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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SQSTM1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
513.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5790.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4801.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3385.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2828.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2610.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2462.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2351.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2304.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2086.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1826.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1804.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1790.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1701.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1654.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1627.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1489.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1479.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1473.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1449.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1430.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1424.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1414.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1407.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1369.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1291.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1285.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1247.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1199.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1195.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1150.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1123.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1121.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1077.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1072.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1046.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1032.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1005.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
999.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
981.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
952.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
938.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
929.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
912.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
908.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
903.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
897.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
876.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
858.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
835.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
821.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
821.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
816.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
807.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
806.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
791.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
780.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
772.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
768.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
762.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
759.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
742.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
736.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
733.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
726.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
721.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
720.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
719.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
719.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
718.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
717.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
709.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
701.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
699.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
683.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
681.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
673.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
666.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
659.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
654.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
652.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
646.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
644.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
643.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
635.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
628.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
626.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
610.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
608.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
608.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
608.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
603.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
597.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
595.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
594.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
593.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
590.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
589.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
588.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
578.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
576.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
575.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
573.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
573.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
572.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
558.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
553.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
545.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
544.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
537.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
523.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
517.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
516.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
512.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
503.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
502.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
497.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
490.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
490.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
486.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
482.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
479.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
477.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
476.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
474.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
467.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
463.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
463.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
461.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
460.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
452.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
449.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
446.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
444.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
443.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
431.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
427.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
427.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
424.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
424.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
421.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
419.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
419.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
416.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
414.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
410.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
409.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
409.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
408.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
406.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
400.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
400.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
398.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
398.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
396.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
396.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
393.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
387.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
386.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
383.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
371.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
368.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
366.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
366.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
365.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
364.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
362.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
362.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
360.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
