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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ITGA5 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
373.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
322.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
235.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
227.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
156.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
148.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
132.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
132.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
131.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
121.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
115.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
111.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
110.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
109.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
105.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
96.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
95.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
93.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
90.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
87.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
87.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
87.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
85.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
85.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
85.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
85.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
84.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
82.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
81.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
81.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
80.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
77.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
76.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
76.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
75.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
73.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
73.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
73.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
71.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
71.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
70.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
69.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
67.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
67.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
66.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
65.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
62.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
62.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
62.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
61.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
61.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
60.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
60.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
59.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
57.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
57.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
57.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
57.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
57.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
56.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
55.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
55.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
55.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
54.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
54.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
53.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
52.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
52.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
52.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
51.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
51.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
50.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
50.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
50.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
49.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
48.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
48.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
48.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
48.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
48.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
47.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
47.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
47.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
47.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
46.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
46.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
45.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
45.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
44.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
44.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
44.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
44.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
44.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
44.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
44.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
43.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
43.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
43.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
43.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
43.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
43.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
42.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
42.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
41.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
41.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
41.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
41.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
41.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
41.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
41.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
41.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
41.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
40.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
40.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
40.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
40.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
40.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
40.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
39.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
39.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
39.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
39.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
39.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
39.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
38.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
38.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
38.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
