MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:226.5 nTPM
HPA Brain:196.5 nTPM
GTEx:226.5 nTPM
FANTOM5:21.0 Scaled Tags Per Million
Pig:195.4 nTPM
Mouse:161.4 nTPM
Allen mouse:6.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 196.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 114.3
2219 Male, age 76, both hemispheres 213.9
1827 Male, age 72, unknown 133.7
2666 Male, age 74, left hemisphere 124.8
2828 Female, age 72, unknown 111.1
2411 Female, age 72, unknown 110.2
2019 Male, age 18, unknown 104.3
1833 Male, age 53, unknown 93.4
2586 Male, age 75, left hemisphere 91.5
1870 Female, age 42, unknown 84.3
1830 Male, age 51, unknown 76.1
Dorsal raphe nucleus
nTPM: 106.6
2298 Female, age 72, unknown 143.1
2750 Male, age 76, both hemispheres 122.4
2047 Male, age 72, unknown 120.2
1828 Male, age 53, unknown 90.5
2016 Female, age 72, unknown 56.9
Inferior colliculus
nTPM: 117.4
2097 Female, age 72, unknown 145.2
1890 Male, age 53, unknown 114.6
1848 Female, age 42, unknown 107.1
2849 Male, age 72, unknown 102.7
Median raphe nucleus
nTPM: 185.7
2220 Male, age 76, midline 185.7
Periaquaductal grey, anterior
nTPM: 141.0
2502 Female, age 75, unknown 149.2
1795 Male, age 51, unknown 143.2
1947 Male, age 18, unknown 130.5
Periaquaductal grey, dorsal
nTPM: 101.7
2850 Male, age 76, both hemispheres 119.7
1831 Male, age 72, unknown 104.6
1840 Male, age 53, unknown 100.5
2464 Female, age 72, unknown 81.8
Periaquaductal grey, lateral
nTPM: 80.7
2053 Male, age 18, unknown 95.4
2140 Male, age 76, both hemispheres 78.1
2272 Male, age 74, both hemispheres 68.5
Pretectal area
nTPM: 143.6
1816 Male, age 51, unknown 223.0
1817 Female, age 42, unknown 205.5
1944 Female, age 72, unknown 199.6
2667 Female, age 75, unknown 183.8
1815 Male, age 53, unknown 180.3
2007 Male, age 72, unknown 162.5
2224 Female, age 72, unknown 123.2
2825 Male, age 18, unknown 103.4
2316 Male, age 76, right hemisphere 69.3
2407 Male, age 75, both hemispheres 66.6
2273 Male, age 74, both hemispheres 62.8
Red nucleus
nTPM: 100.5
1821 Female, age 72, unknown 127.5
2725 Female, age 75, unknown 113.9
1954 Female, age 42, unknown 105.1
2785 Male, age 18, unknown 103.1
1904 Male, age 53, unknown 102.4
2584 Male, age 75, left hemisphere 102.4
2823 Male, age 76, right hemisphere 100.9
1865 Male, age 51, unknown 97.7
2588 Male, age 74, left hemisphere 93.5
2227 Male, age 72, unknown 87.9
2769 Male, age 72, unknown 86.2
2503 Female, age 72, unknown 85.0
Substantia nigra
nTPM: 196.5
1916 Female, age 42, unknown 324.5
2665 Male, age 74, both hemispheres 242.9
1851 Male, age 51, unknown 224.4
1941 Male, age 53, unknown 216.6
2241 Male, age 72, unknown 211.8
1889 Female, age 72, unknown 195.7
2409 Female, age 72, unknown 172.1
2699 Male, age 18, unknown 168.3
2590 Female, age 75, unknown 123.9
2583 Male, age 75, right hemisphere 85.2
Superior colliculus
nTPM: 111.0
2087 Female, age 72, unknown 173.4
1796 Male, age 53, unknown 139.0
2261 Male, age 18, unknown 136.9
1895 Male, age 76, right hemisphere 136.6
1913 Female, age 42, unknown 98.5
2668 Female, age 75, unknown 93.9
1839 Male, age 51, unknown 93.6
2587 Male, age 74, left hemisphere 87.8
2664 Male, age 75, both hemispheres 75.9
1995 Male, age 72, unknown 74.7
Ventral tegmental area
nTPM: 163.4
2218 Male, age 76, both hemispheres 265.9
2410 Female, age 72, unknown 204.0
1915 Female, age 42, unknown 187.8
1942 Male, age 51, unknown 121.5
2223 Female, age 72, unknown 106.2
2021 Male, age 53, unknown 94.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 226.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 226.5
Samples: 139

Max nTPM: 839.7
Min nTPM: 20.5
Std nTPM: 188.9
Median nTPM: 178.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 839.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 839.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 780.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 774.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 715.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 711.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 661.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 578.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 568.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 565.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 558.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.0
FF:10158-103A5 76 years, female 21.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 195.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 195.5
Samples: 4

Max nTPM: 319.7
Min nTPM: 42.2
Sample A Female 319.7
Sample B Female 124.7
Sample C Male 295.2
Sample D Male 42.2
Midbrain
nTPM: 151.2
Samples: 4

Max nTPM: 226.8
Min nTPM: 36.1
Sample A Female 36.1
Sample B Female 135.9
Sample C Male 226.8
Sample D Male 206.0
Periaqueductal gray
nTPM: 124.4
Samples: 3

Max nTPM: 186.3
Min nTPM: 87.4
Sample B Female 87.4
Sample C Male 186.3
Sample D Male 99.6
Superior colliculi
nTPM: 161.0
Samples: 4

Max nTPM: 196.5
Min nTPM: 96.0
Sample A Female 196.5
Sample B Female 96.0
Sample C Male 184.0
Sample D Male 167.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 161.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 161.4
Samples: 4

Max nTPM: 175.3
Min nTPM: 148.3
Sample A Male 175.3
Sample B Male 163.6
Sample C Female 158.3
Sample D Female 148.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.0
1210 Antisense, RP_040324_01_E03, Mouse strain C57BL/6J (56 days, male) 6.0
1209 Antisense, RP_040324_01_E03, Mouse strain C57BL/6J (56 days, male) 3.7

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