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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
U2AF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
171.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
151.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
145.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
137.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
112.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
107.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
101.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
99.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
98.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
97.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
97.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
95.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
95.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
94.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
91.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
91.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
90.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
89.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
87.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
86.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
85.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
84.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
82.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
81.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
76.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
75.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
74.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
74.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
72.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
72.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
72.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
71.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
71.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
71.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
70.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
70.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
70.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
70.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
68.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
68.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
68.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
67.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
67.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
66.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
66.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
65.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
63.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
63.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
63.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
63.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
62.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
62.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
61.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
61.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
61.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
60.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
59.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
59.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
59.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
59.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
59.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
58.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
58.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
57.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
57.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
57.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
57.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
57.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
57.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
57.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
56.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
56.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
56.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
55.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
54.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
54.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
54.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
53.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
53.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
53.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
53.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
53.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
52.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
52.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
52.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
51.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
51.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
51.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
50.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
50.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
49.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
48.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
47.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
47.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
46.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
46.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
45.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
45.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
44.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
44.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
44.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
44.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
44.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
43.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
43.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
43.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
43.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
42.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
42.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
42.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
42.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
42.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
42.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
42.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
41.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
41.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
41.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
41.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
41.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
41.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
40.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
40.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
40.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
40.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
39.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
39.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
39.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
39.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
38.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
38.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
37.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
37.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
37.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
37.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
37.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
37.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
37.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
37.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
37.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
37.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
36.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
36.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
36.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
36.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
36.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
36.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
36.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
36.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
36.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
35.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
35.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
35.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
35.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
35.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
35.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
35.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
34.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
34.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
34.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
33.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
33.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
33.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
33.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
33.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
33.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
33.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
32.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
