MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.4 nTPM
HPA Brain:11.9 nTPM
GTEx:9.4 nTPM
FANTOM5:5.0 Scaled Tags Per Million
Pig:10.5 nTPM
Mouse:2.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 11.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.7
2586 Male, age 75, left hemisphere 20.8
1833 Male, age 53, unknown 11.6
2411 Female, age 72, unknown 11.2
2666 Male, age 74, left hemisphere 11.2
2828 Female, age 72, unknown 11.2
1830 Male, age 51, unknown 11.1
1870 Female, age 42, unknown 10.7
1827 Male, age 72, unknown 10.5
2019 Male, age 18, unknown 10.3
2219 Male, age 76, both hemispheres 8.1
Dorsal raphe nucleus
nTPM: 9.4
2016 Female, age 72, unknown 10.1
2750 Male, age 76, both hemispheres 9.7
1828 Male, age 53, unknown 9.6
2047 Male, age 72, unknown 9.3
2298 Female, age 72, unknown 8.1
Inferior colliculus
nTPM: 10.7
2849 Male, age 72, unknown 11.2
1890 Male, age 53, unknown 10.9
2097 Female, age 72, unknown 10.3
1848 Female, age 42, unknown 10.2
Median raphe nucleus
nTPM: 8.1
2220 Male, age 76, midline 8.1
Periaquaductal grey, anterior
nTPM: 11.9
2502 Female, age 75, unknown 12.3
1947 Male, age 18, unknown 12.1
1795 Male, age 51, unknown 11.2
Periaquaductal grey, dorsal
nTPM: 10.4
1840 Male, age 53, unknown 11.5
1831 Male, age 72, unknown 10.9
2464 Female, age 72, unknown 9.9
2850 Male, age 76, both hemispheres 9.5
Periaquaductal grey, lateral
nTPM: 9.5
2140 Male, age 76, both hemispheres 10.4
2053 Male, age 18, unknown 10.0
2272 Male, age 74, both hemispheres 8.0
Pretectal area
nTPM: 10.7
1817 Female, age 42, unknown 13.0
2407 Male, age 75, both hemispheres 12.7
2007 Male, age 72, unknown 11.9
1816 Male, age 51, unknown 11.6
1815 Male, age 53, unknown 10.7
2667 Female, age 75, unknown 10.5
1944 Female, age 72, unknown 10.3
2825 Male, age 18, unknown 10.1
2316 Male, age 76, right hemisphere 9.3
2273 Male, age 74, both hemispheres 9.2
2224 Female, age 72, unknown 8.0
Red nucleus
nTPM: 11.1
2584 Male, age 75, left hemisphere 14.1
2588 Male, age 74, left hemisphere 12.4
1904 Male, age 53, unknown 12.1
1954 Female, age 42, unknown 11.7
2785 Male, age 18, unknown 11.7
2769 Male, age 72, unknown 11.5
2823 Male, age 76, right hemisphere 10.6
1821 Female, age 72, unknown 10.5
1865 Male, age 51, unknown 10.5
2227 Male, age 72, unknown 9.8
2725 Female, age 75, unknown 9.3
2503 Female, age 72, unknown 9.1
Substantia nigra
nTPM: 9.9
2583 Male, age 75, right hemisphere 13.2
2590 Female, age 75, unknown 11.4
2665 Male, age 74, both hemispheres 11.3
1851 Male, age 51, unknown 10.8
2241 Male, age 72, unknown 9.3
1889 Female, age 72, unknown 9.2
1916 Female, age 42, unknown 9.1
2699 Male, age 18, unknown 8.8
1941 Male, age 53, unknown 8.1
2409 Female, age 72, unknown 7.7
Superior colliculus
nTPM: 11.5
2664 Male, age 75, both hemispheres 19.2
2261 Male, age 18, unknown 12.6
1796 Male, age 53, unknown 11.3
2668 Female, age 75, unknown 11.1
1995 Male, age 72, unknown 11.0
1913 Female, age 42, unknown 10.4
2087 Female, age 72, unknown 10.4
1839 Male, age 51, unknown 9.7
2587 Male, age 74, left hemisphere 9.6
1895 Male, age 76, right hemisphere 9.5
Ventral tegmental area
nTPM: 9.7
2223 Female, age 72, unknown 10.8
1942 Male, age 51, unknown 10.5
2218 Male, age 76, both hemispheres 9.9
2410 Female, age 72, unknown 9.5
1915 Female, age 42, unknown 8.8
2021 Male, age 53, unknown 8.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.4
Samples: 139

Max nTPM: 29.1
Min nTPM: 4.5
Std nTPM: 3.2
Median nTPM: 8.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 29.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 20.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 20.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 19.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 16.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 16.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 14.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 14.3
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 14.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 13.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 13.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 5.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.0
FF:10158-103A5 76 years, female 5.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.9
Samples: 4

Max nTPM: 9.4
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 9.4
Sample C Male 7.0
Sample D Male 8.7
Midbrain
nTPM: 8.5
Samples: 4

Max nTPM: 10.2
Min nTPM: 7.5
Sample A Female 10.2
Sample B Female 8.7
Sample C Male 7.5
Sample D Male 7.6
Periaqueductal gray
nTPM: 7.4
Samples: 3

Max nTPM: 7.5
Min nTPM: 7.2
Sample B Female 7.2
Sample C Male 7.4
Sample D Male 7.5
Superior colliculi
nTPM: 10.5
Samples: 4

Max nTPM: 15.3
Min nTPM: 8.4
Sample A Female 9.5
Sample B Female 15.3
Sample C Male 8.9
Sample D Male 8.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.1
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.5
Sample A Male 1.8
Sample B Male 1.5
Sample C Female 2.5
Sample D Female 2.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69782987 Antisense, RP_050505_04_B06, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org