We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP1R16A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
39.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
37.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
29.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP1R16A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.5
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
202.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
143.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
131.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
118.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
117.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
116.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
106.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
104.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
99.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
97.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
92.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
90.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
89.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
84.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
81.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
75.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
75.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
72.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
69.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
66.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
64.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
62.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
62.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
60.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
59.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
57.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
56.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
56.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
56.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
55.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
55.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
55.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
55.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
54.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
53.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
52.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
51.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
51.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
50.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
50.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
49.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
49.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
49.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
48.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
48.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
48.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
47.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
47.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
46.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
46.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
46.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
46.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
46.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
45.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
45.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
45.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
44.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
44.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
43.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
43.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
43.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
42.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
42.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
41.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
41.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
41.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
40.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
39.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
39.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
39.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
39.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
39.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
39.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
39.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
38.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
38.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
38.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
37.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
37.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
37.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
37.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
37.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
37.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
37.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
37.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
36.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
36.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
36.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
35.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
34.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
34.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
33.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
33.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
33.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
32.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
32.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
32.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
32.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
31.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
31.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
31.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
31.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
30.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
30.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
29.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
29.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
29.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
28.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
28.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
28.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
28.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
27.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
27.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
26.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
26.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
24.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
23.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
21.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
21.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.5
482
Normal
1.4
911
Tumor
1.3
557
Tumor
1.2
685
Tumor
1.0
697
Tumor
1.0
1041
Tumor
1.0
663
Tumor
0.9
465
Tumor
0.8
915
Tumor
0.8
462
Normal
0.8
863
Tumor
0.7
964
Normal
0.7
481
Tumor
0.7
721
Tumor
0.7
636
Normal
0.7
715
Tumor
0.7
926
Normal
0.7
431
Tumor
0.7
912
Normal
0.7
884
Normal
0.7
925
Tumor
0.7
695
Tumor
0.6
1046
Normal
0.6
914
Normal
0.6
954
Normal
0.6
572
Normal
0.6
882
Normal
0.6
823
Tumor
0.6
922
Normal
0.6
714
Normal
0.6
368
Normal
0.6
414
Normal
0.6
424
Normal
0.6
366
Normal
0.5
951
Tumor
0.5
938
Normal
0.5
568
Normal
0.5
878
Normal
0.5
944
Normal
0.5
958
Normal
0.5
746
Normal
0.5
755
Tumor
0.5
376
Normal
0.5
868
Normal
0.5
968
Normal
0.5
866
Normal
0.5
422
Normal
0.5
963
Tumor
0.5
698
Normal
0.5
867
Tumor
0.5
862
Normal
0.5
918
Normal
0.5
571
Tumor
0.5
786
Normal
0.5
937
Tumor
0.5
756
Normal
0.5
412
Normal
0.5
132
Normal
0.5
956
Normal
0.5
112
Tumor
0.4
558
Normal
0.4
641
Tumor
0.4
331
Tumor
0.4
1032
Normal
0.4
362
Normal
0.4
618
Normal
0.4
384
Normal
0.4
924
Normal
0.4
778
Normal
0.4
1022
Normal
0.4
818
Normal
0.4
277
Tumor
0.4
286
Normal
0.4
564
Normal
0.4
278
Normal
0.4
327
Tumor
0.4
824
Normal
0.4
127
Tumor
0.4
396
Normal
0.4
777
Tumor
0.4
426
Normal
0.4
128
Normal
0.4
913
Tumor
0.4
977
Tumor
0.4
628
Normal
0.3
433
Tumor
0.3
415
Tumor
0.3
976
Normal
0.3
864
Normal
0.3
395
Tumor
0.3
361
Tumor
0.3
642
Normal
0.3
387
Tumor
0.3
858
Normal
0.3
745
Tumor
0.3
298
Normal
0.3
464
Normal
0.3
392
Normal
0.3
617
Tumor
0.3
627
Tumor
0.3
1025
Tumor
0.3
615
Tumor
0.3
881
Tumor
0.3
574
Normal
0.3
686
Normal
0.3
816
Normal
0.3
873
Tumor
0.3
616
Normal
0.3
111
Normal
0.2
916
Normal
0.2
472
Normal
0.2
1042
Normal
0.2
375
Tumor
0.2
865
Tumor
0.2
365
Tumor
0.2
228
Normal
0.2
313
Tumor
0.2
212
Normal
0.2
664
Normal
0.2
364
Normal
0.2
696
Normal
0.2
161
Tumor
0.2
328
Normal
0.2
852
Normal
0.2
466
Normal
0.2
435
Tumor
0.2
883
Tumor
0.2
113
Tumor
0.2
1026
Normal
0.2
716
Normal
0.2
722
Normal
0.2
952
Normal
0.2
874
Normal
0.1
648
Normal
0.1
483
Tumor
0.1
672
Normal
0.1
436
Normal
0.1
478
Normal
0.1
877
Tumor
0.1
383
Tumor
0.1
474
Normal
0.1
1027
Tumor
0.1
312
Normal
0.1
136
Normal
0.1
284
Normal
0.1
563
Tumor
0.1
921
Tumor
0.1
955
Tumor
0.1
386
Normal
0.1
1028
Normal
0.1
186
Normal
0.1
114
Normal
0.1
965
Tumor
0.1
135
Tumor
0.1
394
Normal
0.1
1014
Normal
0.1
124
Normal
0.1
148
Normal
0.1
857
Tumor
0.1
456
Normal
0.1
367
Tumor
0.1
185
Tumor
0.0
332
Normal
0.0
785
Tumor
0.0
851
Tumor
0.0
172
Normal
0.0
162
Normal
0.0
665
Tumor
0.0
138
Normal
0.0
1015
Tumor
0.0
388
Normal
0.0
428
Normal
0.0
467
Tumor
0.0
666
Normal
0.0
142
Normal
0.0
452
Normal
0.0
981
Tumor
0.0
1045
Tumor
0.0
484
Normal
0.0
1044
Normal
0.0
463
Tumor
0.0
953
Tumor
0.0
416
Normal
0.0
473
Tumor
0.0
477
Tumor
0.0
943
Tumor
0.0
966
Normal
0.0
984
Normal
0.0
1013
Tumor
0.0
446
Normal
0.0
861
Tumor
0.0
227
Tumor
-0.1
536
Normal
-0.1
297
Tumor
-0.1
283
Tumor
-0.1
192
Normal
-0.1
444
Normal
-0.1
314
Normal
-0.1
448
Normal
-0.1
224
Normal
-0.1
141
Tumor
-0.1
917
Tumor
-0.1
171
Tumor
-0.1
923
Tumor
-0.1
427
Tumor
-0.1
393
Tumor
-0.1
487
Tumor
-0.1
126
Normal
-0.1
356
Normal
-0.1
146
Normal
-0.1
423
Tumor
-0.1
488
Normal
-0.1
363
Tumor
-0.1
223
Tumor
-0.2
213
Tumor
-0.2
573
Tumor
-0.2
957
Tumor
-0.2
195
Tumor
-0.2
817
Tumor
-0.2
662
Normal
-0.2
188
Normal
-0.2
1016
Normal
-0.2
391
Tumor
-0.2
432
Normal
-0.2
214
Normal
-0.2
147
Tumor
-0.2
443
Tumor
-0.3
1031
Tumor
-0.3
385
Tumor
-0.3
468
Normal
-0.3
461
Tumor
-0.3
421
Tumor
-0.3
713
Tumor
-0.3
975
Tumor
-0.3
982
Normal
-0.3
1021
Tumor
-0.3
445
Tumor
-0.3
647
Tumor
-0.3
451
Tumor
-0.3
1043
Tumor
-0.3
187
Tumor
-0.3
145
Tumor
-0.3
123
Tumor
-0.4
411
Tumor
-0.4
471
Tumor
-0.4
567
Tumor
-0.4
196
Normal
-0.4
635
Tumor
-0.4
535
Tumor
-0.4
131
Tumor
-0.4
125
Tumor
-0.4
978
Normal
-0.4
137
Tumor
-0.4
814
Normal
-0.4
498
Normal
-0.4
285
Tumor
-0.4
191
Tumor
-0.5
434
Normal
-0.5
355
Tumor
-0.5
494
Normal
-0.5
815
Tumor
-0.5
311
Tumor
-0.5
813
Tumor
-0.5
493
Tumor
-0.5
211
Tumor
-0.5
447
Tumor
-0.5
218
Normal
-0.6
492
Normal
-0.6
413
Tumor
-0.7
221
Tumor
-0.8
217
Tumor
-0.8
425
Tumor
-0.9
497
Tumor
-0.9
455
Tumor
-0.9
671
Tumor
-0.9
983
Tumor
-1.0
222
Normal
-1.1
491
Tumor
-1.3
661
Tumor
-1.4
351
Tumor
N/A
231
Tumor
N/A
352
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
741
Tumor
N/A
742
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
515
Tumor
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
527
Tumor
N/A
528
Normal
N/A
533
Tumor
N/A
534
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
545
Tumor
N/A
546
Normal
N/A
553
Tumor
N/A
554
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
