62.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
61.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
60.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
60.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
58.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
58.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
57.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
57.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
56.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
56.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
54.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
54.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
54.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
54.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
53.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
53.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
52.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
52.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
52.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
52.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
52.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
52.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
52.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
51.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
51.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
51.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
51.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
49.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
49.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
49.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
49.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
49.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
48.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
48.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
48.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
48.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
48.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
47.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
47.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
47.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
47.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
46.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
45.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
44.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
44.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
42.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
41.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
41.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
40.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
39.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
38.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
38.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
37.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
36.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
33.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
33.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
32.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
31.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
27.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
25.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
917
Tumor
0.9
211
Tumor
0.7
311
Tumor
0.7
724
Normal
0.6
863
Tumor
0.6
131
Tumor
0.5
455
Tumor
0.5
425
Tumor
0.5
943
Tumor
0.5
975
Tumor
0.5
492
Normal
0.4
283
Tumor
0.4
478
Normal
0.4
814
Normal
0.4
661
Tumor
0.4
524
Normal
0.4
536
Normal
0.4
434
Normal
0.4
881
Tumor
0.4
444
Normal
0.4
563
Tumor
0.4
185
Tumor
0.4
498
Normal
0.3
963
Tumor
0.3
421
Tumor
0.3
384
Normal
0.3
743
Tumor
0.3
213
Tumor
0.3
966
Normal
0.3
415
Tumor
0.3
954
Normal
0.3
491
Tumor
0.3
297
Tumor
0.3
916
Normal
0.3
188
Normal
0.3
224
Normal
0.3
471
Tumor
0.3
461
Tumor
0.3
867
Tumor
0.3
223
Tumor
0.3
737
Tumor
0.3
268
Normal
0.3
271
Tumor
0.3
1031
Tumor
0.3
852
Normal
0.3
978
Normal
0.3
447
Tumor
0.3
778
Normal
0.2
343
Tumor
0.2
192
Normal
0.2
146
Normal
0.2
823
Tumor
0.2
135
Tumor
0.2
1043
Tumor
0.2
126
Normal
