We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNF8 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
44.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
162.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
118.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
114.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
110.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
102.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
101.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
98.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
98.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
94.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
93.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
91.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
91.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
89.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
88.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
85.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
85.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
83.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
79.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
78.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
78.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
78.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
78.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
77.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
76.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
75.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
75.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
75.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
75.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
75.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
75.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
75.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
75.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
74.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
73.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
73.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
73.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
73.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
73.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
73.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
73.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
72.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
71.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
71.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
71.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
70.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
69.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
68.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
68.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
68.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
68.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
66.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
66.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
66.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
66.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
65.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
64.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
64.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
64.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
64.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
64.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
64.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
63.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
62.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
62.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
62.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
62.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
61.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
61.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
61.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
61.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
60.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
60.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
60.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
60.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
60.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
60.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
59.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
59.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
59.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
58.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
58.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
58.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
58.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
57.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
57.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
57.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
56.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
56.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
56.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
56.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
55.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
55.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
55.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
55.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
55.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
55.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
55.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
55.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
55.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
55.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
55.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
55.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
55.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
54.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
54.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
54.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
53.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
53.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
52.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
51.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
51.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
51.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
51.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
51.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
51.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
51.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
51.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
51.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
51.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
51.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
51.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
50.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
50.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
50.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
50.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
50.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
49.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
49.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
49.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
49.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
48.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
48.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
48.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
47.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
47.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
47.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
47.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
47.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
47.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
46.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
46.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
46.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
46.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
46.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
45.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
45.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
45.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
45.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
45.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
45.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
45.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
45.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
44.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
44.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
44.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
44.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
44.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
43.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
43.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
43.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
43.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
43.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
43.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
43.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
43.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
43.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
42.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
42.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
42.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
42.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
42.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
41.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
41.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
41.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
41.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
41.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
41.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
41.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
41.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
41.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
41.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
41.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
