We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMB4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
372.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2339.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1050.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1015.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
944.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
858.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
830.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
821.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
818.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
810.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
783.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
774.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
754.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
713.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
690.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
684.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
681.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
680.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
675.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
673.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
665.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
651.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
611.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
604.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
603.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
598.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
597.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
592.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
591.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
586.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
584.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
574.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
573.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
557.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
544.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
541.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
539.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
538.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
534.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
534.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
533.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
531.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
531.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
529.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
524.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
522.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
522.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
521.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
521.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
521.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
520.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
520.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
519.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
518.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
511.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
506.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
503.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
502.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
501.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
501.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
498.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
498.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
496.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
495.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
495.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
494.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
493.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
488.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
480.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
476.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
475.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
474.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
469.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
465.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
465.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
462.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
459.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
457.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
456.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
455.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
455.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
454.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
451.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
451.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
450.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
449.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
449.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
449.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
448.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
446.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
438.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
437.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
436.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
436.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
435.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
435.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
433.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
431.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
431.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
430.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
427.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
425.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
420.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
417.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
415.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
415.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
413.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
413.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
411.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
411.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
411.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
410.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
409.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
409.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
406.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
405.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
404.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
404.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
403.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
402.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
402.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
401.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
399.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
398.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
397.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
394.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
393.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
391.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
388.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
385.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
385.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
382.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
382.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
382.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
381.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
380.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
379.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
378.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
378.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
378.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
377.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
376.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
376.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
376.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
374.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
373.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
373.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
372.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
371.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
371.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
370.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
370.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
369.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
368.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
366.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
366.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
365.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
365.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
365.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
364.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
361.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
357.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
357.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
357.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
356.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
356.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
354.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
354.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
354.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
353.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
353.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
353.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
352.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
352.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
352.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
351.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
351.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
351.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
351.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
350.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
350.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
349.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
349.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
348.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
348.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
347.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
346.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
346.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
345.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
345.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
345.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
345.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
345.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
341.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
340.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
340.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
339.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
337.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
337.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
336.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
333.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
332.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
331.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
331.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
330.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
327.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
326.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
324.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
323.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
322.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
321.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
321.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
320.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
316.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
315.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
315.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
314.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
311.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
311.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
310.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
309.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
308.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
308.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
308.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
308.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
306.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
