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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GPAT4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
133.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
55.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
47.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
42.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
38.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
36.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
36.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
35.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
35.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
32.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
31.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
31.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
31.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
29.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
29.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
29.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
28.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
26.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
25.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
24.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
22.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
20.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
1.8
311
Tumor
1.3
685
Tumor
1.3
525
Tumor
1.1
435
Tumor
0.9
367
Tumor
0.8
427
Tumor
0.8
451
Tumor
0.8
745
Tumor
0.7
385
Tumor
0.7
983
Tumor
0.6
191
Tumor
0.6
375
Tumor
0.6
533
Tumor
0.6
635
Tumor
0.5
135
Tumor
0.5
113
Tumor
0.5
697
Tumor
0.5
257
Tumor
0.5
573
Tumor
0.4
221
Tumor
0.4
851
Tumor
0.4
473
Tumor
0.4
127
Tumor
0.4
493
Tumor
0.4
755
Tumor
0.4
361
Tumor
0.4
665
Tumor
0.4
161
Tumor
0.4
741
Tumor
0.3
1027
Tumor
0.3
1015
Tumor
0.3
261
Tumor
0.3
915
Tumor
0.3
463
Tumor
0.3
497
Tumor
0.3
911
Tumor
0.3
145
Tumor
0.3
327
Tumor
0.3
527
Tumor
0.3
231
Tumor
0.3
112
Tumor
0.3
313
Tumor
0.3
232
Normal
0.3
951
Tumor
0.3
616
Normal
0.3
671
Tumor
0.3
128
Normal
0.3
513
Tumor
0.2
465
Tumor
0.2
125
Tumor
0.2
455
Tumor
0.2
421
Tumor
0.2
365
Tumor
0.2
395
Tumor
0.2
981
Tumor
0.2
641
Tumor
0.2
477
Tumor
0.2
391
Tumor
0.2
466
Normal
0.2
615
Tumor
0.2
883
Tumor
0.2
913
Tumor
0.2
343
Tumor
0.2
411
Tumor
0.2
362
Normal
0.1
975
Tumor
0.1
567
Tumor
0.1
447
Tumor
0.1
332
Normal
0.1
124
Normal
0.1
111
Normal
0.1
937
Tumor
0.1
384
Normal
0.1
456
Normal
0.1
572
Normal
0.1
138
Normal
0.1
123
Tumor
0.1
627
Tumor
0.1
388
Normal
0.1
258
Normal
0.1
366
Normal
0.1
864
Normal
0.1
277
Tumor
0.1
186
Normal
0.1
368
Normal
0.1
376
Normal
0.1
817
Tumor
0.1
278
Normal
0.1
331
Tumor
0.1
468
Normal
0.1
917
Tumor
0.1
448
Normal
0.1
863
Tumor
0.1
147
Tumor
0.1
713
Tumor
0.1
356
Normal
0.1
628
Normal
0.1
452
Normal
0.1
211
Tumor
0.1
298
Normal
0.1
185
Tumor
0.1
1014
Normal
0.1
132
Normal
0.1
114
Normal
0.0
136
Normal
0.0
618
Normal
0.0
443
Tumor
0.0
172
Normal
0.0
1028
Normal
0.0
142
Normal
0.0
978
Normal
0.0
494
Normal
0.0
1026
Normal
0.0
471
Tumor
0.0
742
Normal
0.0
662
Normal
0.0
943
Tumor
0.0
312
Normal
0.0
412
Normal
0.0
666
Normal
0.0
126
Normal
0.0
396
Normal
0.0
423
Tumor
0.0
916
Normal
0.0