40.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
40.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
40.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
40.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
40.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
40.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
39.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
39.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
39.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
39.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
39.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
39.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
39.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
38.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
38.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
38.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
38.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
38.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
38.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
38.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
38.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
37.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
37.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
37.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
37.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
37.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
37.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
37.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
36.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
36.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
36.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
36.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
36.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
36.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
36.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
36.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
36.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
36.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
35.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
35.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
35.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
35.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
35.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
35.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
35.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
35.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
34.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
34.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
34.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
34.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
34.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
34.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
34.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
34.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
34.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
34.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
33.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
33.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
33.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
33.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
33.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
32.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
32.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
32.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
31.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
31.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
31.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
31.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
31.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
31.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
31.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
31.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
31.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
30.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
30.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
30.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
30.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
30.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
30.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
30.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
30.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
30.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
29.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
29.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
28.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
28.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
28.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
28.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
28.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
27.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
27.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
27.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
27.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
26.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
26.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
26.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
26.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
25.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
24.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
24.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
22.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
21.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
20.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
17.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
15.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
13.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNF8 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.7
Number of samples
231
Samples
Sample
Description
TPM
DO23508
0 years, female, NA, stage:2, alive, 390 days
113.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
111.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
108.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
94.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
93.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
90.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
88.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
87.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
85.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
85.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
85.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
82.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
76.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
76.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
75.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
75.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
71.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
70.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
67.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
66.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
66.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
66.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
64.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
64.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
64.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
64.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
64.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
62.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
62.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
62.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
62.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
62.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
60.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
60.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
59.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
59.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
58.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
58.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
57.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
56.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
56.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
56.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
56.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
55.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
53.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
53.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
51.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
51.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
50.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
50.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
50.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
50.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
50.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
49.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
49.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
49.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
49.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
49.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
49.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
48.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
48.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
48.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
48.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
47.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
47.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
47.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
47.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
47.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
46.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
46.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
46.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
46.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
45.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
45.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
45.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
45.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