306.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
305.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
302.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
298.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
298.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
295.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
294.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
294.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
293.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
290.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
290.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
289.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
288.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
288.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
287.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
286.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
286.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
285.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
285.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
284.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
284.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
282.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
281.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
281.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
281.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
281.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
279.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
277.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
276.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
273.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
273.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
269.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
269.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
268.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
268.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
268.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
267.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
267.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
266.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
266.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
266.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
265.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
264.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
263.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
262.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
262.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
261.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
260.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
260.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
259.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
259.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
258.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
258.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
258.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
257.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
257.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
256.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
256.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
255.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
254.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
254.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
252.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
251.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
251.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
249.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
248.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
242.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
241.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
241.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
239.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
237.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
237.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
235.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
235.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
235.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
233.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
233.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
232.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
231.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
231.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
227.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
225.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
223.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
222.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
220.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
218.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
217.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
215.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
214.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
212.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
210.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
210.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
209.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
207.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
207.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
207.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
206.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
206.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
202.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
198.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
197.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
197.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
197.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
195.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
194.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
193.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
193.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
191.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
191.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
191.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
189.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
187.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
186.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
185.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
185.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
184.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
182.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
182.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
178.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
176.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
175.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
173.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
172.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
170.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
169.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
166.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
166.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
166.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
164.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
159.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
159.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
157.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
152.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
151.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
142.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
142.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMB4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
286.4
Number of samples
231
Samples
Sample
Description
TPM
DO50791
0 years, female, NA, stage:1, dead, 480 days
891.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
737.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
722.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
710.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
673.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
629.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
608.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
585.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
570.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
566.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
530.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
521.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
495.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
489.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
486.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
477.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
471.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
469.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
456.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
451.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
449.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
448.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
432.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
431.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
430.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
430.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
430.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
429.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
427.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
425.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
420.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
419.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
418.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
418.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
415.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
412.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
411.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
410.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
405.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
403.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
403.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
402.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
400.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
400.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
397.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
396.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
392.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
381.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
381.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
372.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
369.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
359.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
356.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
350.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
343.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
342.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
340.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
339.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
337.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
335.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
334.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
332.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
327.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
327.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
323.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
321.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
319.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
318.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
314.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
312.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
310.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
310.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
310.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
309.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
306.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
306.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
304.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
304.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
303.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
302.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
301.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
300.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
300.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
299.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
299.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
298.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
297.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
296.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
293.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
