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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CPSF4 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
64.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
52.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
44.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
41.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
40.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
35.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
35.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
34.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
33.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
30.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
29.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
29.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
25.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
22.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
21.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
20.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
20.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
19.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CPSF4 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.2
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
168.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
42.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
40.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
34.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
33.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
32.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
29.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
29.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
26.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
22.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
497
Tumor
1.1
967
Tumor
1.1
951
Tumor
1.0
131
Tumor
1.0
965
Tumor
1.0
743
Tumor
0.9
865
Tumor
0.8
285
Tumor
0.8
313
Tumor
0.8
367
Tumor
0.8
983
Tumor
0.7
331
Tumor
0.7
473
Tumor
0.6
413
Tumor
0.6
1013
Tumor
0.6
1025
Tumor
0.6
351
Tumor
0.6
975
Tumor
0.6
937
Tumor
0.6
877
Tumor
0.6
463
Tumor
0.6
957
Tumor
0.6
211
Tumor
0.5
537
Tumor
0.5
425
Tumor
0.5
385
Tumor
0.5
977
Tumor
0.5
227
Tumor
0.5
471
Tumor
0.5
921
Tumor
0.5
277
Tumor
0.5
815
Tumor
0.5
283
Tumor
0.5
1021
Tumor
0.5
355
Tumor
0.5
1031
Tumor
0.5
271
Tumor
0.4
545
Tumor
0.4
411
Tumor
0.4
487
Tumor
0.4
755
Tumor
0.4
727
Tumor
0.4
523
Tumor
0.4
427
Tumor
0.4
363
Tumor
0.4
923
Tumor
0.4
491
Tumor
0.4
817
Tumor
0.4
861
Tumor
0.4
517
Tumor
0.4
341
Tumor
0.4
641
Tumor
0.3
123
Tumor
0.3
943
Tumor
0.3
483
Tumor
0.3
665
Tumor
0.3
533
Tumor
0.3
297
Tumor
0.3
467
Tumor
0.3
431
Tumor
0.3
953
Tumor
0.3
221
Tumor
0.3
443
Tumor
0.3
1041
Tumor
0.3
161
Tumor
0.3
695
Tumor
0.3
1043
Tumor
0.2
883
Tumor
0.2
671
Tumor
0.2
423
Tumor
0.2
141
Tumor
0.2
851
Tumor
0.2
223
Tumor
0.2
663
Tumor
0.2
664
Normal
0.2
672
Normal
0.2
881
Tumor
0.2
647
Tumor
0.2
535
Tumor
0.2
963
Tumor
0.2
685
Tumor
0.2
661
Tumor
0.2
635
Tumor
0.2
823
Tumor
0.2
357
Tumor
0.2
375
Tumor
0.2
383
Tumor
0.2
666
Normal
0.2
785
Tumor
0.2
343
Tumor
0.2
137
Tumor
0.2
477
Tumor
0.2
737
Tumor
0.2
447
Tumor
0.1
461
Tumor
0.1
715
Tumor
0.1
493
Tumor
0.1
1015
Tumor
0.1
925
Tumor
0.1
1027
Tumor
0.1
257
Tumor
0.1
777
Tumor
0.1
445
Tumor
0.1
368
Normal
0.1
435
Tumor
0.1
911
Tumor
0.1
571
Tumor
0.1
171
Tumor
0.1
724
Normal
0.1
451
Tumor
0.1
873
Tumor
0.1
915
Tumor
0.1