648
Normal
0.0
1022
Normal
0.0
478
Normal
0.0
474
Normal
0.0
444
Normal
0.0
865
Tumor
0.0
914
Normal
0.0
813
Tumor
N/A
272
Normal
0.0
415
Tumor
0.0
351
Tumor
0.0
267
Tumor
0.0
722
Normal
0.0
977
Tumor
0.0
866
Normal
0.0
328
Normal
0.0
387
Tumor
0.0
342
Normal
0.0
814
Normal
0.0
187
Tumor
0.0
383
Tumor
0.0
982
Normal
0.0
571
Tumor
0.0
642
Normal
0.0
738
Normal
0.0
564
Normal
0.0
574
Normal
0.0
862
Normal
0.0
394
Normal
0.0
785
Tumor
0.0
816
Normal
0.0
268
Normal
0.0
954
Normal
0.0
445
Tumor
0.0
976
Normal
0.0
481
Tumor
0.0
363
Tumor
0.0
355
Tumor
-0.1
756
Normal
-0.1
446
Normal
-0.1
358
Normal
-0.1
1045
Tumor
-0.1
462
Normal
-0.1
392
Normal
-0.1
957
Tumor
-0.1
431
Tumor
-0.1
1013
Tumor
-0.1
924
Normal
-0.1
537
Tumor
-0.1
727
Tumor
-0.1
617
Tumor
-0.1
944
Normal
-0.1
464
Normal
-0.1
528
Normal
-0.1
874
Normal
-0.1
964
Normal
-0.1
563
Tumor
-0.1
1016
Normal
-0.1
162
Normal
-0.1
1043
Tumor
-0.1
195
Tumor
-0.1
636
Normal
-0.1
558
Normal
-0.1
386
Normal
-0.1
148
Normal
-0.1
196
Normal
-0.1
868
Normal
-0.1
491
Tumor
-0.1
524
Normal
-0.1
488
Normal
-0.1
222
Normal
-0.1
344
Normal
-0.1
432
Normal
-0.1
425
Tumor
-0.1
297
Tumor
-0.1
393
Tumor
-0.1
314
Normal
-0.1
262
Normal
-0.1
482
Normal
-0.1
188
Normal
-0.1
514
Normal
-0.1
696
Normal
-0.1
966
Normal
-0.1
434
Normal
-0.1
467
Tumor
-0.1
492
Normal
-0.1
714
Normal
-0.1
663
Tumor
-0.1
535
Tumor
-0.1
436
Normal
-0.1
557
Tumor
-0.1
867
Tumor
-0.1
472
Normal
-0.1
214
Normal
-0.1
672
Normal
-0.1
918
Normal
-0.1
922
Normal
-0.1
354
Normal
-0.1
661
Tumor
-0.1
1025
Tumor
-0.1
141
Tumor
-0.1
878
Normal
-0.1
984
Normal
-0.1
213
Tumor
-0.1
568
Normal
-0.1
526
Normal
-0.1
746
Normal
-0.1
723
Tumor
-0.1
1032
Normal
-0.1
873
Tumor
-0.1
955
Tumor
-0.1
498
Normal
-0.1
744
Normal
-0.2
534
Normal
-0.2
422
Normal
-0.2
518
Normal
-0.2
698
Normal
-0.2
686
Normal
-0.2
968
Normal
-0.2
223
Tumor
-0.2
1044
Normal
-0.2
921
Tumor
-0.2
716
Normal
-0.2
823
Tumor
-0.2
536
Normal
-0.2
137
Tumor
-0.2
926
Normal
-0.2
956
Normal
-0.2
416
Normal
-0.2
483
Tumor
-0.2
484
Normal
-0.2
786
Normal
-0.2
728
Normal
-0.2
538
Normal
-0.2
546
Normal
-0.2
938
Normal
-0.2
523
Tumor
-0.2
852
Normal
-0.2
218
Normal
-0.2
228
Normal
-0.2
1041
Tumor
-0.2
461
Tumor
-0.2
426
Normal
-0.2
171
Tumor
-0.2
882
Normal
-0.2
952
Normal
-0.2
285
Tumor
-0.2
413
Tumor
-0.2
664
Normal
-0.2
364
Normal
-0.2
861
Tumor
-0.2
778
Normal
-0.2
1046
Normal
-0.2
958
Normal
-0.2
877
Tumor
-0.3
192
Normal
-0.3
554
Normal
-0.3
516
Normal
-0.3
724
Normal
-0.3
428
Normal
-0.3
146
Normal
-0.3
283
Tumor
-0.3
1042
Normal
-0.3
1021
Tumor
-0.3
414
Normal
-0.3
912
Normal
-0.3
818
Normal
-0.3
341
Tumor
-0.3
424
Normal
-0.3
881
Tumor
-0.3
884
Normal
-0.3
858
Normal
-0.3
217
Tumor
-0.3
284
Normal
-0.3
227
Tumor
-0.3
286
Normal
-0.4
824
Normal
-0.4
224
Normal
-0.4
212
Normal
-0.4
433
Tumor
-0.4
737
Tumor
-0.4
743
Tumor
-0.4
815
Tumor
-0.4
545
Tumor
-0.4
271
Tumor
-0.4
857
Tumor
-0.5
352
Normal
-0.5
923
Tumor
-0.5
953
Tumor
-0.5
131
Tumor
-0.5
517
Tumor
-0.5
963
Tumor
-0.6
647
Tumor
-0.6
965
Tumor
-0.6
515
Tumor
-0.6
357
Tumor
-0.6
695
Tumor
-0.7
777
Tumor
-0.7
553
Tumor
-0.7
353
Tumor
-0.7
721
Tumor
-0.7
487
Tumor
-0.7
715
Tumor
-0.7
1031
Tumor
-0.8
967
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