292.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
291.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
291.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
290.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
289.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
289.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
287.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
285.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
285.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
284.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
283.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
282.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
280.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
279.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
278.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
278.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
278.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
271.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
268.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
266.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
265.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
264.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
263.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
261.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
259.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
259.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
259.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
259.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
257.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
255.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
254.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
253.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
252.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
250.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
249.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
248.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
247.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
245.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
245.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
245.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
243.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
242.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
240.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
240.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
239.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
238.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
238.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
235.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
234.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
234.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
232.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
229.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
229.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
228.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
227.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
226.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
226.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
226.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
225.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
224.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
222.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
221.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
219.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
218.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
217.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
216.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
216.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
216.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
216.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
214.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
213.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
213.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
213.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
213.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
210.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
209.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
208.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
208.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
207.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
206.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
204.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
204.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
203.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
202.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
202.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
199.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
198.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
198.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
197.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
197.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
197.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
197.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
196.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
196.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
196.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
195.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
192.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
192.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
190.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
190.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
189.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
185.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
184.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
184.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
183.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
180.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
179.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
177.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
176.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
175.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
173.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
173.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
167.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
164.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
164.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
164.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
160.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
159.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
155.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
155.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
154.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
152.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
134.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
130.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
130.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
129.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
126.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
125.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
124.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
124.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
122.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
116.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
116.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
116.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
115.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
115.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
115.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
110.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
107.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
104.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
98.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
85.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
436
Normal
0.6
432
Normal
0.6
723
Tumor
0.5
456
Normal
0.5
824
Normal
0.5
414
Normal
0.5
314
Normal
0.5
698
Normal
0.4
298
Normal
0.4
738
Normal
0.4
818
Normal
0.4
742
Normal
0.4
327
Tumor
0.4
278
Normal
0.4
514
Normal
0.4
666
Normal
0.4
1026
Normal
0.4
714
Normal
0.4
428
Normal
0.3
128
Normal
0.3
148
Normal
0.3
618
Normal
0.3
616
Normal
0.3
416
Normal
0.3
534
Normal
0.3
858
Normal
0.3
424
Normal
0.3
926
Normal
0.3
482
Normal
0.3
756
Normal
0.3
426
Normal
0.3
353
Tumor
0.3
564
Normal
0.3
914
Normal
0.3
777
Tumor
0.3
114
Normal
0.3
132
Normal
0.3
728
Normal
0.3
952
Normal
0.3
912
Normal
0.3
944
Normal
0.3
864
Normal
0.3
422
Normal
0.3
186
Normal
0.3
978
Normal
0.3
513
Tumor
0.3
232
Normal
0.3
196
Normal
0.3
354
Normal
0.3
332
Normal
0.3
188
Normal
0.3
1022
Normal
0.3
111
Normal
0.3
955
Tumor
0.3
964
Normal
0.3
222
Normal
0.3
126
Normal
0.3
218
Normal
0.3
648
Normal
0.3
272
Normal
0.3
258
Normal
0.3
362
Normal
0.3
568
Normal
0.3
262
Normal
0.3
662
Normal
0.3
172
Normal
0.3
574
Normal
0.3
446
Normal
0.3
466
Normal
0.3
286
Normal
0.3
342
Normal
0.3
388
Normal
0.3
356
Normal
0.3
452
Normal
0.3
376
Normal
0.3
615
Tumor
0.3
1046
Normal
0.3
394
Normal
0.3
786
Normal
0.2
434
Normal
0.2
868
Normal
0.2
862
Normal
0.2
866
Normal
0.2
716
Normal
0.2
1042
Normal
0.2
423
Tumor
0.2
162
Normal
0.2
464
Normal
0.2
364
Normal
0.2
966
Normal
0.2
882
Normal
0.2
412
Normal
0.2
546
Normal
0.2
628
Normal
0.2
386
Normal
0.2
228
Normal
0.2
136
Normal
0.2
448
Normal
0.2
642
Normal
0.2
663
Tumor
0.2
1044
Normal
0.2
472
Normal
0.2
1016
Normal
0.2
664
Normal
0.2
468
Normal
0.2
884
Normal
0.2
558
Normal
0.2
328
Normal
0.2
918
Normal
0.2
313
Tumor
0.2
554
Normal
0.2
528
Normal
0.2
462
Normal
0.2
358
Normal
0.2
627
Tumor
0.2
982
Normal
0.2
366
Normal
0.2
312
Normal
0.2
722
Normal
0.2
746
Normal
0.2
214
Normal
0.2
958
Normal
0.2
478
Normal
0.1
956
Normal
0.1
411
Tumor
0.1
938
Normal
0.1
1014
Normal
0.1
635
Tumor
0.1
392
Normal
0.1
526
Normal
0.1
396
Normal
0.1
284
Normal
0.1
744
Normal
0.1
146
Normal
0.1
516
Normal
0.1
976
Normal
0.1
778
Normal
0.1
922
Normal
0.1
852
Normal
0.1
484
Normal
0.1
113
Tumor
0.1
878
Normal
0.1
617
Tumor
0.1
741
Tumor
0.1
572
Normal
0.1
636
Normal
0.1
444
Normal
0.1
138
Normal
0.1
217
Tumor
0.1
724
Normal
0.1
863
Tumor
0.1
147
Tumor
0.1
142
Normal
0.1
124
Normal
0.1
874
Normal
0.1
1032
Normal
0.1
755
Tumor
0.1
867
Tumor
0.1
968
Normal
0.1
344
Normal
0.1
488
Normal
0.1
494
Normal
0.1
573
Tumor
0.1
727
Tumor
0.1
212
Normal
0.1
924
Normal
0.1
224
Normal
0.1
1015
Tumor
0.0
431
Tumor
0.0
352
Normal
0.0
957
Tumor
0.0
223
Tumor
0.0
981
Tumor
0.0
954
Normal
0.0
672
Normal
0.0
696
Normal
0.0
518
Normal
0.0
953
Tumor
0.0
127
Tumor
0.0
816
Normal
0.0
461
Tumor
0.0
384
Normal
0.0
445
Tumor
0.0
1028
Normal
0.0
268
Normal
0.0
686
Normal
0.0
415
Tumor
0.0
745
Tumor
0.0
192
Normal
0.0
515
Tumor
0.0
368
Normal
0.0
474
Normal
0.0
721
Tumor
0.0
277
Tumor
0.0
984
Normal
0.0
1013
Tumor
0.0
538
Normal
0.0
451
Tumor
0.0
925
Tumor
0.0
261
Tumor
0.0
873
Tumor
0.0
311
Tumor
-0.1
524
Normal
-0.1
481
Tumor
-0.1
1045
Tumor
-0.1
195
Tumor
-0.1
1027
Tumor
-0.1
861
Tumor
-0.1
467
Tumor
-0.1
387
Tumor
-0.1
435
Tumor
-0.1
365
Tumor
-0.1
477
Tumor
-0.1
533
Tumor
-0.1
857
Tumor
-0.1
563
Tumor
-0.1
695
Tumor
-0.1
665
Tumor
-0.1
161
Tumor
-0.1
413
Tumor
-0.1
227
Tumor
-0.1
737
Tumor
-0.1
145
Tumor
-0.1
443
Tumor
-0.1
112
Tumor
-0.1
851
Tumor
-0.1
361
Tumor
-0.1
187
Tumor
-0.1
355
Tumor
-0.1
525
Tumor
-0.1
913
Tumor
-0.1
455
Tumor
-0.2
185
Tumor
-0.2
536
Normal
-0.2
141
Tumor
-0.2
661
Tumor
-0.2
433
Tumor
-0.2
1043
Tumor
-0.2
257
Tumor
-0.2
363
Tumor
-0.2
131
Tumor
-0.2
1021
Tumor
-0.2
393
Tumor
-0.2
814
Normal
-0.2
715
Tumor
-0.2
647
Tumor
-0.2
553
Tumor
-0.2
123
Tumor
-0.2
498
Normal
-0.2
213
Tumor
-0.2
191
Tumor
-0.2
865
Tumor
-0.2
911
Tumor
-0.2
977
Tumor
-0.2
785
Tumor
-0.2
427
Tumor
-0.2
492
Normal
-0.2
916
Normal
-0.2
557
Tumor
-0.2
1031
Tumor
-0.2
135
Tumor
-0.2
567
Tumor
-0.2
421
Tumor
-0.2
341
Tumor
-0.2
383
Tumor
-0.2
271
Tumor
-0.2
125
Tumor
-0.3
465
Tumor
-0.3
523
Tumor
-0.3
1025
Tumor
-0.3
137
Tumor
-0.3
537
Tumor
-0.3
823
Tumor
-0.3
571
Tumor
-0.3
915
Tumor
-0.3
267
Tumor
-0.3
221
Tumor
-0.3
385
Tumor
-0.3
951
Tumor
-0.3
917
Tumor
-0.3
923
Tumor
-0.3
351
Tumor
-0.3
357
Tumor
-0.3
447
Tumor
-0.3
713
Tumor
-0.3
493
Tumor
-0.3
425
Tumor
-0.3
487
Tumor
-0.3
527
Tumor
-0.3
391
Tumor
-0.3
517
Tumor
-0.3
963
Tumor
-0.3
375
Tumor
-0.3
641
Tumor
-0.4
171
Tumor
-0.4
813
Tumor
-0.4
471
Tumor
-0.4
483
Tumor
-0.4
671
Tumor
-0.4
211
Tumor
-0.4
395
Tumor
-0.4
881
Tumor
-0.4
883
Tumor
-0.4
817
Tumor
-0.4
943
Tumor
-0.4
967
Tumor
-0.4
975
Tumor
-0.4
815
Tumor
-0.4
343
Tumor
-0.4
535
Tumor
-0.4
685
Tumor
-0.4
697
Tumor
-0.4
463
Tumor
-0.4
1041
Tumor
-0.4
743
Tumor
-0.4
983
Tumor
-0.5
231
Tumor
-0.5
297
Tumor
-0.5
285
Tumor
-0.5
491
Tumor
-0.5
497
Tumor
-0.5
331
Tumor
-0.5
937
Tumor
-0.5
283
Tumor
-0.5
877
Tumor
-0.5
367
Tumor
-0.5
921
Tumor
-0.5
473
Tumor
-0.5
965
Tumor
-0.6
545
Tumor
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
