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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LRP5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
54.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
457.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
400.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
319.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
250.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
151.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
141.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
120.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
113.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
110.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
109.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
105.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
105.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
104.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
103.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
102.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
102.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
101.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
100.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
99.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
99.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
96.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
96.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
92.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
90.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
89.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
87.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
86.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
85.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
84.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
82.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
81.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
81.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
80.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
80.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
80.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
80.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
79.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
78.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
78.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
78.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
77.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
77.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
77.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
77.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
76.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
75.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
74.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
74.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
74.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
73.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
73.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
73.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
73.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
73.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
72.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
72.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
72.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
71.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
71.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
70.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
70.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
70.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
69.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
69.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
69.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
69.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
67.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
67.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
67.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
67.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
67.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
67.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
66.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
66.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
66.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
66.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
66.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
66.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
66.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
66.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
65.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
65.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
64.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
64.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
64.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
64.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
63.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
63.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
63.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
63.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
63.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
63.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
62.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
62.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
61.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
61.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
61.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
61.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
60.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
60.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
60.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
60.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
60.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
59.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
59.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
59.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
59.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
59.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
59.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
59.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
59.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
59.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
58.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
58.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
58.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
58.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
58.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
58.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
58.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
57.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
57.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
57.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
57.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
57.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
57.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
57.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
57.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
57.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
56.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
56.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
56.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
56.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
56.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
55.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
55.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
55.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
55.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
55.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
55.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
55.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
54.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
54.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
54.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
54.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
54.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
54.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
54.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
54.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
53.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
53.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
53.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
53.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
53.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
