MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.0 nTPM
HPA Brain:26.3 nTPM
GTEx:9.0 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:1.6 nTPM
Mouse:6.5 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 26.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.2
2219 Male, age 76, both hemispheres 47.9
2586 Male, age 75, left hemisphere 33.6
2828 Female, age 72, unknown 29.5
2411 Female, age 72, unknown 21.0
2666 Male, age 74, left hemisphere 19.5
2019 Male, age 18, unknown 18.0
1827 Male, age 72, unknown 17.5
1830 Male, age 51, unknown 16.5
1833 Male, age 53, unknown 14.6
1870 Female, age 42, unknown 13.9
Dorsal raphe nucleus
nTPM: 18.6
2047 Male, age 72, unknown 21.4
1828 Male, age 53, unknown 20.6
2750 Male, age 76, both hemispheres 19.0
2298 Female, age 72, unknown 16.9
2016 Female, age 72, unknown 15.0
Inferior colliculus
nTPM: 14.7
1848 Female, age 42, unknown 16.2
1890 Male, age 53, unknown 15.0
2849 Male, age 72, unknown 14.7
2097 Female, age 72, unknown 13.0
Median raphe nucleus
nTPM: 26.3
2220 Male, age 76, midline 26.3
Periaquaductal grey, anterior
nTPM: 19.4
2502 Female, age 75, unknown 21.5
1947 Male, age 18, unknown 19.8
1795 Male, age 51, unknown 16.7
Periaquaductal grey, dorsal
nTPM: 16.4
2464 Female, age 72, unknown 19.2
2850 Male, age 76, both hemispheres 18.0
1840 Male, age 53, unknown 15.0
1831 Male, age 72, unknown 13.4
Periaquaductal grey, lateral
nTPM: 18.5
2053 Male, age 18, unknown 22.2
2140 Male, age 76, both hemispheres 19.0
2272 Male, age 74, both hemispheres 14.1
Pretectal area
nTPM: 22.5
1944 Female, age 72, unknown 34.3
1817 Female, age 42, unknown 30.0
2007 Male, age 72, unknown 29.5
1816 Male, age 51, unknown 28.6
2667 Female, age 75, unknown 24.1
1815 Male, age 53, unknown 20.5
2316 Male, age 76, right hemisphere 20.2
2825 Male, age 18, unknown 18.9
2273 Male, age 74, both hemispheres 17.7
2407 Male, age 75, both hemispheres 11.9
2224 Female, age 72, unknown 11.6
Red nucleus
nTPM: 22.2
2588 Male, age 74, left hemisphere 29.3
2503 Female, age 72, unknown 27.8
2227 Male, age 72, unknown 23.9
2769 Male, age 72, unknown 23.2
1821 Female, age 72, unknown 22.6
1865 Male, age 51, unknown 22.4
2584 Male, age 75, left hemisphere 20.9
1954 Female, age 42, unknown 20.1
2823 Male, age 76, right hemisphere 19.4
2785 Male, age 18, unknown 19.1
1904 Male, age 53, unknown 18.8
2725 Female, age 75, unknown 18.8
Substantia nigra
nTPM: 22.9
1941 Male, age 53, unknown 45.3
1889 Female, age 72, unknown 24.8
2699 Male, age 18, unknown 24.3
2665 Male, age 74, both hemispheres 23.3
1851 Male, age 51, unknown 21.8
2409 Female, age 72, unknown 20.9
2590 Female, age 75, unknown 20.2
1916 Female, age 42, unknown 18.3
2583 Male, age 75, right hemisphere 16.4
2241 Male, age 72, unknown 13.5
Superior colliculus
nTPM: 21.5
2087 Female, age 72, unknown 31.2
1995 Male, age 72, unknown 27.1
2261 Male, age 18, unknown 23.2
1913 Female, age 42, unknown 21.7
2668 Female, age 75, unknown 20.9
1796 Male, age 53, unknown 20.4
1839 Male, age 51, unknown 20.2
2664 Male, age 75, both hemispheres 19.3
2587 Male, age 74, left hemisphere 17.7
1895 Male, age 76, right hemisphere 13.3
Ventral tegmental area
nTPM: 16.5
1942 Male, age 51, unknown 18.7
2223 Female, age 72, unknown 17.5
2410 Female, age 72, unknown 17.5
1915 Female, age 42, unknown 16.8
2218 Male, age 76, both hemispheres 15.1
2021 Male, age 53, unknown 13.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.0
Samples: 139

Max nTPM: 23.4
Min nTPM: 1.6
Std nTPM: 4.6
Median nTPM: 8.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 23.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 21.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 18.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 17.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 17.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 17.5
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 16.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 16.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 16.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 15.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 15.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.2
Sample C Male 0.1
Sample D Male 0.2
Midbrain
nTPM: 1.6
Samples: 4

Max nTPM: 3.6
Min nTPM: 0.2
Sample A Female 3.6
Sample B Female 0.2
Sample C Male 2.3
Sample D Male 0.3
Periaqueductal gray
nTPM: 0.4
Samples: 3

Max nTPM: 0.6
Min nTPM: 0.2
Sample B Female 0.6
Sample C Male 0.3
Sample D Male 0.2
Superior colliculi
nTPM: 0.7
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.2
Sample A Female 0.7
Sample B Female 0.7
Sample C Male 1.1
Sample D Male 0.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.5
Samples: 4

Max nTPM: 7.2
Min nTPM: 5.4
Sample A Male 7.2
Sample B Male 5.4
Sample C Female 6.1
Sample D Female 7.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
75888748 Antisense, RP_060502_01_A02, Mouse strain C57BL/6J (56 days, male) 1.2
75197492 Antisense, RP_060502_01_A02, Mouse strain C57BL/6J (56 days, male) 0.8

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