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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LMNA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
98.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
467.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
396.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
357.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
295.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
267.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
265.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
265.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
251.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
238.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
238.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
236.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
227.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
220.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
217.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
215.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
215.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
213.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
211.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
210.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
208.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
205.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
204.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
202.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
200.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
194.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
194.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
192.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
188.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
187.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
184.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
183.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
181.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
180.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
180.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
178.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
175.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
175.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
175.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
174.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
174.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
173.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
173.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
171.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
170.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
167.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
166.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
162.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
162.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
160.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
159.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
158.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
158.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
157.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
155.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
153.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
153.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
151.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
147.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
147.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
147.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
145.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
144.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
143.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
143.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
142.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
140.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
137.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
137.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
136.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
136.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
135.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
133.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
133.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
132.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
132.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
132.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
132.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
131.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
130.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
129.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
129.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
128.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
128.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
127.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
126.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
126.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
125.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
125.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
124.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
123.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
122.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
122.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
120.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
120.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
118.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
118.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
117.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
116.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
116.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
116.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
116.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
116.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
115.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
114.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
113.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
113.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
113.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
113.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
112.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
111.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
111.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
110.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
109.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
108.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
108.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
108.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
107.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
106.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
106.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
106.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
106.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
106.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
105.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
105.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
105.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
105.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
104.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
103.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
103.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
103.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
103.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
102.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
102.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
102.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
102.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
102.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
102.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
101.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
101.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
100.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
100.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
100.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
99.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
99.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
98.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
98.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
97.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
96.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
95.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
95.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
95.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
95.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
94.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
94.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
94.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
93.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
93.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
92.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
92.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
92.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
92.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
91.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
91.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
91.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
91.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
91.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
90.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
90.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
90.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
90.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
89.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
89.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
89.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
89.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
89.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
88.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
88.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
88.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
87.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
87.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
87.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
87.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
87.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
86.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
86.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
86.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
85.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
85.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
84.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
83.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
83.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
83.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
83.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
83.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
83.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
82.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
82.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
82.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
81.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
80.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
80.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
80.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
80.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
80.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
80.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
79.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
79.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
79.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
79.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
79.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
78.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
77.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
77.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
76.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
76.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
75.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
75.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
75.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
75.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
74.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
74.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