53.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
53.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
52.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
52.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
52.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
52.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
52.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
52.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
52.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
52.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
52.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
52.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
51.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
51.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
51.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
51.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
51.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
50.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
50.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
50.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
50.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
50.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
50.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
50.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
49.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
49.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
49.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
49.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
49.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
49.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
49.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
49.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
48.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
48.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
48.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
48.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
48.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
48.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
47.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
47.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
47.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
46.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
46.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
46.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
46.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
45.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
45.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
45.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
45.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
45.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
45.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
45.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
44.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
44.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
44.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
44.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
44.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
44.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
44.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
43.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
43.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
43.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
43.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
43.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
43.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
43.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
43.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
43.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
43.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
43.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
43.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
42.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
42.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
42.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
42.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
42.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
42.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
42.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
42.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
42.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
42.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
42.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
41.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
41.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
41.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
41.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
41.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
41.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
41.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
41.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
41.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
40.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
40.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
40.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
40.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
40.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
40.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
39.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
39.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
39.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
39.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
39.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
39.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
38.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
38.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
38.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
38.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
38.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
38.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
38.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
38.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
37.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
37.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
37.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
37.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
37.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
37.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
37.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
37.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
36.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
36.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
36.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
36.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
36.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
36.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
36.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
35.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
35.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
34.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
34.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
34.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
34.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
34.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
34.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
34.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
33.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
32.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
32.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
31.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
31.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
31.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
31.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
30.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
30.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
30.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
30.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
29.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
29.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
28.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
28.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
27.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
26.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
26.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
26.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
24.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
24.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
