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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SHC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
70.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
340.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
308.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
277.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
236.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
212.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
210.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
210.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
207.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
201.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
194.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
192.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
190.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
184.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
184.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
183.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
173.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
172.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
163.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
160.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
159.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
150.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
146.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
143.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
143.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
142.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
138.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
137.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
136.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
133.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
130.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
127.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
126.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
125.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
125.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
124.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
122.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
121.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
120.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
120.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
118.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
116.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
116.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
116.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
115.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
114.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
114.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
114.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
113.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
111.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
110.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
110.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
110.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
109.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
107.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
107.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
106.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
104.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
104.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
104.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
103.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
103.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
102.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
101.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
100.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
100.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
99.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
99.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
98.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
98.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
95.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
94.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
93.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
92.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
92.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
91.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
90.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
90.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
89.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
89.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
88.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
87.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
87.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
87.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
86.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
86.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
85.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
85.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
85.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
84.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
84.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
84.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
84.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
84.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
83.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
83.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
83.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
82.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
82.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
82.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
82.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
82.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
81.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
80.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
79.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
78.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
78.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
76.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
76.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
76.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
76.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
75.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
75.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
75.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
75.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
73.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
73.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
73.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
73.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
73.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
72.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
72.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
72.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
71.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
71.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
71.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
71.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
71.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
70.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
70.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
70.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
69.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
69.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
69.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
68.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
68.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
68.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
68.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
68.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
68.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
68.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
67.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
67.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
67.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
67.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
67.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
67.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
66.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
66.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
66.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
66.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
65.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
65.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
65.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
64.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
63.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
63.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
63.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
63.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
61.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
61.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
61.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
60.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
60.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
60.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
59.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
59.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
59.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
59.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
59.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
58.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
58.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
58.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
58.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
58.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
58.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
58.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
58.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
58.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
58.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
57.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
57.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
57.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
57.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
57.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
57.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
57.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
56.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
56.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
56.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
56.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
56.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
56.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
56.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
56.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
56.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
56.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
56.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
56.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
56.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
55.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
55.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
55.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
55.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
54.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
54.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
54.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
53.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
53.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
53.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
53.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