359.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
358.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
356.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
356.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
354.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
353.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
352.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
352.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
348.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
346.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
344.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
343.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
343.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
340.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
340.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
339.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
336.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
336.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
334.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
332.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
332.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
330.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
330.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
329.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
329.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
328.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
326.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
325.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
322.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
319.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
318.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
318.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
317.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
316.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
314.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
312.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
312.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
310.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
309.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
306.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
305.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
303.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
302.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
301.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
300.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
300.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
298.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
298.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
297.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
296.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
295.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
288.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
288.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
284.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
283.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
283.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
283.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
283.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
282.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
279.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
279.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
278.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
276.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
272.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
272.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
266.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
266.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
265.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
265.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
261.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
259.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
258.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
253.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
251.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
249.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
249.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
246.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
246.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
246.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
245.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
245.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
244.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
243.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
238.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
237.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
236.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
235.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
234.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
233.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
229.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
228.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
226.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
226.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
226.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
224.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
223.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
223.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
220.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
220.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
216.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
215.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
213.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
211.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
207.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
206.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
205.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
203.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
201.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
200.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
195.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
195.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
194.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
193.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
192.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
191.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
191.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
191.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
190.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
189.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
186.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
184.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
183.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
182.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
181.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
181.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
181.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
180.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
179.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
179.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
178.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
178.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
176.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
173.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
172.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
171.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
169.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
168.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
167.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
165.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
164.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
158.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
156.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
156.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
156.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
154.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
152.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
152.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
149.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
147.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
147.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
146.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
145.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
145.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
142.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
141.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
139.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
138.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
136.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
136.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
136.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
136.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
136.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
135.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
133.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
133.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
132.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
131.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
128.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
121.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
119.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
118.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