74.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
74.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
73.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
73.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
73.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
71.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
71.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
71.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
71.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
70.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
69.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
69.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
69.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
69.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
68.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
68.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
68.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
68.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
68.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
67.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
66.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
66.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
66.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
66.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
65.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
65.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
65.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
65.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
65.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
65.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
64.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
64.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
64.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
63.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
63.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
63.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
62.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
61.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
61.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
60.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
60.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
60.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
59.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
58.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
58.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
57.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
57.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
57.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
57.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
57.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
57.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
56.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
56.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
56.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
55.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
55.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
55.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
55.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
53.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
53.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
53.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
53.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
53.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
53.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
53.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
52.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
52.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
52.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
52.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
51.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
51.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
51.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
51.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
51.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
50.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
49.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
49.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
48.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
48.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
47.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
47.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
47.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
47.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
47.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
46.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
46.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
44.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
44.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
44.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
44.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
44.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
44.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
43.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
43.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
43.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
43.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
43.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
43.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
42.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
42.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
41.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
41.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
41.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
40.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
40.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
39.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
39.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
39.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
38.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
38.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
38.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
38.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
36.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
35.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
34.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
34.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
33.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
32.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
31.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
31.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
31.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
31.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
30.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
30.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
28.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
25.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
25.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
25.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
24.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
23.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
23.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
19.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
19.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LMNA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
122.4
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
454.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
419.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
353.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
348.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
310.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
310.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
300.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
282.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
281.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
278.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
273.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
267.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
250.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
244.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
243.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
226.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
225.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
217.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
212.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
210.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
205.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
203.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
200.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
200.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
199.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
193.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
192.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
189.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
188.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
186.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
186.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
180.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
179.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
178.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
177.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
177.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
177.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
172.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
172.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
170.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
169.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
169.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
166.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
164.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
163.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
162.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
160.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
158.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
157.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
157.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
156.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
154.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
152.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
151.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
151.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
150.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
149.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
148.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
148.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
148.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
148.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
147.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
146.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
145.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
145.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
145.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
143.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
142.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
142.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
142.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
141.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
141.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
138.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
138.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
136.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
136.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
135.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
135.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
135.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
134.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
134.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
134.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
133.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
133.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
130.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
129.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
128.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
128.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
127.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
126.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
126.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