38.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
38.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
38.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
37.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
37.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
37.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
37.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
37.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
36.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
36.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
36.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
36.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
36.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
35.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
35.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
35.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
35.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
35.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
35.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
35.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
35.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
34.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
33.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
33.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
33.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
33.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
33.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
33.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
32.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
32.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
32.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
32.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
32.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
32.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
31.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
31.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
31.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
30.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
30.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
30.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
30.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
30.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
30.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
30.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
30.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
30.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
29.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
29.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
28.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
28.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
27.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
27.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
27.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
26.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
26.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
26.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
25.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
25.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
25.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
24.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
23.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
22.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
21.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
20.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
20.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
19.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
18.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
17.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ITGA5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.2
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
244.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
149.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
138.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
112.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
100.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
99.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
95.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
86.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
81.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
76.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
72.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
70.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
68.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
67.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
65.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
64.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
62.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
61.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
61.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
61.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
59.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
57.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
57.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
56.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
55.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
54.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
54.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
54.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
53.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
51.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
51.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
50.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
50.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
49.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
49.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
49.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
47.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
47.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
46.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
46.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
45.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
45.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
44.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
44.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
44.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
43.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
42.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
42.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
41.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
41.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
41.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
41.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
41.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
41.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
40.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
40.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
39.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
39.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
38.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