53.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
53.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
53.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
53.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
52.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
52.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
52.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
52.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
52.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
52.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
52.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
52.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
51.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
51.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
51.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
51.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
51.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
51.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
50.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
49.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
49.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
49.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
49.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
49.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
48.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
48.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
48.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
48.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
48.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
48.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
47.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
47.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
47.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
47.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
46.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
46.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
46.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
46.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
46.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
45.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
45.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
45.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
45.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
45.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
45.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
45.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
45.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
44.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
44.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
44.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
44.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
43.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
43.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
43.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
43.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
42.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
42.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
42.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
42.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
42.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
42.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
41.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
41.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
41.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
41.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
41.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
41.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
41.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
41.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
41.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
41.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
40.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
40.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
40.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
39.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
39.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
39.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
39.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
39.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
38.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
38.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
38.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
38.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
37.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
37.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
37.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
37.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
37.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
36.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
36.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
36.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
36.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
35.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
35.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
35.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
35.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
34.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
34.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
34.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
34.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
33.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
33.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
33.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
32.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
32.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
32.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
32.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
32.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
31.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
31.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
31.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
31.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
30.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
30.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
30.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
30.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
30.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
30.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
30.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
29.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
28.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
28.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
27.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
27.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
27.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
26.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
26.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
26.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
24.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
24.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
20.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
20.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
19.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SHC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
63.3
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
472.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
262.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
254.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
204.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
198.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
186.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
159.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
143.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
139.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
139.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
133.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
133.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
132.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
120.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
118.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
118.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
115.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
114.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
112.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
112.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
112.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
111.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
110.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
108.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
107.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
106.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
105.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
104.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
102.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
97.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
97.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
96.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
94.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
91.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
91.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
91.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
90.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
87.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
87.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
86.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
85.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
85.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
84.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
84.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
82.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
81.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
81.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
80.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
78.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
78.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
77.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
76.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
75.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
75.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
73.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
73.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
73.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
72.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
71.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
71.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
71.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
70.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
69.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
69.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
69.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
69.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
68.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
68.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
68.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
67.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
67.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
67.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
66.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
66.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
66.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
66.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
65.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
65.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
64.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
63.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