116.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
112.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
112.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
111.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
109.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
108.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
101.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
100.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
92.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
91.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
89.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
88.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
84.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
70.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
66.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
63.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
57.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
52.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
42.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
27.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
27.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
24.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SQSTM1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
475.4
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
2452.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
2447.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
2015.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
1903.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
1783.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
1776.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1754.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
1387.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1330.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
1258.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
1256.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
1246.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1239.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
1199.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
1147.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
1133.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
1089.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
985.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
978.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
967.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
906.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
900.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
898.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
876.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
858.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
844.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
844.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
835.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
828.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
826.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
819.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
813.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
803.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
783.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
776.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
776.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
771.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
755.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
753.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
733.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
721.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
692.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
679.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
671.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
670.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
667.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
663.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
662.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
649.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
647.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
643.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
641.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
637.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
633.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
613.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
613.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
612.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
611.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
602.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
596.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
593.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
592.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
591.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
589.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
561.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
543.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
538.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
530.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
526.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
524.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
524.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
523.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
522.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
515.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
513.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
503.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
497.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
490.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
482.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
477.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
475.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
469.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
458.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
455.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
453.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
452.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
448.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
445.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
441.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
433.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
418.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
417.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
414.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
412.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
407.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
403.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
389.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
388.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
385.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
381.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
380.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
379.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
378.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
376.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
375.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
374.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
372.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
371.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
363.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
361.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
360.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
360.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
360.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
359.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
357.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
356.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
353.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
351.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
348.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
345.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
337.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
333.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
332.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
328.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
324.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
321.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
319.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
317.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
311.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
311.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
310.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
305.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
305.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
304.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
303.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
298.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
297.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
297.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
296.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
295.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
293.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
291.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
291.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
290.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
288.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
284.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
280.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
279.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