126.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
125.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
125.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
125.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
124.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
122.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
122.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
120.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
120.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
119.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
119.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
119.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
118.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
118.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
117.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
114.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
112.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
112.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
112.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
112.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
111.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
110.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
110.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
110.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
109.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
109.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
109.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
108.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
108.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
106.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
105.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
105.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
104.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
104.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
103.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
103.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
103.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
103.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
102.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
102.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
102.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
96.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
96.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
96.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
96.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
95.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
95.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
94.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
94.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
93.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
93.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
93.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
92.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
91.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
91.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
90.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
89.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
89.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
88.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
88.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
88.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
87.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
86.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
85.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
85.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
84.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
83.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
83.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
83.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
83.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
82.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
82.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
82.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
81.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
81.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
81.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
80.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
79.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
77.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
77.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
77.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
76.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
76.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
76.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
75.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
75.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
73.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
73.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
72.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
72.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
71.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
71.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
71.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
69.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
68.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
68.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
67.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
67.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
65.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
65.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
65.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
63.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
62.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
62.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
62.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
62.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
61.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
59.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
59.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
58.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
58.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
58.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
57.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
57.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
56.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
56.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
55.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
55.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
54.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
53.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
52.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
49.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
49.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
46.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
45.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
45.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
44.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
43.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
41.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
40.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
39.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
38.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
37.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
35.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
35.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
33.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
31.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
29.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1031
Tumor
1.2
977
Tumor
1.2
641
Tumor
1.1
427
Tumor
1.0
553
Tumor
1.0
425
Tumor
1.0
383
Tumor
1.0
431
Tumor
1.0
221
Tumor
0.9
471
Tumor
0.9
1021
Tumor
0.9
533
Tumor
0.9
477
Tumor
0.9
975
Tumor
0.9
483
Tumor
0.8
443
Tumor
0.8
135
Tumor
0.8
817
Tumor
0.8
271
Tumor
0.8
1025
Tumor
0.8
415
Tumor
0.7
123
Tumor
0.7
525
Tumor
0.7
921
Tumor
0.7
355
Tumor
0.7
823
Tumor
0.7
283
Tumor
0.7
161
Tumor
0.6
545
Tumor
0.6
925
Tumor
0.6
493
Tumor
0.6
227
Tumor
0.6
185
Tumor
0.5
131
Tumor
0.5
881
Tumor
0.5
777
Tumor
0.5
527
Tumor
0.5
635
Tumor
0.5
473
Tumor
0.5
515
Tumor
0.5
192
Normal
0.4
563
Tumor
0.4
387
Tumor
0.4
513
Tumor
0.4
857
Tumor
0.4
363
Tumor
0.4
917
Tumor
0.4
1041
Tumor
0.4
863
Tumor
0.4
171
Tumor
0.4
647
Tumor
0.4
883
Tumor
0.4
715
Tumor
0.3
685
Tumor
0.3
1013
Tumor
0.3
867
Tumor
0.3
535
Tumor
0.3
478
Normal
0.3
461
Tumor
0.3
191
Tumor
0.3
741
Tumor
0.3
571
Tumor
0.3
957
Tumor
0.3
487
Tumor
0.3
721
Tumor
0.3
538
Normal
0.3
923
Tumor
0.3
913
Tumor
0.2
327
Tumor
0.2
517
Tumor
0.2
112
Tumor
0.2
573
Tumor
0.2
557
Tumor
0.2
497
Tumor
0.2
311
Tumor
0.2
813
Tumor
0.2
444
Normal
0.2
421
Tumor
0.2
147
Tumor
0.2
958
Normal
0.2
433
Tumor
0.2
743
Tumor
0.2
435
Tumor
0.2
492
Normal
0.2
524
Normal
0.2
911
Tumor
0.2
695
Tumor
0.2
536
Normal
0.1
451
Tumor
0.1
447
Tumor
0.1
498
Normal
0.1
413
Tumor
0.1
873
Tumor
0.1
146
Normal
0.1
785
Tumor
0.1
465
Tumor
0.1
744
Normal
0.1
697
Tumor
0.1
737
Tumor
0.1
231
Tumor
0.1
411
Tumor
0.1
865
Tumor
0.1
727
Tumor
0.1
481
Tumor
0.1
1044
Normal
0.1
491
Tumor
0.1
384
Normal
0.1
984
Normal
0.1
516
Normal
0.0
523
Tumor
0.0
713
Tumor
0.0
224
Normal
0.0
445
Tumor
0.0
213
Tumor
0.0
537
Tumor
0.0
954
Normal
0.0
455
Tumor
0.0
567
Tumor
0.0
878
Normal
0.0
1032
Normal
0.0
267
Tumor
0.0
983
Tumor
0.0
916
Normal
0.0
1043
Tumor
0.0
297
Tumor
0.0
982
Normal
0.0
924
Normal
0.0
488
Normal
0.0
423
Tumor
0.0
357
Tumor
0.0
375
Tumor
-0.1
663
Tumor
-0.1
814
Normal
-0.1
672
Normal
-0.1
127
Tumor
-0.1
472
Normal
-0.1
546
Normal
-0.1
716
Normal
-0.1
268
Normal
-0.1
915
Tumor
-0.1
361
Tumor
-0.1
1014
Normal
-0.1
364
Normal
-0.1
572
Normal
-0.1
331
Tumor
-0.1
448
Normal
-0.1
554
Normal
-0.1
1045
Tumor
-0.1
534
Normal
-0.1
686
Normal
-0.1
141
Tumor
-0.1
1015
Tumor
-0.1
494
Normal
-0.1
922
Normal
-0.1
223
Tumor
-0.1
938
Normal
-0.1
412
Normal
-0.1
211
Tumor
-0.1
818
Normal
-0.1
615
Tumor
-0.1
976
Normal
-0.1
217
Tumor
-0.1
852
Normal
-0.1
816
Normal
-0.1
484
Normal
-0.1
746
Normal
-0.1
395
Tumor
-0.1
918
Normal
-0.1
965
Tumor
-0.2
277
Tumor
-0.2
328
Normal
-0.2
558
Normal
-0.2
1028
Normal
-0.2
964
Normal
-0.2
354
Normal
-0.2
474
Normal
-0.2
884
Normal
-0.2
953
Tumor
-0.2
352
Normal
-0.2
617
Tumor
-0.2
1046
Normal
-0.2
344
Normal
-0.2
212
Normal
-0.2
874
Normal
-0.2
332
Normal
-0.2
284
Normal
-0.2
1022
Normal
-0.2
416
Normal
-0.2
514
Normal
-0.2
944
Normal
-0.2
1026
Normal
-0.2
882
Normal
-0.2
228
Normal
-0.2
968
Normal
-0.2
526
Normal
-0.2
187
Tumor
-0.2
636
Normal
-0.2
482
Normal
-0.2
858
Normal
-0.2
937
Tumor
-0.2
722
Normal
-0.2
365
Tumor
-0.2
851
Tumor
-0.2
462
Normal
-0.2
574
Normal
-0.2
868
Normal
-0.2
142
Normal
-0.2
313
Tumor
-0.2
955
Tumor
-0.2
981
Tumor
-0.2
723
Tumor
-0.3
756
Normal
-0.3
386
Normal
-0.3
214
Normal
-0.3
698
Normal
-0.3
1042
Normal
-0.3
376
Normal
-0.3
298
Normal
-0.3
714
Normal
-0.3
137
Tumor
-0.3
742
Normal
-0.3
956
Normal
-0.3
257
Tumor
-0.3
866
Normal
-0.3
314
Normal
-0.3
528
Normal
-0.3
778
Normal
-0.3
912
Normal
-0.3
341
Tumor
-0.3
424
Normal
-0.3
696
Normal
-0.3
824
Normal
-0.3
926
Normal
-0.3
724
Normal
-0.3
312
Normal
-0.3
426
Normal
-0.3
616
Normal
-0.3
124
Normal
-0.3
627
Tumor
-0.3
126
Normal
-0.3
422
Normal
-0.3
1027
Tumor
-0.3
978
Normal
-0.3
446
Normal
-0.3
862
Normal
-0.3
434
Normal
-0.3
618
Normal
-0.3
186
Normal
-0.3
162
Normal
-0.3
738
Normal
-0.3
113
Tumor
-0.3
786
Normal
-0.3
662
Normal
-0.3
342
Normal
-0.3
356
Normal
-0.3
368
Normal
-0.3
188
Normal
-0.3
222
Normal
-0.3
864
Normal
-0.3
388
Normal
-0.3
196
Normal
-0.3
138
Normal
-0.3
966
Normal
-0.4
145
Tumor
-0.4
218
Normal
-0.4
396
Normal
-0.4
392
Normal
-0.4
414
Normal
-0.4
428
Normal
-0.4
665
Tumor
-0.4
232
Normal
-0.4
664
Normal
-0.4
518
Normal
-0.4
148
Normal
-0.4
943
Tumor
-0.4
343
Tumor
-0.4
628
Normal
-0.4
1016
Normal
-0.4
728
Normal
-0.4
172
Normal
-0.4
432
Normal
-0.4
466
Normal
-0.4
642
Normal
-0.4
952
Normal
-0.4
195
Tumor
-0.4
394
Normal
-0.4
278
Normal
-0.4
393
Tumor
-0.4
128
Normal
-0.4
666
Normal
-0.4
463
Tumor
-0.4
272
Normal
-0.4
261
Tumor
-0.4
436
Normal
-0.5
452
Normal
-0.5
963
Tumor
-0.5
877
Tumor
-0.5
467
Tumor
-0.5
111
Normal
-0.5
353
Tumor
-0.5
671
Tumor
-0.5
385
Tumor
-0.5
366
Normal
-0.5
362
Normal
-0.5
568
Normal
-0.5
391
Tumor
-0.5
358
Normal
-0.5
464
Normal
-0.5
564
Normal
-0.5
456
Normal
-0.5
914
Normal
-0.5
286
Normal
-0.5
648
Normal
-0.5
114
Normal
-0.5
132
Normal
-0.5
815
Tumor
-0.5
136
Normal
-0.6
367
Tumor
-0.6
967
Tumor
-0.6
745
Tumor
-0.6
861
Tumor
-0.6
755
Tumor
-0.6
468
Normal
-0.6
262
Normal
-0.6
258
Normal
-0.6
951
Tumor
-0.8
661
Tumor
-0.8
125
Tumor
-0.9
285
Tumor
-0.9
351
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