63.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
63.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
61.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
61.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
60.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
60.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
60.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
59.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
59.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
59.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
59.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
59.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
59.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
58.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
58.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
58.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
58.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
57.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
57.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
56.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
56.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
56.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
56.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
56.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
56.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
56.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
55.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
55.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
55.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
55.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
55.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
55.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
54.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
53.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
52.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
52.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
52.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
52.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
51.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
51.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
51.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
51.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
51.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
50.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
50.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
50.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
49.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
49.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
49.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
49.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
49.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
49.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
49.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
49.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
48.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
48.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
47.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
46.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
46.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
46.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
46.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
46.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
46.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
45.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
45.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
45.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
44.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
44.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
44.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
44.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
44.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
43.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
43.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
43.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
43.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
42.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
42.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
42.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
42.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
42.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
41.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
41.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
41.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
41.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
40.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
40.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
40.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
40.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
40.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
40.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
39.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
39.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
38.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
38.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
38.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
38.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
37.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
37.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
37.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
37.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
37.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
36.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
36.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
36.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
35.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
35.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
35.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
33.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
33.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
32.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
32.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
32.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
32.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
32.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
30.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
29.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
29.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
29.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
28.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
28.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
28.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
27.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
27.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
26.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
26.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
25.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
383
Tumor
1.8
497
Tumor
1.5
573
Tumor
1.1
977
Tumor
1.1
425
Tumor
1.1
533
Tumor
1.0
435
Tumor
1.0
135
Tumor
0.9
527
Tumor
0.9
171
Tumor
0.9
1021
Tumor
0.9
431
Tumor
0.9
487
Tumor
0.8
813
Tumor
0.8
724
Normal
0.8
721
Tumor
0.8
553
Tumor
0.8
343
Tumor
0.8
161
Tumor
0.8
147
Tumor
0.7
1025
Tumor
0.7
957
Tumor
0.7
545
Tumor
0.7
865
Tumor
0.7
567
Tumor
0.7
823
Tumor
0.7
911
Tumor
0.7
525
Tumor
0.7
1041
Tumor
0.7
191
Tumor
0.7
427
Tumor
0.7
951
Tumor
0.7
975
Tumor
0.6
415
Tumor
0.6
777
Tumor
0.6
271
Tumor
0.6
523
Tumor
0.6
477
Tumor
0.6
663
Tumor
0.6
123
Tumor
0.6
715
Tumor
0.6
915
Tumor
0.5
557
Tumor
0.5
515
Tumor
0.5
925
Tumor
0.5
267
Tumor
0.5
713
Tumor
0.5
493
Tumor
0.5
1027
Tumor
0.5
443
Tumor
0.5
213
Tumor
0.4
665
Tumor
0.4
451
Tumor
0.4
953
Tumor
0.4
393
Tumor
0.4
857
Tumor
0.4
881
Tumor
0.4
867
Tumor
0.4
471
Tumor
0.4
355
Tumor
0.4
1013
Tumor
0.4
697
Tumor
0.4
647
Tumor
0.4
743
Tumor
0.3
473
Tumor
0.3
277
Tumor
0.3
861
Tumor
0.3
537
Tumor
0.3
1031
Tumor
0.3
741
Tumor
0.3
937
Tumor
0.3
327
Tumor
0.3
873
Tumor
0.3
221
Tumor
0.3
883
Tumor
0.3
357
Tumor
0.3
1043
Tumor
0.3
313
Tumor
0.3
814
Normal
0.3
145
Tumor
0.3
125
Tumor
0.2
535
Tumor
0.2
745
Tumor
0.2
491
Tumor
0.2
411
Tumor
0.2
981
Tumor
0.2
963
Tumor
0.2
483
Tumor
0.2
231
Tumor
0.2
447
Tumor
0.2
851
Tumor
0.2
923
Tumor
0.2
737
Tumor
0.2
361
Tumor
0.2
955
Tumor
0.2
257
Tumor
0.1
445
Tumor
0.1
187
Tumor
0.1
965
Tumor
0.1
461
Tumor
0.1
641
Tumor
0.1
755
Tumor
0.1
517
Tumor
0.1
223
Tumor
0.1
635
Tumor
0.1
481
Tumor
0.1
571
Tumor
0.1
943
Tumor
0.1
387
Tumor
0.1
433
Tumor
0.0
341
Tumor
0.0
283
Tumor
0.0
921
Tumor
0.0
297
Tumor
0.0
375
Tumor
0.0
913
Tumor
-0.1
385
Tumor
-0.1
127
Tumor
-0.1
671
Tumor
-0.1
455
Tumor
-0.1
353
Tumor
-0.1
367
Tumor
-0.1
877
Tumor
-0.1
131
Tumor
-0.1
185
Tumor
-0.1
465
Tumor
-0.1
984
Normal
-0.1
141
Tumor
-0.1
113
Tumor
-0.1
384
Normal
-0.1
498
Normal
-0.1
536
Normal
-0.1
227
Tumor
-0.1
112
Tumor
-0.1
727
Tumor
-0.2
488
Normal
-0.2
1044
Normal
-0.2
261
Tumor
-0.2
484
Normal
-0.2
983
Tumor
-0.2
217
Tumor
-0.2
817
Tumor
-0.2
785
Tumor
-0.2
412
Normal
-0.2
978
Normal
-0.2
211
Tumor
-0.2
696
Normal
-0.2
1015
Tumor
-0.2
524
Normal
-0.2
391
Tumor
-0.2
944
Normal
-0.2
448
Normal
-0.2
685
Tumor
-0.2
1028
Normal
-0.2
494
Normal
-0.2
368
Normal
-0.2
482
Normal
-0.2
738
Normal
-0.2
413
Tumor
-0.2
364
Normal
-0.2
1014
Normal
-0.2
513
Tumor
-0.2
786
Normal
-0.2
917
Tumor
-0.3
714
Normal
-0.3
516
Normal
-0.3
395
Tumor
-0.3
1026
Normal
-0.3
918
Normal
-0.3
446
Normal
-0.3
1016
Normal
-0.3
698
Normal
-0.3
756
Normal
-0.3
463
Tumor
-0.3
195
Tumor
-0.3
695
Tumor
-0.3
952
Normal
-0.3
376
Normal
-0.3
363
Tumor
-0.3
554
Normal
-0.3
1032
Normal
-0.3
356
Normal
-0.3
778
Normal
-0.3
526
Normal
-0.3
416
Normal
-0.3
1045
Tumor
-0.3
286
Normal
-0.3
392
Normal
-0.3
982
Normal
-0.3
492
Normal
-0.3
924
Normal
-0.3
1022
Normal
-0.3
228
Normal
-0.3
956
Normal
-0.3
396
Normal
-0.3
746
Normal
-0.3
534
Normal
-0.3
1042
Normal
-0.3
388
Normal
-0.3
474
Normal
-0.3
662
Normal
-0.3
354
Normal
-0.3
968
Normal
-0.3
912
Normal
-0.3
954
Normal
-0.3
514
Normal
-0.3
528
Normal
-0.3
862
Normal
-0.3
212
Normal
-0.3
224
Normal
-0.3
728
Normal
-0.3
672
Normal
-0.4
863
Tumor
-0.4
617
Tumor
-0.4
124
Normal
-0.4
218
Normal
-0.4
742
Normal
-0.4
538
Normal
-0.4
232
Normal
-0.4
312
Normal
-0.4
744
Normal
-0.4
967
Tumor
-0.4
866
Normal
-0.4
874
Normal
-0.4
351
Tumor
-0.4
574
Normal
-0.4
716
Normal
-0.4
478
Normal
-0.4
436
Normal
-0.4
648
Normal
-0.4
563
Tumor
-0.4
352
Normal
-0.4
284
Normal
-0.4
958
Normal
-0.4
1046
Normal
-0.4
518
Normal
-0.4
386
Normal
-0.4
916
Normal
-0.4
664
Normal
-0.4
148
Normal
-0.4
864
Normal
-0.4
858
Normal
-0.4
258
Normal
-0.4
472
Normal
-0.4
434
Normal
-0.4
186
Normal
-0.4
546
Normal
-0.4
188
Normal
-0.4
366
Normal
-0.4
568
Normal
-0.4
976
Normal
-0.4
722
Normal
-0.4
966
Normal
-0.4
262
Normal
-0.4
344
Normal
-0.4
432
Normal
-0.4
642
Normal
-0.4
572
Normal
-0.4
884
Normal
-0.4
824
Normal
-0.4
666
Normal
-0.4
328
Normal
-0.4
914
Normal
-0.4
172
Normal
-0.4
462
Normal
-0.4
421
Tumor
-0.4
162
Normal
-0.4
331
Tumor
-0.4
278
Normal
-0.4
964
Normal
-0.4
365
Tumor
-0.4
723
Tumor
-0.4
464
Normal
-0.4
627
Tumor
-0.4
394
Normal
-0.4
938
Normal
-0.4
686
Normal
-0.4
616
Normal
-0.4
628
Normal
-0.4
467
Tumor
-0.4
926
Normal
-0.4
852
Normal
-0.5
192
Normal
-0.5
818
Normal
-0.5
444
Normal
-0.5
466
Normal
-0.5
878
Normal
-0.5
661
Tumor
-0.5
868
Normal
-0.5
146
Normal
-0.5
132
Normal
-0.5
362
Normal
-0.5
114
Normal
-0.5
285
Tumor
-0.5
922
Normal
-0.5
128
Normal
-0.5
342
Normal
-0.5
142
Normal
-0.5
358
Normal
-0.5
196
Normal
-0.5
137
Tumor
-0.5
426
Normal
-0.5
423
Tumor
-0.5
468
Normal
-0.5
882
Normal
-0.5
268
Normal
-0.5
272
Normal
-0.5
816
Normal
-0.5
126
Normal
-0.5
136
Normal
-0.5
314
Normal
-0.5
558
Normal
-0.5
422
Normal
-0.5
615
Tumor
-0.5
111
Normal
-0.5
452
Normal
-0.6
456
Normal
-0.6
564
Normal
-0.6
138
Normal
-0.6
618
Normal
-0.6
214
Normal
-0.6
424
Normal
-0.7
298
Normal
-0.7
222
Normal
-0.7
636
Normal
-0.7
332
Normal
-0.7
414
Normal
-0.7
428
Normal
-0.8
311
Tumor
-0.8
815
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