32.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
32.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
31.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
30.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
30.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
30.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
30.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
29.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
29.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
29.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
28.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
28.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
28.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
28.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
28.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
28.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
27.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
25.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
25.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
25.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
24.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
23.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
23.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
21.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
21.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
21.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
20.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
20.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
20.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
20.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
19.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
19.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
16.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
U2AF1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
55.1
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
143.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
130.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
128.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
123.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
121.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
120.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
115.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
114.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
107.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
104.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
104.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
103.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
101.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
99.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
95.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
93.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
92.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
92.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
90.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
89.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
89.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
87.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
87.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
86.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
86.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
85.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
84.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
83.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
83.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
82.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
82.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
82.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
79.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
79.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
78.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
78.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
76.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
74.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
73.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
72.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
71.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
71.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
71.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
71.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
71.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
70.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
70.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
69.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
69.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
68.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
68.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
68.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
67.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
67.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
66.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
66.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
65.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
65.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
65.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
64.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
64.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
64.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
63.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
63.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
63.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
63.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
62.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
62.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
62.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
61.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
61.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
61.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
60.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
60.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
59.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
59.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
58.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
58.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
58.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
58.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
57.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
57.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
57.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
57.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
57.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
56.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
56.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
55.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
55.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
55.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
55.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
55.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
55.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
54.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
54.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
53.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
53.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
53.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
53.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
53.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
52.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
52.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
52.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
52.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
51.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
51.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
51.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
50.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
50.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
50.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
50.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
50.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
50.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
49.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
49.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
49.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
49.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
49.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
49.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
49.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
48.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
48.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
48.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
48.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
47.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
47.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
47.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
47.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
47.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
47.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
47.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
47.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
46.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
46.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
46.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