38.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
37.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
37.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
37.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
36.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
36.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
36.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
35.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
35.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
34.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
34.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
34.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
34.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
34.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
33.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
32.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
32.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
31.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
31.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
31.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
31.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
31.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
30.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
30.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
30.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
30.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
30.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
30.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
29.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
29.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
29.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
29.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
28.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
28.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
27.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
26.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
26.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
26.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
26.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
26.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
25.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
23.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
22.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
527
Tumor
1.2
343
Tumor
1.0
125
Tumor
1.0
131
Tumor
1.0
387
Tumor
1.0
363
Tumor
0.8
573
Tumor
0.7
257
Tumor
0.7
967
Tumor
0.6
727
Tumor
0.6
227
Tumor
0.6
851
Tumor
0.6
813
Tumor
0.5
283
Tumor
0.5
313
Tumor
0.4
616
Normal
0.4
648
Normal
0.4
196
Normal
0.4
271
Tumor
0.4
393
Tumor
0.4
344
Normal
0.4
523
Tumor
0.4
487
Tumor
0.4
368
Normal
0.4
636
Normal
0.4
1027
Tumor
0.4
112
Tumor
0.4
232
Normal
0.4
413
Tumor
0.4
314
Normal
0.4
425
Tumor
0.4
447
Tumor
0.4
817
Tumor
0.4
128
Normal
0.3
642
Normal
0.3
666
Normal
0.3
745
Tumor
0.3
396
Normal
0.3
516
Normal
0.3
445
Tumor
0.3
297
Tumor
0.3
824
Normal
0.3
474
Normal
0.3
863
Tumor
0.3
662
Normal
0.3
647
Tumor
0.3
432
Normal
0.3
222
Normal
0.3
983
Tumor
0.3
737
Tumor
0.3
272
Normal
0.3
356
Normal
0.3
463
Tumor
0.3
388
Normal
0.3
258
Normal
0.3
186
Normal
0.3
148
Normal
0.3
162
Normal
0.3
713
Tumor
0.3
448
Normal
0.3
628
Normal
0.2
361
Tumor
0.2
213
Tumor
0.2
744
Normal
0.2
426
Normal
0.2
878
Normal
0.2
147
Tumor
0.2
882
Normal
0.2
618
Normal
0.2
553
Tumor
0.2
375
Tumor
0.2
342
Normal
0.2
452
Normal
0.2
424
Normal
0.2
554
Normal
0.2
738
Normal
0.2
391
Tumor
0.2
663
Tumor
0.2
635
Tumor
0.2
746
Normal
0.2
172
Normal
0.2
428
Normal
0.2
534
Normal
0.2
464
Normal
0.2
412
Normal
0.2
955
Tumor
0.2
964
Normal
0.2
714
Normal
0.2
943
Tumor
0.2
223
Tumor
0.2
436
Normal
0.2
488
Normal
0.2
686
Normal
0.2
136
Normal
0.2
214
Normal
0.2
944
Normal
0.2
446
Normal
0.2
536
Normal
0.2
298
Normal
0.2
376
Normal
0.2
365
Tumor
0.2
742
Normal
0.2
672
Normal
0.1
816
Normal
0.1
815
Tumor
0.1
698
Normal
0.1
864
Normal
0.1
468
Normal
0.1
423
Tumor
0.1
574
Normal
0.1
912
Normal
0.1
564
Normal
0.1
132
Normal
0.1
422
Normal
0.1
366
Normal
0.1
728
Normal
0.1
312
Normal
0.1
111
Normal
0.1
924
Normal
0.1
278
Normal
0.1
572
Normal
0.1
984
Normal
0.1
414
Normal
0.1
386
Normal
0.1
866
Normal
0.1
187
Tumor
0.1
138
Normal
0.1
756
Normal
0.1
786
Normal
0.1
818
Normal
0.1
568
Normal
0.1
865
Tumor
0.1
1025
Tumor
0.1
858
Normal
0.1
228
Normal
0.1
664
Normal
0.1
444
Normal
0.1
921
Tumor
0.1
778
Normal
0.1
443
Tumor
0.1
968
Normal
0.1
484
Normal
0.1
546
Normal
0.1
192
Normal
0.1
367
Tumor
0.1
218
Normal
0.1
1028
Normal
0.1
124
Normal
0.1
723
Tumor
0.1
114
Normal
0.1
1026
Normal
0.1
526
Normal
0.1
1046
Normal
0.0
952
Normal
0.0
494
Normal
0.0
884
Normal
0.0
976
Normal
0.0
394
Normal
0.0
364
Normal
0.0
434
Normal
0.0
926
Normal
0.0
358
Normal
0.0
923
Tumor
0.0
328
Normal
0.0
217
Tumor
0.0
814
Normal
0.0
873
Tumor
0.0
1042
Normal
0.0
416
Normal
0.0
518
Normal
0.0
627
Tumor
0.0
1032
Normal
0.0
966
Normal
0.0
466
Normal
0.0
1022
Normal
0.0
528
Normal
0.0
777
Tumor
0.0
411
Tumor
0.0
721
Tumor
0.0
535
Tumor
0.0
1016
Normal
0.0
956
Normal
0.0
938
Normal
0.0
874
Normal
0.0
332
Normal
0.0
188
Normal
0.0
785
Tumor
0.0
877
Tumor
0.0
392
Normal
0.0
615
Tumor
0.0
914
Normal
0.0
538
Normal
0.0
685
Tumor
0.0
482
Normal
0.0
224
Normal
0.0
473
Tumor
0.0
722
Normal
0.0
954
Normal
0.0
1044
Normal
0.0
142
Normal
0.0
862
Normal
0.0
262
Normal
0.0
1013
Tumor
0.0
268
Normal
0.0
743
Tumor
0.0
958
Normal
0.0
696
Normal
0.0
1043
Tumor
0.0
498
Normal
0.0
456
Normal
0.0
868
Normal
0.0
354
Normal
0.0
982
Normal
0.0
641
Tumor
0.0
137
Tumor
0.0
545
Tumor
-0.1
352
Normal
-0.1
362
Normal
-0.1
286
Normal
-0.1
716
Normal
-0.1
492
Normal
-0.1
285
Tumor
-0.1
918
Normal
-0.1
852
Normal
-0.1
697
Tumor
-0.1
922
Normal
-0.1
384
Normal
-0.1
558
Normal
-0.1
1031
Tumor
-0.1
567
Tumor
-0.1
146
Normal
-0.1
415
Tumor
-0.1
617
Tumor
-0.1
357
Tumor
-0.1
517
Tumor
-0.1
1021
Tumor
-0.1
533
Tumor
-0.1
755
Tumor
-0.1
311
Tumor
-0.1
284
Normal
-0.1
1045
Tumor
-0.1
462
Normal
-0.1
481
Tumor
-0.1
421
Tumor
-0.1
514
Normal
-0.1
917
Tumor
-0.1
975
Tumor
-0.1
515
Tumor
-0.1
1014
Normal
-0.2
431
Tumor
-0.2
571
Tumor
-0.2
671
Tumor
-0.2
524
Normal
-0.2
433
Tumor
-0.2
355
Tumor
-0.2
491
Tumor
-0.2
212
Normal
-0.2
916
Normal
-0.2
191
Tumor
-0.2
963
Tumor
-0.2
277
Tumor
-0.2
472
Normal
-0.2
724
Normal
-0.2
195
Tumor
-0.2
525
Tumor
-0.2
497
Tumor
-0.2
353
Tumor
-0.2
477
Tumor
-0.2
965
Tumor
-0.2
141
Tumor
-0.2
126
Normal
-0.2
185
Tumor
-0.2
465
Tumor
-0.2
385
Tumor
-0.2
467
Tumor
-0.3
883
Tumor
-0.3
461
Tumor
-0.3
261
Tumor
-0.3
978
Normal
-0.3
493
Tumor
-0.3
145
Tumor
-0.3
327
Tumor
-0.3
211
Tumor
-0.3
341
Tumor
-0.3
435
Tumor
-0.3
537
Tumor
-0.3
478
Normal
-0.4
113
Tumor
-0.4
513
Tumor
-0.4
135
Tumor
-0.4
925
Tumor
-0.4
267
Tumor
-0.4
557
Tumor
-0.4
937
Tumor
-0.4
161
Tumor
-0.4
331
Tumor
-0.4
231
Tumor
-0.4
881
Tumor
-0.4
563
Tumor
-0.4
913
Tumor
-0.4
695
Tumor
-0.4
957
Tumor
-0.5
383
Tumor
-0.5
823
Tumor
-0.5
953
Tumor
-0.5
1015
Tumor
-0.5
455
Tumor
-0.5
221
Tumor
-0.5
857
Tumor
-0.5
981
Tumor
-0.5
861
Tumor
-0.6
171
Tumor
-0.6
395
Tumor
-0.6
127
Tumor
-0.6
915
Tumor
-0.6
715
Tumor
-0.7
867
Tumor
-0.7
951
Tumor
-0.7
977
Tumor
-0.7
741
Tumor
-0.7
665
Tumor
-0.8
483
Tumor
-0.8
451
Tumor
-0.8
123
Tumor
-0.8
427
Tumor
-0.9
911
Tumor
-0.9
661
Tumor
-0.9
471
Tumor
-1.0
1041
Tumor
-1.1
351
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
