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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VCAM1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
143.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
125.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
122.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
112.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
106.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
103.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
96.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
90.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
86.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
78.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
78.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
76.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
72.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
70.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
67.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
66.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
60.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
59.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
56.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
55.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
54.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
51.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
51.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
48.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
47.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
46.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
41.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
40.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
39.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
37.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
35.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
35.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
33.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
33.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
32.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
32.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
31.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
30.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
28.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
26.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
26.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
24.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
23.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VCAM1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.3
Number of samples
231
Samples
Sample
Description
TPM
DO45247
0 years, female, NA, stage:2, alive, 210 days
161.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
154.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
143.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
136.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
130.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
98.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
79.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
71.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
67.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
62.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
59.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
59.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
57.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
56.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
56.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
55.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
55.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
54.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
53.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
53.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
50.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
48.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
48.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
47.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
46.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
44.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
44.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
44.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
43.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
43.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
42.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
42.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
42.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
42.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
41.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
40.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
38.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
38.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
38.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
36.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
35.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
35.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
34.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
32.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
31.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
31.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
31.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
29.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
29.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
29.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
28.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
28.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
27.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
22.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
363
Tumor
2.9
517
Tumor
2.6
211
Tumor
2.0
341
Tumor
1.9
715
Tumor
1.9
1025
Tumor
1.8
463
Tumor
1.8
413
Tumor
1.8
411
Tumor
1.5
227
Tumor
1.5
1031
Tumor
1.4
285
Tumor
1.4
127
Tumor
1.3
963
Tumor
1.3
393
Tumor
1.2
923
Tumor
1.1
533
Tumor
1.1
943
Tumor
1.1
967
Tumor
1.1
267
Tumor
1.1
647
Tumor
1.0
937
Tumor
1.0
483
Tumor
1.0
471
Tumor
0.9
224
Normal
0.9
641
Tumor
0.8
192
Normal
0.7
498
Normal
0.7
983
Tumor
0.7
524
Normal
0.7
536
Normal
0.7
965
Tumor
0.6
478
Normal
0.6
185
Tumor
0.6
713
Tumor
0.6
443
Tumor
0.6
925
Tumor
0.6
538
Normal
0.5
367
Tumor
0.5
921
Tumor
0.5
952
Normal
0.5
492
Normal
0.5
635
Tumor
0.5
571
Tumor
0.5
617
Tumor
0.5
113
Tumor
0.4
954
Normal
0.4
545
Tumor
0.4
387
Tumor
0.4
467
Tumor
0.4
881
Tumor
0.4
721
Tumor
0.4
223
Tumor
0.4
535
Tumor
0.4
815
Tumor
0.4
877
Tumor
0.4
958
Normal
0.4
976
Normal
0.4
124
Normal
0.3
497
Tumor
0.3
672
Normal
0.3
778
Normal
0.3
878
Normal
0.3
968
Normal
0.3
1044
Normal
0.3
146
Normal
0.3
352
Normal
0.3
444
Normal
0.3
311
Tumor
0.3
984
Normal
0.3
852
Normal
0.3
914
Normal
0.3
138
Normal
0.2
917
Tumor
0.2
384
Normal
0.2
823
Tumor
0.2
573
Tumor
0.2
874
Normal
0.2
412
Normal
0.2
284
Normal
0.2
883
Tumor
0.2
123
Tumor
0.2
716
Normal
0.2
364
Normal
0.2
368
Normal
0.2
1014
Normal
0.2
966
Normal
0.2
686
Normal
0.2
111
Normal
0.1
286
Normal
0.1
745
Tumor
0.1
978
Normal
0.1
516
Normal
0.1
262
Normal
0.1
744
Normal
0.1
114
Normal
0.1
474
Normal
0.1
344
Normal
0.1
188
Normal
0.1
126
Normal
0.1
434
Normal
0.1
1028
Normal
0.1
528
Normal
0.1
415
Tumor
0.1
217
Tumor
0.1
916
Normal
0.1
956
Normal
0.1
361
Tumor
0.1
212
Normal
0.0
386
Normal
0.0
468
Normal
0.0
1032
Normal
0.0
814
Normal
0.0
272
Normal
0.0
926
Normal
0.0
494
Normal
0.0
738
Normal
0.0
214
Normal
0.0
816
Normal
0.0
518
Normal
0.0
1042
Normal
0.0
355
Tumor
0.0
261
Tumor
0.0
356
Normal
0.0
268
Normal
0.0
394
Normal
0.0
228
Normal
0.0
546
Normal
0.0
964
Normal
0.0
864
Normal
0.0
938
Normal
0.0
142
Normal
0.0
563
Tumor
0.0
472
Normal
0.0
277
Tumor
0.0
136
Normal
0.0
728
Normal
0.0
391
Tumor
-0.1
462
Normal
-0.1
722
Normal
-0.1
661
Tumor
-0.1
488
Normal
-0.1
312
Normal
-0.1
482
Normal
-0.1
481
Tumor
-0.1
724
Normal
-0.1
695
Tumor
-0.1
514
Normal
-0.1
366
Normal
-0.1
662
Normal
-0.1
714
Normal
-0.1
112
Tumor
-0.1
944
Normal
-0.1
232
Normal
-0.1
186
Normal
-0.1
392
Normal
-0.1
187
Tumor
-0.1
416
Normal
-0.1
1026
Normal
-0.1
756
Normal
-0.1
628
Normal
-0.1
696
Normal
-0.1
1043
Tumor
-0.1
376
Normal
-0.1
447
Tumor
-0.1
493
Tumor
-0.1
862
Normal
-0.1
857
Tumor
-0.1
924
Normal
-0.1
858
Normal
-0.1
448
Normal
-0.1
824
Normal
-0.1
912
Normal
-0.1
861
Tumor
-0.1
975
Tumor
-0.1
432
Normal
-0.2
918
Normal
-0.2
328
Normal
-0.2
526
Normal
-0.2
553
Tumor
-0.2
213
Tumor
-0.2
554
Normal
-0.2
375
Tumor
-0.2
424
Normal
-0.2
955
Tumor
-0.2
484
Normal
-0.2
558
Normal
-0.2
258
Normal
-0.2
873
Tumor
-0.2
195
Tumor
-0.2
786
Normal
-0.2
818
Normal
-0.2
537
Tumor
-0.2
868
Normal
-0.2
358
Normal
-0.2
882
Normal
-0.2
162
Normal
-0.2
354
Normal
-0.2
491
Tumor
-0.2
148
Normal
-0.2
866
Normal
-0.2
362
Normal
-0.2
396
Normal
-0.3
456
Normal
-0.3
283
Tumor
-0.3
1046
Normal
-0.3
473
Tumor
-0.3
737
Tumor
-0.3
218
Normal
-0.3
723
Tumor
-0.3
982
Normal
-0.3
742
Normal
-0.3
172
Normal
-0.3
698
Normal
-0.3
132
Normal
-0.3
574
Normal
-0.3
666
Normal
-0.3
278
Normal
-0.3
913
Tumor
-0.3
884
Normal
-0.3
1045
Tumor
-0.3
461
Tumor
-0.3
616
Normal
-0.3
534
Normal
-0.3
423
Tumor
-0.3
196
Normal
-0.3
813
Tumor
-0.4
525
Tumor
-0.4
1022
Normal
-0.4
572
Normal
-0.4
922
Normal
-0.4
466
Normal
-0.4
191
Tumor
-0.4
141
Tumor
-0.4
422
Normal
-0.4
785
Tumor
-0.4
342
Normal
-0.4
435
Tumor
-0.4
332
Normal
-0.4
383
Tumor
-0.4
1013
Tumor
-0.4
867
Tumor
-0.4
727
Tumor
-0.4
636
Normal
-0.4
145
Tumor
-0.4
388
Normal
-0.4
1016
Normal
-0.5
365
Tumor
-0.5
298
Normal
-0.5
664
Normal
-0.5
137
Tumor
-0.5
331
Tumor
-0.5
271
Tumor
-0.5
697
Tumor
-0.5
128
Normal
-0.5
436
Normal
-0.5
446
Normal
-0.5
314
Normal
-0.5
455
Tumor
-0.5
426
Normal
-0.5
414
Normal
-0.5
353
Tumor
-0.5
327
Tumor
-0.6
428
Normal
-0.6
817
Tumor
-0.6
851
Tumor
-0.6
642
Normal
-0.6
915
Tumor
-0.6
297
Tumor
-0.6
131
Tumor
-0.6
343
Tumor
-0.6
568
Normal
-0.6
746
Normal
-0.6
464
Normal
-0.6
564
Normal
-0.6
618
Normal
-0.7
648
Normal
-0.7
665
Tumor
-0.7
1015
Tumor
-0.7
421
Tumor
-0.7
222
Normal
-0.7
863
Tumor
-0.7
627
Tumor
-0.7
452
Normal
-0.7
671
Tumor
-0.7
515
Tumor
-0.7
161
Tumor
-0.8
615
Tumor
-0.8
433
Tumor
-0.8
755
Tumor
-0.9
385
Tumor
-0.9
487
Tumor
-0.9
425
Tumor
-0.9
477
Tumor
-0.9
957
Tumor
-1.0
221
Tumor
-1.0
125
Tumor
-1.0
977
Tumor
-1.0
431
Tumor
-1.0
513
Tumor
-1.0
147
Tumor
-1.1
953
Tumor
-1.1
685
Tumor
-1.1
451
Tumor
-1.1
1027
Tumor
-1.1
135
Tumor
-1.2
1041
Tumor
-1.2
557
Tumor
-1.2
777
Tumor
-1.2
171
Tumor
-1.2
527
Tumor
-1.3
231
Tumor
-1.3
427
Tumor
-1.3
313
Tumor
-1.3
257
Tumor
-1.3
465
Tumor
-1.4
951
Tumor
-1.4
395
Tumor
-1.4
981
Tumor
-1.4
741
Tumor
-1.4
911
Tumor
-1.5
567
Tumor
-1.6
865
Tumor
-1.6
663
Tumor
-1.6
523
Tumor
-1.7
1021
Tumor
-1.7
357
Tumor
-1.7
445
Tumor
-1.8
351
Tumor
-2.0
743
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