527
Tumor
0.1
433
Tumor
0.1
361
Tumor
0.1
465
Tumor
0.1
147
Tumor
0.1
553
Tumor
0.0
261
Tumor
0.0
191
Tumor
0.0
615
Tumor
0.0
525
Tumor
0.0
267
Tumor
0.0
125
Tumor
0.0
913
Tumor
0.0
745
Tumor
0.0
648
Normal
0.0
867
Tumor
0.0
567
Tumor
0.0
455
Tumor
0.0
376
Normal
0.0
492
Normal
0.0
515
Tumor
0.0
813
Tumor
0.0
955
Tumor
0.0
981
Tumor
0.0
353
Tumor
0.0
697
Tumor
0.0
713
Tumor
-0.1
636
Normal
-0.1
213
Tumor
-0.1
966
Normal
-0.1
738
Normal
-0.1
365
Tumor
-0.1
917
Tumor
-0.1
488
Normal
-0.1
617
Tumor
-0.1
113
Tumor
-0.1
112
Tumor
-0.1
662
Normal
-0.1
741
Tumor
-0.1
366
Normal
-0.1
395
Tumor
-0.1
358
Normal
-0.1
332
Normal
-0.1
421
Tumor
-0.1
354
Normal
-0.1
314
Normal
-0.1
298
Normal
-0.1
312
Normal
-0.1
127
Tumor
-0.1
778
Normal
-0.1
387
Tumor
-0.1
484
Normal
-0.1
538
Normal
-0.1
558
Normal
-0.1
185
Tumor
-0.1
278
Normal
-0.1
384
Normal
-0.1
744
Normal
-0.1
534
Normal
-0.2
426
Normal
-0.2
557
Tumor
-0.2
362
Normal
-0.2
563
Tumor
-0.2
746
Normal
-0.2
976
Normal
-0.2
568
Normal
-0.2
422
Normal
-0.2
231
Tumor
-0.2
878
Normal
-0.2
258
Normal
-0.2
628
Normal
-0.2
564
Normal
-0.2
217
Tumor
-0.2
187
Tumor
-0.2
858
Normal
-0.2
1042
Normal
-0.2
1028
Normal
-0.2
618
Normal
-0.2
554
Normal
-0.2
434
Normal
-0.2
286
Normal
-0.2
1045
Tumor
-0.2
436
Normal
-0.2
1022
Normal
-0.2
627
Tumor
-0.2
574
Normal
-0.2
814
Normal
-0.2
428
Normal
-0.2
938
Normal
-0.2
756
Normal
-0.2
448
Normal
-0.2
474
Normal
-0.2
498
Normal
-0.2
424
Normal
-0.2
857
Tumor
-0.2
642
Normal
-0.2
922
Normal
-0.2
232
Normal
-0.2
352
Normal
-0.2
414
Normal
-0.2
728
Normal
-0.2
446
Normal
-0.2
1032
Normal
-0.2
984
Normal
-0.2
462
Normal
-0.2
944
Normal
-0.2
212
Normal
-0.2
952
Normal
-0.2
924
Normal
-0.2
327
Tumor
-0.3
874
Normal
-0.3
132
Normal
-0.3
1014
Normal
-0.3
344
Normal
-0.3
968
Normal
-0.3
342
Normal
-0.3
262
Normal
-0.3
432
Normal
-0.3
1026
Normal
-0.3
481
Tumor
-0.3
192
Normal
-0.3
616
Normal
-0.3
482
Normal
-0.3
472
Normal
-0.3
268
Normal
-0.3
494
Normal
-0.3
964
Normal
-0.3
284
Normal
-0.3
135
Tumor
-0.3
136
Normal
-0.3
513
Tumor
-0.3
393
Tumor
-0.3
524
Normal
-0.3
412
Normal
-0.3
526
Normal
-0.3
982
Normal
-0.3
742
Normal
-0.3
572
Normal
-0.3
444
Normal
-0.3
956
Normal
-0.3
686
Normal
-0.3
311
Tumor
-0.3
356
Normal
-0.3
128
Normal
-0.3
145
Tumor
-0.3
466
Normal
-0.3
162
Normal
-0.3
126
Normal
-0.3
478
Normal
-0.3
142
Normal
-0.3
516
Normal
-0.3
514
Normal
-0.3
546
Normal
-0.3
1016
Normal
-0.3
916
Normal
-0.3
464
Normal
-0.3
518
Normal
-0.3
228
Normal
-0.3
172
Normal
-0.3
786
Normal
-0.3
148
Normal
-0.3
818
Normal
-0.3
528
Normal
-0.3
926
Normal
-0.4
954
Normal
-0.4
272
Normal
-0.4
721
Tumor
-0.4
452
Normal
-0.4
573
Tumor
-0.4
114
Normal
-0.4
138
Normal
-0.4
536
Normal
-0.4
111
Normal
-0.4
852
Normal
-0.4
186
Normal
-0.4
415
Tumor
-0.4
882
Normal
-0.4
195
Tumor
-0.4
864
Normal
-0.4
714
Normal
-0.4
698
Normal
-0.4
696
Normal
-0.4
196
Normal
-0.4
391
Tumor
-0.4
188
Normal
-0.4
723
Tumor
-0.4
456
Normal
-0.4
866
Normal
-0.4
416
Normal
-0.4
328
Normal
-0.4
918
Normal
-0.4
124
Normal
-0.4
468
Normal
-0.4
816
Normal
-0.4
862
Normal
-0.4
386
Normal
-0.4
146
Normal
-0.5
824
Normal
-0.5
914
Normal
-0.5
224
Normal
-0.5
222
Normal
-0.5
884
Normal
-0.5
214
Normal
-0.5
392
Normal
-0.5
218
Normal
-0.5
396
Normal
-0.5
364
Normal
-0.5
716
Normal
-0.5
958
Normal
-0.5
978
Normal
-0.6
722
Normal
-0.6
394
Normal
-0.6
1044
Normal
-0.6
868
Normal
-0.6
863
Tumor
-0.6
1046
Normal
-0.7
912
Normal
-0.7
388
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