46.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
46.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
46.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
46.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
45.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
45.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
45.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
45.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
44.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
44.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
44.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
44.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
44.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
44.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
43.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
43.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
42.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
42.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
42.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
42.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
42.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
42.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
42.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
42.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
42.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
42.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
41.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
41.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
41.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
41.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
40.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
40.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
40.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
40.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
40.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
40.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
39.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
39.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
39.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
38.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
38.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
38.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
38.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
38.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
38.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
38.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
37.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
37.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
37.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
37.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
37.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
37.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
37.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
37.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
36.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
36.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
36.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
36.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
36.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
35.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
35.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
34.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
34.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
34.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
33.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
33.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
32.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
31.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
31.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
30.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
30.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
30.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
30.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
30.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
30.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
29.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
29.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
28.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
28.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
27.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
25.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
23.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
1.4
743
Tumor
1.0
965
Tumor
0.9
951
Tumor
0.9
497
Tumor
0.9
131
Tumor
0.9
285
Tumor
0.8
425
Tumor
0.8
367
Tumor
0.8
331
Tumor
0.8
112
Tumor
0.7
351
Tumor
0.7
967
Tumor
0.7
957
Tumor
0.6
413
Tumor
0.6
865
Tumor
0.6
663
Tumor
0.6
161
Tumor
0.6
1021
Tumor
0.6
385
Tumor
0.6
123
Tumor
0.6
737
Tumor
0.6
355
Tumor
0.6
647
Tumor
0.6
983
Tumor
0.5
411
Tumor
0.5
695
Tumor
0.5
443
Tumor
0.5
525
Tumor
0.5
977
Tumor
0.5
523
Tumor
0.5
937
Tumor
0.5
817
Tumor
0.5
1013
Tumor
0.5
343
Tumor
0.5
815
Tumor
0.5
431
Tumor
0.5
427
Tumor
0.5
1025
Tumor
0.4
921
Tumor
0.4
877
Tumor
0.4
277
Tumor
0.4
313
Tumor
0.4
211
Tumor
0.4
671
Tumor
0.4
515
Tumor
0.4
221
Tumor
0.4
463
Tumor
0.4
493
Tumor
0.4
685
Tumor
0.4
451
Tumor
0.4
455
Tumor
0.4
213
Tumor
0.4
567
Tumor
0.4
135
Tumor
0.4
357
Tumor
0.4
297
Tumor
0.4
1031
Tumor
0.4
727
Tumor
0.4
283
Tumor
0.4
545
Tumor
0.4
517
Tumor
0.4
537
Tumor
0.3
375
Tumor
0.3
433
Tumor
0.3
975
Tumor
0.3
571
Tumor
0.3
535
Tumor
0.3
527
Tumor
0.3
491
Tumor
0.3
171
Tumor
0.3
465
Tumor
0.3
635
Tumor
0.3
477
Tumor
0.3
473
Tumor
0.3
395
Tumor
0.3
185
Tumor
0.3
267
Tumor
0.3
141
Tumor
0.3
383
Tumor
0.3
697
Tumor
0.3
467
Tumor
0.3
471
Tumor
0.3
341
Tumor
0.3
387
Tumor
0.3
271
Tumor
0.3
125
Tumor
0.2
113
Tumor
0.2
881
Tumor
0.2
665
Tumor
0.2
461
Tumor
0.2
445
Tumor
0.2
435
Tumor
0.2
391
Tumor
0.2
393
Tumor
0.2
923
Tumor
0.2
533
Tumor
0.2
447
Tumor
0.2
573
Tumor
0.2
963
Tumor
0.2
557
Tumor
0.2
217
Tumor
0.2
883
Tumor
0.2
363
Tumor
0.2
755
Tumor
0.2
823
Tumor
0.2
483
Tumor
0.2
861
Tumor
0.2
261
Tumor
0.2
1027
Tumor
0.2
813
Tumor
0.1
553
Tumor
0.1
777
Tumor
0.1
1041
Tumor
0.1
785
Tumor
0.1
423
Tumor
0.1
851
Tumor
0.1
724
Normal
0.1
943
Tumor
0.1
311
Tumor
0.1
365
Tumor
0.1
513
Tumor
0.1
487
Tumor
0.1
1045
Tumor
0.1
715
Tumor
0.1
925
Tumor
0.1
137
Tumor
0.1
434
Normal
0.1
147
Tumor
0.1
1015
Tumor
0.0
1043
Tumor
0.0
741
Tumor
0.0
187
Tumor
0.0
744
Normal
0.0
953
Tumor
0.0
257
Tumor
0.0
368
Normal
0.0
911
Tumor
0.0
915
Tumor
0.0
917
Tumor
0.0
745
Tumor
0.0
227
Tumor
0.0
913
Tumor
0.0
124
Normal
0.0
223
Tumor
0.0
981
Tumor
0.0
361
Tumor
0.0
421
Tumor
-0.1
188
Normal
-0.1
536
Normal
-0.1
231
Tumor
-0.1
554
Normal
-0.1
814
Normal
-0.1
867
Tumor
-0.1
394
Normal
-0.1
456
Normal
-0.1
186
Normal
-0.1
386
Normal
-0.1
162
Normal
-0.1
538
Normal
-0.1
127
Tumor
-0.1
641
Tumor
-0.1
396
Normal
-0.1
353
Tumor
-0.1
145
Tumor
-0.1
615
Tumor
-0.1
327
Tumor
-0.1
195
Tumor
-0.1
142
Normal
-0.1
376
Normal
-0.1
873
Tumor
-0.1
415
Tumor
-0.1
468
Normal
-0.1
114
Normal
-0.1
146
Normal
-0.1
136
Normal
-0.2
352
Normal
-0.2
966
Normal
-0.2
172
Normal
-0.2
138
Normal
-0.2
344
Normal
-0.2
524
Normal
-0.2
713
Tumor
-0.2
148
Normal
-0.2
464
Normal
-0.2
446
Normal
-0.2
1028
Normal
-0.2
392
Normal
-0.2
111
Normal
-0.2
452
Normal
-0.2
362
Normal
-0.2
342
Normal
-0.2
563
Tumor
-0.2
518
Normal
-0.2
617
Tumor
-0.2
426
Normal
-0.2
388
Normal
-0.2
857
Tumor
-0.2
955
Tumor
-0.2
278
Normal
-0.2
298
Normal
-0.2
627
Tumor
-0.2
952
Normal
-0.2
436
Normal
-0.2
492
Normal
-0.3
228
Normal
-0.3
214
Normal
-0.3
698
Normal
-0.3
132
Normal
-0.3
128
Normal
-0.3
412
Normal
-0.3
218
Normal
-0.3
268
Normal
-0.3
366
Normal
-0.3
924
Normal
-0.3
662
Normal
-0.3
448
Normal
-0.3
481
Tumor
-0.3
746
Normal
-0.3
312
Normal
-0.3
466
Normal
-0.3
664
Normal
-0.3
721
Tumor
-0.3
192
Normal
-0.3
964
Normal
-0.3
358
Normal
-0.3
1026
Normal
-0.3
474
Normal
-0.3
728
Normal
-0.3
968
Normal
-0.3
126
Normal
-0.3
222
Normal
-0.3
444
Normal
-0.3
723
Tumor
-0.3
686
Normal
-0.3
332
Normal
-0.3
272
Normal
-0.3
472
Normal
-0.3
384
Normal
-0.3
738
Normal
-0.3
938
Normal
-0.3
262
Normal
-0.3
878
Normal
-0.3
516
Normal
-0.3
696
Normal
-0.4
574
Normal
-0.4
191
Tumor
-0.4
976
Normal
-0.4
922
Normal
-0.4
778
Normal
-0.4
742
Normal
-0.4
916
Normal
-0.4
526
Normal
-0.4
258
Normal
-0.4
648
Normal
-0.4
422
Normal
-0.4
432
Normal
-0.4
462
Normal
-0.4
212
Normal
-0.4
1016
Normal
-0.4
286
Normal
-0.4
416
Normal
-0.4
478
Normal
-0.4
618
Normal
-0.4
666
Normal
-0.4
546
Normal
-0.4
1014
Normal
-0.4
232
Normal
-0.4
918
Normal
-0.4
328
Normal
-0.4
356
Normal
-0.4
944
Normal
-0.4
196
Normal
-0.4
1022
Normal
-0.4
954
Normal
-0.5
314
Normal
-0.5
414
Normal
-0.5
958
Normal
-0.5
568
Normal
-0.5
224
Normal
-0.5
534
Normal
-0.5
628
Normal
-0.5
714
Normal
-0.5
716
Normal
-0.5
488
Normal
-0.5
984
Normal
-0.5
428
Normal
-0.5
816
Normal
-0.5
1032
Normal
-0.5
498
Normal
-0.5
1042
Normal
-0.5
874
Normal
-0.5
528
Normal
-0.5
558
Normal
-0.5
722
Normal
-0.5
484
Normal
-0.5
982
Normal
-0.5
956
Normal
-0.5
914
Normal
-0.5
672
Normal
-0.5
642
Normal
-0.5
1044
Normal
-0.6
364
Normal
-0.6
636
Normal
-0.6
424
Normal
-0.6
354
Normal
-0.6
572
Normal
-0.6
926
Normal
-0.6
863
Tumor
-0.6
284
Normal
-0.6
858
Normal
-0.6
564
Normal
-0.6
852
Normal
-0.6
494
Normal
-0.7
864
Normal
-0.7
482
Normal
-0.7
978
Normal
-0.7
824
Normal
-0.7
868
Normal
-0.7
1046
Normal
-0.7
866
Normal
-0.7
862
Normal
-0.8
756
Normal
-0.8
616
Normal
-0.8
514
Normal
-0.8
882
Normal
-0.8
786
Normal
-0.9
818
Normal
-0.9
884
Normal
-1.1
912
Normal
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
