MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:191.6 nTPM
HPA Brain:120.9 nTPM
GTEx:191.6 nTPM
FANTOM5:69.1 Scaled Tags Per Million
Pig:104.2 nTPM
Mouse:136.7 nTPM
Allen mouse:6.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 120.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.7
2411 Female, age 72, unknown 100.2
2666 Male, age 74, left hemisphere 96.9
2219 Male, age 76, both hemispheres 94.4
1827 Male, age 72, unknown 93.1
2586 Male, age 75, left hemisphere 88.7
1870 Female, age 42, unknown 86.6
2019 Male, age 18, unknown 82.2
1833 Male, age 53, unknown 81.3
2828 Female, age 72, unknown 77.8
1830 Male, age 51, unknown 75.3
Dorsal raphe nucleus
nTPM: 92.0
2298 Female, age 72, unknown 99.3
2047 Male, age 72, unknown 96.5
1828 Male, age 53, unknown 95.8
2750 Male, age 76, both hemispheres 89.8
2016 Female, age 72, unknown 78.7
Inferior colliculus
nTPM: 79.6
1890 Male, age 53, unknown 83.7
2097 Female, age 72, unknown 81.1
1848 Female, age 42, unknown 76.7
2849 Male, age 72, unknown 76.7
Median raphe nucleus
nTPM: 93.9
2220 Male, age 76, midline 93.9
Periaquaductal grey, anterior
nTPM: 88.0
1947 Male, age 18, unknown 95.8
1795 Male, age 51, unknown 85.4
2502 Female, age 75, unknown 82.7
Periaquaductal grey, dorsal
nTPM: 73.8
1840 Male, age 53, unknown 81.8
2464 Female, age 72, unknown 77.1
2850 Male, age 76, both hemispheres 71.5
1831 Male, age 72, unknown 64.6
Periaquaductal grey, lateral
nTPM: 74.6
2272 Male, age 74, both hemispheres 76.3
2053 Male, age 18, unknown 74.7
2140 Male, age 76, both hemispheres 72.7
Pretectal area
nTPM: 83.0
2007 Male, age 72, unknown 92.8
1816 Male, age 51, unknown 92.7
1944 Female, age 72, unknown 92.6
1817 Female, age 42, unknown 87.2
1815 Male, age 53, unknown 84.9
2224 Female, age 72, unknown 83.7
2667 Female, age 75, unknown 80.5
2273 Male, age 74, both hemispheres 79.6
2825 Male, age 18, unknown 77.3
2407 Male, age 75, both hemispheres 71.0
2316 Male, age 76, right hemisphere 70.3
Red nucleus
nTPM: 84.0
2725 Female, age 75, unknown 97.2
1821 Female, age 72, unknown 96.1
2588 Male, age 74, left hemisphere 88.9
2503 Female, age 72, unknown 88.0
1865 Male, age 51, unknown 82.3
1954 Female, age 42, unknown 81.9
2769 Male, age 72, unknown 81.8
2227 Male, age 72, unknown 80.9
1904 Male, age 53, unknown 80.5
2584 Male, age 75, left hemisphere 79.0
2785 Male, age 18, unknown 77.6
2823 Male, age 76, right hemisphere 74.1
Substantia nigra
nTPM: 120.9
1916 Female, age 42, unknown 187.8
2241 Male, age 72, unknown 142.1
1851 Male, age 51, unknown 141.6
2699 Male, age 18, unknown 129.0
1941 Male, age 53, unknown 116.4
2409 Female, age 72, unknown 114.7
2665 Male, age 74, both hemispheres 114.0
1889 Female, age 72, unknown 99.8
2590 Female, age 75, unknown 87.9
2583 Male, age 75, right hemisphere 75.8
Superior colliculus
nTPM: 80.3
2668 Female, age 75, unknown 100.0
1796 Male, age 53, unknown 91.3
2587 Male, age 74, left hemisphere 83.4
2261 Male, age 18, unknown 81.3
2087 Female, age 72, unknown 81.1
1895 Male, age 76, right hemisphere 77.7
1839 Male, age 51, unknown 77.1
1913 Female, age 42, unknown 74.4
2664 Male, age 75, both hemispheres 71.9
1995 Male, age 72, unknown 65.2
Ventral tegmental area
nTPM: 103.9
1915 Female, age 42, unknown 127.0
2410 Female, age 72, unknown 121.2
2218 Male, age 76, both hemispheres 112.4
1942 Male, age 51, unknown 95.0
2223 Female, age 72, unknown 87.6
2021 Male, age 53, unknown 80.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 191.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 191.6
Samples: 139

Max nTPM: 358.7
Min nTPM: 101.8
Std nTPM: 54.3
Median nTPM: 180.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 358.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 346.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 335.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 312.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 306.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 302.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 302.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 295.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 293.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 279.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 278.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 69.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.1
FF:10158-103A5 76 years, female 69.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 104.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 104.2
Samples: 4

Max nTPM: 132.7
Min nTPM: 82.6
Sample A Female 132.7
Sample B Female 82.6
Sample C Male 113.9
Sample D Male 87.6
Midbrain
nTPM: 98.5
Samples: 4

Max nTPM: 121.4
Min nTPM: 77.1
Sample A Female 121.4
Sample B Female 109.4
Sample C Male 77.1
Sample D Male 86.1
Periaqueductal gray
nTPM: 93.8
Samples: 3

Max nTPM: 104.6
Min nTPM: 78.2
Sample B Female 98.7
Sample C Male 104.6
Sample D Male 78.2
Superior colliculi
nTPM: 98.3
Samples: 4

Max nTPM: 123.8
Min nTPM: 74.8
Sample A Female 123.8
Sample B Female 74.8
Sample C Male 95.3
Sample D Male 99.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 136.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 136.7
Samples: 4

Max nTPM: 144.6
Min nTPM: 130.5
Sample A Male 144.6
Sample B Male 133.0
Sample C Female 130.5
Sample D Female 138.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.3
2503 Antisense, RP_040407_02_H10, Mouse strain C57BL/6J (56 days, male) 6.3
2504 Antisense, RP_040407_02_H10, Mouse strain C57BL/6J (56 days, male) 3.0

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