278.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
274.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
268.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
267.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
265.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
265.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
264.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
264.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
263.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
260.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
256.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
254.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
253.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
252.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
250.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
247.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
246.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
242.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
240.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
240.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
238.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
237.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
236.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
235.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
226.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
222.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
221.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
219.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
218.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
217.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
213.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
212.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
211.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
210.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
210.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
209.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
207.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
201.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
201.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
200.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
200.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
199.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
198.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
195.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
192.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
188.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
187.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
186.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
186.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
185.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
183.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
182.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
178.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
172.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
169.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
167.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
167.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
164.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
164.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
163.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
162.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
161.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
158.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
150.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
149.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
148.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
147.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
146.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
144.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
137.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
136.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
123.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
122.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
122.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
119.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
116.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
114.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
110.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
109.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
108.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
103.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
101.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
73.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
3.3
525
Tumor
2.8
375
Tumor
2.8
427
Tumor
2.4
491
Tumor
2.4
267
Tumor
2.2
1041
Tumor
2.1
911
Tumor
2.1
145
Tumor
2.0
857
Tumor
2.0
191
Tumor
2.0
573
Tumor
1.9
383
Tumor
1.7
925
Tumor
1.7
913
Tumor
1.7
741
Tumor
1.7
297
Tumor
1.5
351
Tumor
1.5
535
Tumor
1.4
123
Tumor
1.1
223
Tumor
1.1
663
Tumor
1.1
1013
Tumor
1.0
1045
Tumor
0.9
617
Tumor
0.9
415
Tumor
0.9
211
Tumor
0.9
387
Tumor
0.8
443
Tumor
0.7
873
Tumor
0.5
951
Tumor
0.4
471
Tumor
0.4
313
Tumor
0.3
567
Tumor
0.3
135
Tumor
0.2
257
Tumor
0.2
395
Tumor
0.2
823
Tumor
0.2
187
Tumor
0.2
527
Tumor
0.2
1021
Tumor
0.2
161
Tumor
0.2
563
Tumor
0.1
493
Tumor
0.1
367
Tumor
0.1
477
Tumor
0.1
428
Normal
0.0
213
Tumor
0.0
445
Tumor
0.0
376
Normal
0.0
537
Tumor
0.0
368
Normal
-0.1
817
Tumor
-0.1
534
Normal
-0.1
526
Normal
-0.1
361
Tumor
-0.1
451
Tumor
-0.1
391
Tumor
-0.2
665
Tumor
-0.2
231
Tumor
-0.2
423
Tumor
-0.2
528
Normal
-0.2
384
Normal
-0.2
745
Tumor
-0.2
331
Tumor
-0.2
433
Tumor
-0.2
627
Tumor
-0.2
724
Normal
-0.2
557
Tumor
-0.2
385
Tumor
-0.2
953
Tumor
-0.2
343
Tumor
-0.2
755
Tumor
-0.2
365
Tumor
-0.3
311
Tumor
-0.3
983
Tumor
-0.3
615
Tumor
-0.3
413
Tumor
-0.4
883
Tumor
-0.4
366
Normal
-0.4
483
Tumor
-0.4
641
Tumor
-0.4
574
Normal
-0.4
357
Tumor
-0.4
221
Tumor
-0.4
353
Tumor
-0.4
362
Normal
-0.4
147
Tumor
-0.4
513
Tumor
-0.4
571
Tumor
-0.4
192
Normal
-0.5
217
Tumor
-0.5
214
Normal
-0.5
431
Tumor
-0.5
271
Tumor
-0.5
861
Tumor
-0.5
546
Normal
-0.5
185
Tumor
-0.5
957
Tumor
-0.5
137
Tumor
-0.5
1027
Tumor
-0.6
865
Tumor
-0.6
721
Tumor
-0.6
914
Normal
-0.6
553
Tumor
-0.6
195
Tumor
-0.6
538
Normal
-0.6
277
Tumor
-0.6
851
Tumor
-0.6
112
Tumor
-0.6
312
Normal
-0.6
685
Tumor
-0.6
514
Normal
-0.6
554
Normal
-0.6
461
Tumor
-0.6
262
Normal
-0.6
141
Tumor
-0.6
425
Tumor
-0.6
1042
Normal
-0.6
268
Normal
-0.6
422
Normal
-0.6
912
Normal
-0.6
278
Normal
-0.7
421
Tumor
-0.7
473
Tumor
-0.7
388
Normal
-0.7
146
Normal
-0.7
492
Normal
-0.7
564
Normal
-0.7
424
Normal
-0.7
487
Tumor
-0.7
923
Tumor
-0.7
965
Tumor
-0.7
515
Tumor
-0.7
1025
Tumor
-0.7
568
Normal
-0.7
488
Normal
-0.7
222
Normal
-0.7
393
Tumor
-0.7
363
Tumor
-0.8
414
Normal
-0.8
435
Tumor
-0.8
298
Normal
-0.8
171
Tumor
-0.8
524
Normal
-0.8
523
Tumor
-0.8
196
Normal
-0.8
352
Normal
-0.8
671
Tumor
-0.8
977
Tumor
-0.8
132
Normal
-0.8
664
Normal
-0.8
484
Normal
-0.8
232
Normal
-0.8
426
Normal
-0.8
227
Tumor
-0.8
411
Tumor
-0.8
884
Normal
-0.8
516
Normal
-0.8
517
Tumor
-0.8
572
Normal
-0.8
444
Normal
-0.8
1015
Tumor
-0.8
1014
Normal
-0.8
858
Normal
-0.8
355
Tumor
-0.9
465
Tumor
-0.9
975
Tumor
-0.9
867
Tumor
-0.9
258
Normal
-0.9
218
Normal
-0.9
926
Normal
-0.9
881
Tumor
-0.9
344
Normal
-0.9
518
Normal
-0.9
472
Normal
-0.9
558
Normal
-0.9
498
Normal
-0.9
478
Normal
-0.9
742
Normal
-0.9
127
Tumor
-0.9
272
Normal
-0.9
494
Normal
-0.9
545
Tumor
-0.9
342
Normal
-0.9
314
Normal
-0.9
882
Normal
-0.9
261
Tumor
-0.9
138
Normal
-1.0
136
Normal
-1.0
984
Normal
-1.0
497
Tumor
-1.0
113
Tumor
-1.0
332
Normal
-1.0
482
Normal
-1.0
1031
Tumor
-1.0
396
Normal
-1.0
967
Tumor
-1.0
481
Tumor
-1.0
446
Normal
-1.0
392
Normal
-1.0
188
Normal
-1.0
697
Tumor
-1.0
738
Normal
-1.0
186
Normal
-1.0
666
Normal
-1.0
125
Tumor
-1.0
354
Normal
-1.1
1016
Normal
-1.1
358
Normal
-1.1
713
Tumor
-1.1
148
Normal
-1.1
224
Normal
-1.1
878
Normal
-1.1
462
Normal
-1.1
728
Normal
-1.1
877
Tumor
-1.1
283
Tumor
-1.1
126
Normal
-1.1
416
Normal
-1.1
172
Normal
-1.1
432
Normal
-1.1
648
Normal
-1.1
124
Normal
-1.1
982
Normal
-1.1
448
Normal
-1.1
536
Normal
-1.1
162
Normal
-1.1
1032
Normal
-1.1
915
Tumor
-1.1
142
Normal
-1.2
474
Normal
-1.2
744
Normal
-1.2
434
Normal
-1.2
647
Tumor
-1.2
921
Tumor
-1.2
662
Normal
-1.2
978
Normal
-1.2
386
Normal
-1.2
723
Tumor
-1.2
963
Tumor
-1.2
1026
Normal
-1.2
436
Normal
-1.2
635
Tumor
-1.2
114
Normal
-1.2
672
Normal
-1.2
1022
Normal
-1.2
341
Tumor
-1.2
1046
Normal
-1.2
981
Tumor
-1.2
922
Normal
-1.2
737
Tumor
-1.3
394
Normal
-1.3
818
Normal
-1.3
852
Normal
-1.3
743
Tumor
-1.3
816
Normal
-1.3
824
Normal
-1.3
228
Normal
-1.3
364
Normal
-1.3
111
Normal
-1.3
328
Normal
-1.3
698
Normal
-1.3
815
Tumor
-1.3
917
Tumor
-1.3
1028
Normal
-1.3
286
Normal
-1.3
1044
Normal
-1.3
412
Normal
-1.3
356
Normal
-1.4
727
Tumor
-1.4
918
Normal
-1.4
661
Tumor
-1.4
937
Tumor
-1.4
966
Normal
-1.4
128
Normal
-1.4
916
Normal
-1.4
467
Tumor
-1.4
863
Tumor
-1.4
964
Normal
-1.4
968
Normal
-1.4
722
Normal
-1.4
447
Tumor
-1.4
455
Tumor
-1.4
618
Normal
-1.4
327
Tumor
-1.5
954
Normal
-1.5
924
Normal
-1.5
777
Tumor
-1.5
976
Normal
-1.5
1043
Tumor
-1.5
642
Normal
-1.5
212
Normal
-1.5
944
Normal
-1.5
958
Normal
-1.5
874
Normal
-1.5
955
Tumor
-1.6
868
Normal
-1.6
636
Normal
-1.6
131
Tumor
-1.6
952
Normal
-1.6
938
Normal
-1.6
866
Normal
-1.6
284
Normal
-1.6
956
Normal
-1.6
452
Normal
-1.6
464
Normal
-1.6
943
Tumor
-1.7
468
Normal
-1.7
714
Normal
-1.7
463
Tumor
-1.7
466
Normal
-1.7
686
Normal
-1.7
628
Normal
-1.7
715
Tumor
-1.7
864
Normal
-1.8
862
Normal
-1.8
616
Normal
-1.8
285
Tumor
-1.8
456
Normal
-1.8
813
Tumor
-1.9
716
Normal
-1.9
786
Normal
-2.0
814
Normal
-2.0
695
Tumor
-2.0
696
Normal
-2.1
746
Normal
-2.1
756
Normal
-2.1
785
Tumor
-2.2
778
Normal
-2.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.