0.2
813
Tumor
0.2
375
Tumor
0.2
976
Normal
0.2
284
Normal
0.2
262
Normal
0.2
212
Normal
0.2
528
Normal
0.2
515
Tumor
0.2
217
Tumor
0.2
641
Tumor
0.2
514
Normal
0.2
195
Tumor
0.2
861
Tumor
0.2
662
Normal
0.2
137
Tumor
0.2
362
Normal
0.2
925
Tumor
0.2
493
Tumor
0.2
516
Normal
0.2
713
Tumor
0.2
628
Normal
0.1
1044
Normal
0.1
518
Normal
0.1
525
Tumor
0.1
728
Normal
0.1
864
Normal
0.1
913
Tumor
0.1
984
Normal
0.1
1045
Tumor
0.1
517
Tumor
0.1
874
Normal
0.1
574
Normal
0.1
191
Tumor
0.1
558
Normal
0.1
363
Tumor
0.1
884
Normal
0.1
883
Tumor
0.1
617
Tumor
0.1
145
Tumor
0.1
738
Normal
0.1
494
Normal
0.1
538
Normal
0.1
686
Normal
0.1
816
Normal
0.1
467
Tumor
0.1
187
Tumor
0.1
952
Normal
0.1
817
Tumor
0.1
364
Normal
0.1
857
Tumor
0.1
443
Tumor
0.1
851
Tumor
0.1
383
Tumor
0.1
312
Normal
0.1
142
Normal
0.1
721
Tumor
0.1
756
Normal
0.1
1015
Tumor
0.1
138
Normal
0.1
1042
Normal
0.1
141
Tumor
0.1
432
Normal
0.1
868
Normal
0.1
744
Normal
0.1
824
Normal
0.1
328
Normal
0.1
866
Normal
0.1
386
Normal
0.1
445
Tumor
0.1
672
Normal
0.1
715
Tumor
0.1
147
Tumor
0.1
272
Normal
0.1
526
Normal
0.1
914
Normal
0.1
977
Tumor
0.0
968
Normal
0.0
433
Tumor
0.0
535
Tumor
0.0
878
Normal
0.0
124
Normal
0.0
278
Normal
0.0
483
Tumor
0.0
481
Tumor
0.0
474
Normal
0.0
664
Normal
0.0
921
Tumor
0.0
462
Normal
0.0
385
Tumor
0.0
527
Tumor
0.0
352
Normal
0.0
666
Normal
0.0
924
Normal
0.0
918
Normal
0.0
685
Tumor
0.0
344
Normal
0.0
786
Normal
0.0
482
Normal
0.0
877
Tumor
0.0
125
Tumor
0.0
228
Normal
0.0
955
Tumor
0.0
958
Normal
0.0
1028
Normal
0.0
882
Normal
0.0
365
Tumor
0.0
696
Normal
0.0
463
Tumor
0.0
716
Normal
0.0
416
Normal
0.0
424
Normal
0.0
332
Normal
0.0
722
Normal
0.0
723
Tumor
0.0
488
Normal
0.0
412
Normal
0.0
742
Normal
0.0
858
Normal
0.0
356
Normal
0.0
912
Normal
0.0
922
Normal
0.0
818
Normal
0.0
755
Tumor
0.0
221
Tumor
0.0
472
Normal
0.0
873
Tumor
0.0
714
Normal
0.0
956
Normal
0.0
564
Normal
0.0
671
Tumor
0.0
745
Tumor
0.0
698
Normal
-0.1
427
Tumor
-0.1
392
Normal
-0.1
136
Normal
-0.1
298
Normal
-0.1
368
Normal
-0.1
451
Tumor
-0.1
648
Normal
-0.1
456
Normal
-0.1
1026
Normal
-0.1
114
Normal
-0.1
227
Tumor
-0.1
944
Normal
-0.1
214
Normal
-0.1
354
Normal
-0.1
327
Tumor
-0.1
286
Normal
-0.1
1046
Normal
-0.1
627
Tumor
-0.1
422
Normal
-0.1
448
Normal
-0.1
1021
Tumor
-0.1
926
Normal
-0.1
436
Normal
-0.1
911
Tumor
-0.1
358
Normal
-0.1
862
Normal
-0.1
355
Tumor
-0.1
366
Normal
-0.1
396
Normal
-0.1
546
Normal
-0.1
572
Normal
-0.1
1016
Normal
-0.1
815
Tumor
-0.1
387
Tumor
-0.1
697
Tumor
-0.1
642
Normal
-0.1
534
Normal
-0.1
741
Tumor
-0.1
414
Normal
-0.1
545
Tumor
-0.1
468
Normal
-0.1
1025
Tumor
-0.1
567
Tumor
-0.1
394
Normal
-0.1
218
Normal
-0.1
915
Tumor
-0.1
1014
Normal
-0.1
982
Normal
-0.1
923
Tumor
-0.1
573
Tumor
-0.1
951
Tumor
-0.1
314
Normal
-0.1
554
Normal
-0.1
477
Tumor
-0.1
171
Tumor
-0.1
938
Normal
-0.2
435
Tumor
-0.2
428
Normal
-0.2
785
Tumor
-0.2
615
Tumor
-0.2
162
Normal
-0.2
111
Normal
-0.2
431
Tumor
-0.2
172
Normal
-0.2
746
Normal
-0.2
257
Tumor
-0.2
232
Normal
-0.2
277
Tumor
-0.2
636
Normal
-0.2
983
Tumor
-0.2
553
Tumor
-0.2
258
Normal
-0.2
331
Tumor
-0.2
388
Normal
-0.2
1022
Normal
-0.2
446
Normal
-0.2
395
Tumor
-0.2
964
Normal
-0.2
357
Tumor
-0.2
1032
Normal
-0.2
261
Tumor
-0.2
342
Normal
-0.2
957
Tumor
-0.2
616
Normal
-0.2
464
Normal
-0.2
484
Normal
-0.2
497
Tumor
-0.2
953
Tumor
-0.2
413
Tumor
-0.2
557
Tumor
-0.2
452
Normal
-0.2
148
Normal
-0.2
231
Tumor
-0.2
128
Normal
-0.2
127
Tumor
-0.2
196
Normal
-0.2
186
Normal
-0.2
132
Normal
-0.3
361
Tumor
-0.3
618
Normal
-0.3
426
Normal
-0.3
285
Tumor
-0.3
423
Tumor
-0.3
665
Tumor
-0.3
466
Normal
-0.3
353
Tumor
-0.3
568
Normal
-0.3
112
Tumor
-0.3
473
Tumor
-0.3
113
Tumor
-0.3
523
Tumor
-0.3
367
Tumor
-0.3
571
Tumor
-0.3
341
Tumor
-0.3
727
Tumor
-0.3
663
Tumor
-0.3
351
Tumor
-0.3
647
Tumor
-0.3
376
Normal
-0.3
513
Tumor
-0.3
777
Tumor
-0.3
391
Tumor
-0.4
222
Normal
-0.4
635
Tumor
-0.4
487
Tumor
-0.4
161
Tumor
-0.4
865
Tumor
-0.4
313
Tumor
-0.4
1013
Tumor
-0.4
967
Tumor
-0.4
937
Tumor
-0.5
1041
Tumor
-0.5
1027
Tumor
-0.5
267
Tumor
-0.5
965
Tumor
-0.5
411
Tumor
-0.5
533
Tumor
-0.5
537
Tumor
-0.5
123
Tumor
-0.5
981
Tumor
-0.6
465
Tumor
-0.6
695
Tumor
-0.7
393
Tumor
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
