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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SAP30BP is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
39.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
34.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
33.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
32.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
30.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
29.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
29.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
27.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
25.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
22.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
19.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SAP30BP is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.5
Number of samples
231
Samples
Sample
Description
TPM
DO45105
0 years, male, NA, stage:1, alive, 1680 days
48.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
46.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
46.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
45.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
44.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
43.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
41.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
40.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
40.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
39.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
38.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
38.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
38.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
37.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
36.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
36.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
35.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
34.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
33.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
30.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
30.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
30.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
29.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
29.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
28.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
28.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
27.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
27.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
27.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
27.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
26.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
26.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
26.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
26.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
24.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
24.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
23.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
23.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
22.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
20.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
18.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.3
957
Tumor
1.2
533
Tumor
1.0
743
Tumor
0.9
865
Tumor
0.8
411
Tumor
0.7
131
Tumor
0.7
727
Tumor
0.7
355
Tumor
0.7
983
Tumor
0.7
351
Tumor
0.7
1021
Tumor
0.6
497
Tumor
0.6
953
Tumor
0.6
447
Tumor
0.6
1031
Tumor
0.6
737
Tumor
0.6
523
Tumor
0.6
741
Tumor
0.6
1013
Tumor
0.6
724
Normal
0.5
211
Tumor
0.5
423
Tumor
0.5
473
Tumor
0.5
535
Tumor
0.5
285
Tumor
0.5
951
Tumor
0.5
923
Tumor
0.5
427
Tumor
0.5
661
Tumor
0.4
413
Tumor
0.4
877
Tumor
0.4
331
Tumor
0.4
425
Tumor
0.4
357
Tumor
0.4
477
Tumor
0.4
777
Tumor
0.4
695
Tumor
0.4
537
Tumor
0.4
817
Tumor
0.4
977
Tumor
0.4
487
Tumor
0.4
271
Tumor
0.4
921
Tumor
0.3
431
Tumor
0.3
161
Tumor
0.3
1025
Tumor
0.3
937
Tumor
0.3
227
Tumor
0.3
967
Tumor
0.3
663
Tumor
0.3
123
Tumor
0.3
867
Tumor
0.3
567
Tumor
0.3
545
Tumor
0.3
435
Tumor
0.3
465
Tumor
0.3
883
Tumor
0.3
277
Tumor
0.3
517
Tumor
0.3
221
Tumor
0.3
647
