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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ST6GALNAC6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
51.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
51.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
50.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
50.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
44.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
43.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
42.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
42.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
41.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
41.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
40.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
39.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
39.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
39.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
38.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
38.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
38.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
38.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
37.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
37.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
36.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
36.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
36.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
36.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
35.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
35.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
34.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
34.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
34.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
34.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
34.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
33.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
33.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
33.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
33.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
32.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
32.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
32.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
32.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
32.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
31.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
31.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
31.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
31.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
31.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
31.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
31.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
30.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
29.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
29.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
29.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
29.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
29.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
28.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
28.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
28.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
27.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
27.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
27.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
27.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
27.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
27.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
27.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
27.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
26.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
24.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
24.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
24.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
24.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
24.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
24.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
22.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
22.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
22.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
21.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
21.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
21.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
21.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
20.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
20.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
20.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
17.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
16.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
15.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
11.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ST6GALNAC6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.0
Number of samples
231
Samples
Sample
Description
TPM
DO45217
0 years, female, NA, stage:3, dead, 270 days
67.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
59.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
53.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
47.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
47.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
41.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
39.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
39.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
37.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
35.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
33.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
33.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
32.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
30.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
30.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
30.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
30.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
29.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
29.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
29.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
29.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
28.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
28.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
28.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
27.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
26.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
26.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
26.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
26.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
25.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
25.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
25.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
24.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
23.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
20.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
18.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
937
Tumor
1.7
1041
Tumor
1.5
636
Normal
1.2
954
Normal
1.2
642
Normal
1.2
944
Normal
1.1
1016
Normal
1.1
981
Tumor
1.0
435
Tumor
1.0
391
Tumor
1.0
662
Normal
0.9
618
Normal
0.9
672
Normal
0.9
1014
Normal
0.9
616
Normal
0.9
628
Normal
0.8
956
Normal
0.8
664
Normal
0.8
955
Tumor
0.8
938
Normal
0.8
392
Normal
0.8
666
Normal
0.7
648
Normal
0.7
818
Normal
0.7
817
Tumor
0.7
978
Normal
0.7
1028
Normal
0.7
394
Normal
0.7
952
Normal
0.7
1032
Normal
0.6
984
Normal
0.6
112
Tumor
0.6
1022
Normal
0.6
1026
Normal
0.6
388
Normal
0.6
823
Tumor
0.6
852
Normal
0.5
1042
Normal
0.5
857
Tumor
0.5
452
Normal
0.5
915
Tumor
0.5
1015
Tumor
0.5
816
Normal
0.5
982
Normal
0.5
396
Normal
0.5
983
Tumor
0.5
123
Tumor
0.4
696
Normal
0.4
695
Tumor
0.4
922
Normal
0.3
778
Normal
0.3
444
Normal
0.3
1027
Tumor
0.3
432
Normal
0.3
464
Normal
0.3
926
Normal
0.3
1046
Normal
0.3
977
Tumor
0.3
465
Tumor
0.2
918
Normal
0.2
1021
Tumor
0.2
436
Normal
0.2
665
Tumor
0.2
446
Normal
0.2
124
Normal
0.2
386
Normal
0.2
722
Normal
0.2
434
Normal
0.2
433
Tumor
0.2
431
Tumor
0.2
924
Normal
0.2
114
Normal
0.2
468
Normal
0.2
698
Normal
0.1
456
Normal
0.1
342
Normal
0.1
427
Tumor
0.1
463
Tumor
0.1
111
Normal
0.1
451
Tumor
0.1
951
Tumor
0.1
113
Tumor
0.1
686
Normal
0.1
128
Normal
0.1
466
Normal
0.1
716
Normal
0.1
858
Normal
0.0
127
Tumor
0.0
1031
Tumor
0.0
824
Normal
0.0
785
Tumor
0.0
715
Tumor
0.0
422
Normal
0.0
1044
Normal
-0.1
815
Tumor
-0.1
647
Tumor
-0.1
916
Normal
-0.1
755
Tumor
-0.1
685
Tumor
-0.1
357
Tumor
-0.1
777
Tumor
-0.1
671
Tumor
-0.1
1043
Tumor
-0.1
343
Tumor
-0.1
424
Normal
-0.1
358
Normal
-0.1
714
Normal
-0.1
353
Tumor
-0.2
448
Normal
-0.2
126
Normal
-0.2
393
Tumor
-0.2
641
Tumor
-0.2
455
Tumor
-0.2
663
Tumor
-0.2
746
Normal
-0.2
1013
Tumor
-0.3
1025
Tumor
-0.3
925
Tumor
-0.3
721
Tumor
-0.3
1045
Tumor
-0.3
635
Tumor
-0.3
786
Normal
-0.3
428
Normal
-0.3
943
Tumor
-0.4
423
Tumor
-0.4
713
Tumor
-0.4
627
Tumor
-0.4
421
Tumor
-0.4
387
Tumor
-0.4
351
Tumor
-0.4
467
Tumor
-0.4
617
Tumor
-0.4
426
Normal
-0.4
661
Tumor
-0.4
354
Normal
-0.4
447
Tumor
-0.4
756
Normal
-0.4
923
Tumor
-0.5
851
Tumor
-0.5
385
Tumor
-0.5
615
Tumor
-0.5
536
Normal
-0.5
917
Tumor
-0.5
413
Tumor
-0.7
814
Normal
-0.7
352
Normal
-0.7
445
Tumor
-0.7
344
Normal
-0.7
535
Tumor
-0.8
341
Tumor
-0.8
953
Tumor
-0.8
443
Tumor
-0.8
745
Tumor
-0.8
125
Tumor
-0.8
921
Tumor
-0.8
414
Normal
-0.9
425
Tumor
-0.9
813
Tumor
-1.0
395
Tumor
-1.1
697
Tumor
-1.2
471
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
473
Tumor
N/A
232
Normal
N/A
474
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
487
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
368
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
957
Tumor
N/A
958
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
963
Tumor
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
861
Tumor
N/A
741
Tumor
N/A
862
Normal
N/A
742
Normal
N/A
863
Tumor
N/A
743
Tumor
N/A
864
Normal
N/A
744
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
527
Tumor
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
534
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
545
Tumor
N/A
546
Normal
N/A
311
Tumor
N/A
553
Tumor
N/A
312
Normal
N/A
554
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
212
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
223
Tumor
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