23.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
23.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
22.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
22.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
21.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
20.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LRP5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.2
Number of samples
231
Samples
Sample
Description
TPM
DO45191
0 years, female, NA, stage:2, alive, 1200 days
515.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
81.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
73.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
67.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
63.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
55.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
53.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
49.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
47.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
44.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
44.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
44.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
43.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
42.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
41.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
41.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
40.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
40.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
40.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
39.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
39.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
39.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
37.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
37.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
37.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
37.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
35.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
35.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
35.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
35.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
35.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
34.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
34.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
33.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
33.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
33.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
33.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
31.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
30.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
30.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
29.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
29.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
29.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
29.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
28.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
28.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
28.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
28.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
28.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
27.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
27.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
27.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
27.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
26.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
26.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
25.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
24.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
24.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
23.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
22.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
112
Tumor
2.0
431
Tumor
1.8
863
Tumor
1.0
873
Tumor
1.0
743
Tumor
0.9
473
Tumor
0.8
912
Normal
0.8
517
Tumor
0.7
615
Tumor
0.6
131
Tumor
0.6
813
Tumor
0.5
343
Tumor
0.5
884
Normal
0.5
285
Tumor
0.5
616
Normal
0.4
737
Tumor
0.4
814
Normal
0.4
536
Normal
0.4
627
Tumor
0.4
227
Tumor
0.4
727
Tumor
0.4
1046
Normal
0.4
671
Tumor
0.4
1044
Normal
0.3
618
Normal
0.3
297
Tumor
0.3
481
Tumor
0.3
428
Normal
0.3
642
Normal
0.3
636
Normal
0.3
425
Tumor
0.3
628
Normal
0.3
665
Tumor
0.3
865
Tumor
0.3
188
Normal
0.3
414
Normal
0.3
515
Tumor
0.3
926
Normal
0.2
523
Tumor
0.2
452
Normal
0.2
713
Tumor
0.2
647
Tumor
0.2
738
Normal
0.2
882
Normal
0.2
744
Normal
0.2
445
Tumor
0.2
641
Tumor
0.2
192
Normal
0.2
922
Normal
0.2
448
Normal
0.2
977
Tumor
0.2
135
Tumor
0.2
286
Normal
0.2
258
Normal
0.2
918
Normal
0.2
432
Normal
0.2
363
Tumor
0.2
186
Normal
0.2
424
Normal
0.2
446
Normal
0.2
698
Normal
0.2
514
Normal
0.2
558
Normal
0.1
877
Tumor
0.1
456
Normal
0.1
937
Tumor
0.1
777
Tumor
0.1
1045
Tumor
0.1
756
Normal
0.1
527
Tumor
0.1
147
Tumor
0.1
661
Tumor
0.1
196
Normal
0.1
545
Tumor
0.1
915
Tumor
0.1
368
Normal
0.1
714
Normal
0.1
924
Normal
0.1
914
Normal
0.1
214
Normal
0.1
272
Normal
0.1
617
Tumor
0.1
284
Normal
0.1
187
Tumor
0.1
217
Tumor
0.1
361
Tumor
0.1
132
Normal
0.1
916
Normal
0.1
462
Normal
0.1
434
Normal
0.1
568
Normal
0.1
228
Normal
0.1
426
Normal
0.1
982
Normal
0.1
526
Normal
0.1
224
Normal
0.1
222
Normal
0.1
672
Normal
0.1
331
Tumor
0.1
742
Normal
0.1
142
Normal
0.1
1043
Tumor
0.1
124
Normal
0.1
127
Tumor
0.1
356
Normal
0.0
913
Tumor
0.0
1014
Normal
0.0
944
Normal
0.0
114
Normal
0.0
524
Normal
0.0
128
Normal
0.0
468
Normal
0.0
728
Normal
0.0
136
Normal
0.0
564
Normal
0.0
1016
Normal
0.0
981
Tumor
0.0
482
Normal
0.0
478
Normal
0.0
171
Tumor
0.0
421
Tumor
0.0
464
Normal
0.0
447
Tumor
0.0
376
Normal
0.0
387
Tumor
0.0
978
Normal
0.0
413
Tumor
0.0
513
Tumor
0.0
443
Tumor
0.0
146
Normal
0.0
212
Normal
0.0
723
Tumor
0.0
938
Normal
0.0
786
Normal
0.0
858
Normal
0.0
148
Normal
0.0
218
Normal
0.0
741
Tumor
0.0
422
Normal
0.0
466
Normal
0.0
572
Normal
0.0
1022
Normal
0.0
1026
Normal
0.0
715
Tumor
0.0
696
Normal
0.0
172
Normal
0.0
366
Normal
0.0
126
Normal
0.0
716
Normal
0.0
138
Normal
0.0
384
Normal
0.0
663
Tumor
0.0
976
Normal
0.0
686
Normal
0.0
563
Tumor
0.0
868
Normal
0.0
574
Normal
0.0
232
Normal
0.0
352
Normal
0.0
436
Normal
0.0
984
Normal
0.0
472
Normal
0.0
635
Tumor
0.0
463
Tumor
-0.1
867
Tumor
-0.1
423
Tumor
-0.1
365
Tumor
-0.1
492
Normal
-0.1
111
Normal
-0.1
964
Normal
-0.1
327
Tumor
-0.1
958
Normal
-0.1
1042
Normal
-0.1
145
Tumor
-0.1
968
Normal
-0.1
162
Normal
-0.1
923
Tumor
-0.1
1021
Tumor
-0.1
785
Tumor
-0.1
494
Normal
-0.1
257
Tumor
-0.1
943
Tumor
-0.1
878
Normal
-0.1
455
Tumor
-0.1
954
Normal
-0.1
314
Normal
-0.1
298
Normal
-0.1
498
Normal
-0.1
721
Tumor
-0.1
911
Tumor
-0.1
415
Tumor
-0.1
394
Normal
-0.1
1015
Tumor
-0.1
755
Tumor
-0.1
113
Tumor
-0.1
231
Tumor
-0.1
125
Tumor
-0.1
471
Tumor
-0.1
983
Tumor
-0.1
278
Normal
-0.1
358
Normal
-0.1
484
Normal
-0.1
666
Normal
-0.1
392
Normal
-0.1
461
Tumor
-0.1
435
Tumor
-0.1
534
Normal
-0.1
818
Normal
-0.1
161
Tumor
-0.1
488
Normal
-0.1
956
Normal
-0.1
553
Tumor
-0.1
221
Tumor
-0.1
573
Tumor
-0.1
925
Tumor
-0.1
354
Normal
-0.1
444
Normal
-0.1
185
Tumor
-0.1
917
Tumor
-0.1
516
Normal
-0.1
1032
Normal
-0.1
332
Normal
-0.1
864
Normal
-0.1
951
Tumor
-0.2
412
Normal
-0.2
195
Tumor
-0.2
518
Normal
-0.2
388
Normal
-0.2
1028
Normal
-0.2
362
Normal
-0.2
722
Normal
-0.2
367
Tumor
-0.2
866
Normal
-0.2
746
Normal
-0.2
778
Normal
-0.2
191
Tumor
-0.2
648
Normal
-0.2
546
Normal
-0.2
474
Normal
-0.2
861
Tumor
-0.2
874
Normal
-0.2
1027
Tumor
-0.2
921
Tumor
-0.2
491
Tumor
-0.2
268
Normal
-0.2
487
Tumor
-0.2
662
Normal
-0.2
952
Normal
-0.2
416
Normal
-0.2
137
Tumor
-0.2
262
Normal
-0.2
261
Tumor
-0.2
393
Tumor
-0.2
391
Tumor
-0.2
483
Tumor
-0.2
955
Tumor
-0.2
465
Tumor
-0.2
538
Normal
-0.2
427
Tumor
-0.2
386
Normal
-0.2
467
Tumor
-0.2
493
Tumor
-0.2
557
Tumor
-0.2
451
Tumor
-0.2
342
Normal
-0.2
664
Normal
-0.2
528
Normal
-0.2
862
Normal
-0.2
824
Normal
-0.2
312
Normal
-0.2
396
Normal
-0.3
364
Normal
-0.3
123
Tumor
-0.3
966
Normal
-0.3
344
Normal
-0.3
857
Tumor
-0.3
965
Tumor
-0.3
967
Tumor
-0.3
567
Tumor
-0.3
277
Tumor
-0.3
815
Tumor
-0.3
852
Normal
-0.3
817
Tumor
-0.3
963
Tumor
-0.3
883
Tumor
-0.3
223
Tumor
-0.3
477
Tumor
-0.3
385
Tumor
-0.3
328
Normal
-0.3
554
Normal
-0.3
697
Tumor
-0.4
823
Tumor
-0.4
535
Tumor
-0.4
745
Tumor
-0.4
695
Tumor
-0.4
411
Tumor
-0.4
433
Tumor
-0.4
267
Tumor
-0.4
311
Tumor
-0.4
881
Tumor
-0.4
571
Tumor
-0.4
213
Tumor
-0.4
1013
Tumor
-0.4
975
Tumor
-0.4
341
Tumor
-0.5
353
Tumor
-0.5
141
Tumor
-0.5
351
Tumor
-0.5
1041
Tumor
-0.5
685
Tumor
-0.5
395
Tumor
-0.5
533
Tumor
-0.5
497
Tumor
-0.5
816
Normal
-0.5
1031
Tumor
-0.5
271
Tumor
-0.5
357
Tumor
-0.6
851
Tumor
-0.6
283
Tumor
-0.7
383
Tumor
-0.7
313
Tumor
-0.7
1025
Tumor
-0.7
375
Tumor
-0.7
537
Tumor
-0.8
355
Tumor
-0.8
525
Tumor
-0.8
953
Tumor
-0.8
211
Tumor
-1.0
724
Normal
-1.0
957
Tumor
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