45.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
45.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
45.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
44.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
44.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
43.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
43.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
43.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
43.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
42.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
42.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
42.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
42.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
42.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
42.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
42.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
42.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
42.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
41.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
41.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
41.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
41.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
41.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
40.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
40.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
40.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
40.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
39.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
39.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
39.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
39.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
39.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
39.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
39.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
38.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
38.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
38.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
38.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
38.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
37.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
37.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
37.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
37.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
37.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
37.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
37.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
36.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
36.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
36.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
36.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
36.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
36.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
35.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
35.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
35.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
35.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
35.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
34.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
34.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
34.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
33.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
33.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
33.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
33.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
33.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
33.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
32.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
32.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
32.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
32.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
31.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
31.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
31.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
30.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
30.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
30.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
30.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
30.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
30.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
30.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
29.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
29.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
29.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
28.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
28.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
28.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
27.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
27.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
27.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
27.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
27.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
26.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
26.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
25.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
25.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
25.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
23.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
23.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.9
527
Tumor
0.6
1043
Tumor
0.6
617
Tumor
0.6
435
Tumor
0.5
127
Tumor
0.5
685
Tumor
0.5
981
Tumor
0.5
147
Tumor
0.5
815
Tumor
0.5
257
Tumor
0.5
727
Tumor
0.4
131
Tumor
0.4
411
Tumor
0.4
755
Tumor
0.4
357
Tumor
0.4
963
Tumor
0.4
867
Tumor
0.3
641
Tumor
0.3
863
Tumor
0.3
385
Tumor
0.3
635
Tumor
0.3
471
Tumor
0.3
137
Tumor
0.3
515
Tumor
0.3
537
Tumor
0.3
746
Normal
0.3
428
Normal
0.3
517
Tumor
0.3
353
Tumor
0.3
1016
Normal
0.3
111
Normal
0.3
698
Normal
0.3
1021
Tumor
0.3
227
Tumor
0.3
955
Tumor
0.3
516
Normal
0.3
786
Normal
0.2
1044
Normal
0.2
425
Tumor
0.2
912
Normal
0.2
447
Tumor
0.2
636
Normal
0.2
756
Normal
0.2
728
Normal
0.2
616
Normal
0.2
743
Tumor
0.2
642
Normal
0.2
112
Tumor
0.2
745
Tumor
0.2
873
Tumor
0.2
738
Normal
0.2
114
Normal
0.2
518
Normal
0.2
363
Tumor
0.2
448
Normal
0.2
824
Normal
0.2
261
Tumor
0.2
882
Normal
0.2
924
Normal
0.2
142
Normal
0.2
313
Tumor
0.2
351
Tumor
0.2
558
Normal
0.2
648
Normal
0.2
185
Tumor
0.2
431
Tumor
0.2
956
Normal
0.2
915
Tumor
0.2
436
Normal
0.2
445
Tumor
0.2
141
Tumor
0.2
528
Normal
0.2
298
Normal
0.2
361
Tumor
0.2
341
Tumor
0.2
526
Normal
0.2
818
Normal
0.2
553
Tumor
0.2
426
Normal
0.2
862
Normal
0.2
1046
Normal
0.2
484
Normal
0.1
432
Normal
0.1
958
Normal
0.1
228
Normal
0.1
386
Normal
0.1
918
Normal
0.1
926
Normal
0.1
864
Normal
0.1
744
Normal
0.1
286
Normal
0.1
778
Normal
0.1
954
Normal
0.1
271
Tumor
0.1
434
Normal
0.1
136
Normal
0.1
884
Normal
0.1
284
Normal
0.1
191
Tumor
0.1
297
Tumor
0.1
615
Tumor
0.1
777
Tumor
0.1
557
Tumor
0.1
925
Tumor
0.1
128
Normal
0.1
451
Tumor
0.1
422
Normal
0.1
356
Normal
0.1
883
Tumor
0.1
741
Tumor
0.1
364
Normal
0.1
944
Normal
0.1
186
Normal
0.1
858
Normal
0.1
627
Tumor
0.1
618
Normal
0.1
367
Tumor
0.1
696
Normal
0.1
187
Tumor
0.1
414
Normal
0.1
817
Tumor
0.1
196
Normal
0.1
568
Normal
0.1
723
Tumor
0.1
564
Normal
0.1
866
Normal
0.1
737
Tumor
0.1
1022
Normal
0.1
722
Normal
0.1
914
Normal
0.1
695
Tumor
0.1
132
Normal
0.1
413
Tumor
0.1
965
Tumor
0.1
1026
Normal
0.1
964
Normal
0.1
332
Normal
0.1
412
Normal
0.1
488
Normal
0.1
715
Tumor
0.1
392
Normal
0.1
976
Normal
0.1
816
Normal
0.0
572
Normal
0.0
574
Normal
0.0
113
Tumor
0.0
546
Normal
0.0
362
Normal
0.0
868
Normal
0.0
466
Normal
0.0
162
Normal
0.0
716
Normal
0.0
331
Tumor
0.0
742
Normal
0.0
172
Normal
0.0
272
Normal
0.0
416
Normal
0.0
1028
Normal
0.0
387
Tumor
0.0
662
Normal
0.0
1045
Tumor
0.0
146
Normal
0.0
982
Normal
0.0
874
Normal
0.0
394
Normal
0.0
421
Tumor
0.0
563
Tumor
0.0
452
Normal
0.0
628
Normal
0.0
126
Normal
0.0
952
Normal
0.0
878
Normal
0.0
514
Normal
0.0
665
Tumor
0.0
852
Normal
0.0
446
Normal
0.0
938
Normal
0.0
124
Normal
0.0
966
Normal
0.0
917
Tumor
0.0
312
Normal
0.0
468
Normal
0.0
148
Normal
0.0
916
Normal
0.0
462
Normal
0.0
686
Normal
0.0
212
Normal
0.0
224
Normal
0.0
968
Normal
0.0
1042
Normal
0.0
951
Tumor
0.0
666
Normal
0.0
481
Tumor
0.0
344
Normal
0.0
214
Normal
0.0
911
Tumor
0.0
352
Normal
0.0
714
Normal
0.0
524
Normal
0.0
342
Normal
0.0
1032
Normal
0.0
721
Tumor
-0.1
978
Normal
-0.1
534
Normal
-0.1
464
Normal
-0.1
664
Normal
-0.1
713
Tumor
-0.1
138
Normal
-0.1
222
Normal
-0.1
474
Normal
-0.1
223
Tumor
-0.1
1015
Tumor
-0.1
814
Normal
-0.1
188
Normal
-0.1
365
Tumor
-0.1
277
Tumor
-0.1
663
Tumor
-0.1
881
Tumor
-0.1
538
Normal
-0.1
482
Normal
-0.1
494
Normal
-0.1
376
Normal
-0.1
262
Normal
-0.1
444
Normal
-0.1
861
Tumor
-0.1
358
Normal
-0.1
922
Normal
-0.1
456
Normal
-0.1
145
Tumor
-0.1
813
Tumor
-0.1
368
Normal
-0.1
461
Tumor
-0.1
984
Normal
-0.1
231
Tumor
-0.1
877
Tumor
-0.1
443
Tumor
-0.1
1014
Normal
-0.1
523
Tumor
-0.1
354
Normal
-0.1
218
Normal
-0.1
953
Tumor
-0.1
396
Normal
-0.1
536
Normal
-0.2
388
Normal
-0.2
328
Normal
-0.2
472
Normal
-0.2
192
Normal
-0.2
314
Normal
-0.2
823
Tumor
-0.2
492
Normal
-0.2
433
Tumor
-0.2
327
Tumor
-0.2
424
Normal
-0.2
415
Tumor
-0.2
366
Normal
-0.2
957
Tumor
-0.2
975
Tumor
-0.2
857
Tumor
-0.2
465
Tumor
-0.2
977
Tumor
-0.2
258
Normal
-0.2
355
Tumor
-0.2
851
Tumor
-0.2
423
Tumor
-0.2
221
Tumor
-0.2
483
Tumor
-0.2
661
Tumor
-0.2
724
Normal
-0.2
937
Tumor
-0.2
983
Tumor
-0.2
498
Normal
-0.2
384
Normal
-0.2
171
Tumor
-0.2
967
Tumor
-0.2
135
Tumor
-0.2
311
Tumor
-0.2
921
Tumor
-0.3
467
Tumor
-0.3
478
Normal
-0.3
232
Normal
-0.3
455
Tumor
-0.3
647
Tumor
-0.3
1031
Tumor
-0.3
1013
Tumor
-0.3
491
Tumor
-0.3
427
Tumor
-0.3
672
Normal
-0.3
1025
Tumor
-0.3
554
Normal
-0.3
195
Tumor
-0.3
278
Normal
-0.3
943
Tumor
-0.3
393
Tumor
-0.3
513
Tumor
-0.3
525
Tumor
-0.3
391
Tumor
-0.4
268
Normal
-0.4
533
Tumor
-0.4
217
Tumor
-0.4
213
Tumor
-0.4
573
Tumor
-0.4
535
Tumor
-0.4
477
Tumor
-0.4
375
Tumor
-0.4
785
Tumor
-0.4
211
Tumor
-0.4
865
Tumor
-0.4
1041
Tumor
-0.4
487
Tumor
-0.4
161
Tumor
-0.4
697
Tumor
-0.5
497
Tumor
-0.5
383
Tumor
-0.5
545
Tumor
-0.5
123
Tumor
-0.5
395
Tumor
-0.5
125
Tumor
-0.5
463
Tumor
-0.5
567
Tumor
-0.5
283
Tumor
-0.5
473
Tumor
-0.6
671
Tumor
-0.6
285
Tumor
-0.6
913
Tumor
-0.6
343
Tumor
-0.6
923
Tumor
-0.6
493
Tumor
-0.6
571
Tumor
-0.7
267
Tumor
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