Tumor
0.3
395
Tumor
0.3
881
Tumor
0.3
553
Tumor
0.3
313
Tumor
0.2
341
Tumor
0.2
267
Tumor
0.2
815
Tumor
0.2
641
Tumor
0.2
981
Tumor
0.2
685
Tumor
0.2
141
Tumor
0.2
975
Tumor
0.2
715
Tumor
0.2
861
Tumor
0.2
471
Tumor
0.2
297
Tumor
0.2
361
Tumor
0.2
963
Tumor
0.2
851
Tumor
0.2
385
Tumor
0.2
491
Tumor
0.2
943
Tumor
0.2
483
Tumor
0.2
525
Tumor
0.2
391
Tumor
0.2
387
Tumor
0.2
813
Tumor
0.2
375
Tumor
0.2
823
Tumor
0.2
135
Tumor
0.2
311
Tumor
0.2
671
Tumor
0.2
1041
Tumor
0.1
863
Tumor
0.1
493
Tumor
0.1
785
Tumor
0.1
814
Normal
0.1
1043
Tumor
0.1
925
Tumor
0.1
1045
Tumor
0.1
455
Tumor
0.1
498
Normal
0.1
187
Tumor
0.1
755
Tumor
0.1
367
Tumor
0.1
463
Tumor
0.1
113
Tumor
0.1
137
Tumor
0.1
383
Tumor
0.1
415
Tumor
0.1
536
Normal
0.1
1015
Tumor
0.1
213
Tumor
0.1
443
Tumor
0.1
917
Tumor
0.1
635
Tumor
0.0
363
Tumor
0.0
433
Tumor
0.0
467
Tumor
0.0
461
Tumor
0.0
534
Normal
0.0
515
Tumor
0.0
217
Tumor
0.0
488
Normal
0.0
223
Tumor
0.0
513
Tumor
0.0
112
Tumor
0.0
527
Tumor
0.0
261
Tumor
0.0
873
Tumor
0.0
697
Tumor
0.0
298
Normal
0.0
966
Normal
0.0
327
Tumor
0.0
955
Tumor
0.0
528
Normal
0.0
257
Tumor
0.0
573
Tumor
0.0
426
Normal
0.0
557
Tumor
0.0
546
Normal
0.0
125
Tumor
0.0
474
Normal
0.0
615
Tumor
0.0
524
Normal
0.0
492
Normal
0.0
384
Normal
0.0
364
Normal
0.0
484
Normal
0.0
445
Tumor
0.0
283
Tumor
-0.1
1027
Tumor
-0.1
422
Normal
-0.1
911
Tumor
-0.1
912
Normal
-0.1
472
Normal
-0.1
563
Tumor
-0.1
394
Normal
-0.1
428
Normal
-0.1
665
Tumor
-0.1
964
Normal
-0.1
353
Tumor
-0.1
286
Normal
-0.1
518
Normal
-0.1
393
Tumor
-0.1
913
Tumor
-0.1
915
Tumor
-0.1
478
Normal
-0.1
127
Tumor
-0.1
451
Tumor
-0.1
968
Normal
-0.1
365
Tumor
-0.1
191
Tumor
-0.1
481
Tumor
-0.1
571
Tumor
-0.1
416
Normal
-0.1
938
Normal
-0.1
494
Normal
-0.1
538
Normal
-0.1
958
Normal
-0.1
332
Normal
-0.1
314
Normal
-0.1
884
Normal
-0.1
386
Normal
-0.1
944
Normal
-0.1
672
Normal
-0.1
412
Normal
-0.1
185
Tumor
-0.1
514
Normal
-0.1
388
Normal
-0.1
554
Normal
-0.1
224
Normal
-0.1
982
Normal
-0.1
312
Normal
-0.1
516
Normal
-0.1
228
Normal
-0.1
328
Normal
-0.2
526
Normal
-0.2
456
Normal
-0.2
666
Normal
-0.2
218
Normal
-0.2
396
Normal
-0.2
857
Tumor
-0.2
756
Normal
-0.2
984
Normal
-0.2
111
Normal
-0.2
978
Normal
-0.2
192
Normal
-0.2
342
Normal
-0.2
686
Normal
-0.2
462
Normal
-0.2
1014
Normal
-0.2
916
Normal
-0.2
114
Normal
-0.2
954
Normal
-0.2
721
Tumor
-0.2
778
Normal
-0.2
1046
Normal
-0.2
147
Tumor
-0.2
464
Normal
-0.2
424
Normal
-0.2
664
Normal
-0.2
1044
Normal
-0.2
914
Normal
-0.2
414
Normal
-0.2
482
Normal
-0.2
421
Tumor
-0.2
356
Normal
-0.2
852
Normal
-0.2
392
Normal
-0.2
231
Tumor
-0.2
662
Normal
-0.2
745
Tumor
-0.2
696
Normal
-0.2
1028
Normal
-0.2
918
Normal
-0.2
444
Normal
-0.2
882
Normal
-0.2
362
Normal
-0.2
452
Normal
-0.2
956
Normal
-0.2
714
Normal
-0.2
434
Normal
-0.2
368
Normal
-0.2
628
Normal
-0.2
366
Normal
-0.2
284
Normal
-0.2
142
Normal
-0.2
786
Normal
-0.2
648
Normal
-0.2
617
Tumor
-0.2
722
Normal
-0.2
976
Normal
-0.2
738
Normal
-0.2
278
Normal
-0.2
232
Normal
-0.2
188
Normal
-0.2
212
Normal
-0.2
952
Normal
-0.2
468
Normal
-0.2
864
Normal
-0.2
878
Normal
-0.2
343
Tumor
-0.3
195
Tumor
-0.3
924
Normal
-0.3
742
Normal
-0.3
268
Normal
-0.3
926
Normal
-0.3
466
Normal
-0.3
744
Normal
-0.3
728
Normal
-0.3
124
Normal
-0.3
564
Normal
-0.3
214
Normal
-0.3
128
Normal
-0.3
126
Normal
-0.3
716
Normal
-0.3
262
Normal
-0.3
344
Normal
-0.3
874
Normal
-0.3
1016
Normal
-0.3
222
Normal
-0.3
1022
Normal
-0.3
352
Normal
-0.3
145
Tumor
-0.3
376
Normal
-0.3
146
Normal
-0.3
558
Normal
-0.3
1032
Normal
-0.3
824
Normal
-0.3
858
Normal
-0.3
258
Normal
-0.3
922
Normal
-0.3
1026
Normal
-0.3
868
Normal
-0.3
148
Normal
-0.3
186
Normal
-0.3
816
Normal
-0.3
723
Tumor
-0.3
746
Normal
-0.3
1042
Normal
-0.3
862
Normal
-0.3
138
Normal
-0.3
354
Normal
-0.3
196
Normal
-0.3
436
Normal
-0.3
171
Tumor
-0.3
272
Normal
-0.3
448
Normal
-0.4
446
Normal
-0.4
358
Normal
-0.4
866
Normal
-0.4
172
Normal
-0.4
136
Normal
-0.4
162
Normal
-0.4
627
Tumor
-0.4
574
Normal
-0.4
698
Normal
-0.4
713
Tumor
-0.4
818
Normal
-0.4
636
Normal
-0.4
132
Normal
-0.4
572
Normal
-0.4
568
Normal
-0.5
616
Normal
-0.5
642
Normal
-0.5
432
Normal
-0.5
618
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
