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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMED4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
117.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
106.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
94.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
90.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
86.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
84.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
78.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
73.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
73.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
72.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
69.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
69.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
68.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
67.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
67.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
66.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
66.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
65.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
64.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
64.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
64.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
63.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
62.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
62.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
61.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
60.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
60.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
59.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
59.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
59.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
59.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
58.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
57.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
57.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
55.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
55.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
54.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
53.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
52.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
51.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
51.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
51.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
50.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
50.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
50.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
50.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
49.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
48.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
48.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
48.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
48.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
47.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
47.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
47.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
47.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
47.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
46.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
46.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
46.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
46.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
46.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
45.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
45.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
45.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
45.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
45.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
45.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
45.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
45.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
45.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
44.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
44.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
44.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
44.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
44.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
44.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
43.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
43.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
43.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
43.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
43.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
43.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
42.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
42.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
42.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
41.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
41.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
41.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
41.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
41.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
41.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
41.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
41.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
41.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
41.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
40.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
40.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
40.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
40.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
40.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
40.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
40.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
40.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
39.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
39.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
39.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
39.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
39.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
39.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
39.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
39.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
38.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
38.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
38.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
38.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
38.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
38.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
38.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
38.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
38.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
38.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
38.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
37.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
37.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
37.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
37.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
37.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
37.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
36.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
36.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
36.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
36.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
36.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
36.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
36.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
36.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
36.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
36.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
35.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
35.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
35.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
35.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
35.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
35.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
35.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
35.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
35.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
34.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
34.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
34.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
34.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
34.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
34.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
34.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
34.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
34.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
34.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
34.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
33.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
33.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
33.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
33.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
33.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
33.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
33.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
32.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
32.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
32.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
32.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
32.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
32.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
32.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
32.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
32.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
32.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
32.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
31.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
31.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
31.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
31.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
31.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
31.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
31.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
31.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
31.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
31.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
30.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
30.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
30.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
30.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
30.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
30.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
29.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
29.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
29.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
29.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
29.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
29.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
29.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
29.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
28.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
28.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
28.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
28.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
28.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
28.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
28.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
28.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
27.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
27.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
27.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
27.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
27.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
27.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
27.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
27.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
27.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
26.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
26.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
26.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
25.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
25.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
25.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
25.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
25.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
24.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
24.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
24.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
23.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
23.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
23.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
22.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
22.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
22.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
22.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
22.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
21.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
21.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
20.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
19.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
19.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
19.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
18.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
18.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
15.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMED4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
32.3
Number of samples
231
Samples
Sample
Description
TPM
DO45205
0 years, female, NA, stage:2, dead, 90 days
92.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
83.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
77.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
74.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
73.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
72.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
66.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
65.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
64.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
64.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
64.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
64.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
63.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
62.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
60.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
54.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
54.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
52.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
51.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
50.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
50.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
50.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
49.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
48.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
48.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
47.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
46.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
46.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
45.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
45.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
45.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
45.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
44.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
44.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
44.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
44.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
43.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
43.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
43.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
42.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
42.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
42.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
41.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
41.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
41.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
41.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
41.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
41.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
40.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
40.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
40.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
40.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
40.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
40.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
39.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
39.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
39.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
39.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
39.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
39.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
39.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
39.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
39.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
38.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
38.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
38.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
37.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
37.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
37.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
37.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
37.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
37.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
37.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
37.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
36.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
36.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
36.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
35.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
35.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
34.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
34.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
34.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
34.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
34.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
33.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
33.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
33.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
33.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
33.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
33.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
33.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
33.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
33.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
33.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
33.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
32.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
32.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
32.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
32.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
32.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
32.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
31.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
31.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
31.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
31.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
31.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
30.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
30.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
30.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
30.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
30.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
30.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
29.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
29.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
29.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
29.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
29.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
29.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
28.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
28.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
28.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
28.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
28.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
28.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
28.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
28.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
28.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
27.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
27.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
27.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
27.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
27.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
26.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
26.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
25.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
24.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
911
Tumor
1.3
553
Tumor
0.9
445
Tumor
0.8
533
Tumor
0.7
685
Tumor
0.7
527
Tumor
0.7
227
Tumor
0.7
697
Tumor
0.6
1045
Tumor
0.6
857
Tumor
0.6
1043
Tumor
0.6
913
Tumor
0.5
443
Tumor
0.5
785
Tumor
0.5
1044
Normal
0.5
755
Tumor
0.5
481
Tumor
0.4
557
Tumor
0.4
261
Tumor
0.4
554
Normal
0.4
1041
Tumor
0.4
1046
Normal
0.4
713
Tumor
0.4
635
Tumor
0.4
363
Tumor
0.4
984
Normal
0.4
448
Normal
0.4
1014
Normal
0.4
257
Tumor
0.4
411
Tumor
0.4
636
Normal
0.4
558
Normal
0.3
714
Normal
0.3
1015
Tumor
0.3
952
Normal
0.3
937
Tumor
0.3
471
Tumor
0.3
817
Tumor
0.3
978
Normal
0.3
967
Tumor
0.3
231
Tumor
0.3
494
Normal
0.3
957
Tumor
0.3
686
Normal
0.3
698
Normal
0.3
515
Tumor
0.3
728
Normal
0.3
357
Tumor
0.3
524
Normal
0.3
715
Tumor
0.3
528
Normal
0.3
953
Tumor
0.3
536
Normal
0.3
938
Normal
0.3
922
Normal
0.3
142
Normal
0.3
851
Tumor
0.3
426
Normal
0.3
616
Normal
0.3
513
Tumor
0.3
145
Tumor
0.3
983
Tumor
0.3
514
Normal
0.3
741
Tumor
0.3
195
Tumor
0.3
958
Normal
0.3
232
Normal
0.3
214
Normal
0.3
925
Tumor
0.3
412
Normal
0.2
148
Normal
0.2
435
Tumor
0.2
955
Tumor
0.2
977
Tumor
0.2
628
Normal
0.2
912
Normal
0.2
867
Tumor
0.2
981
Tumor
0.2
815
Tumor
0.2
915
Tumor
0.2
564
Normal
0.2
385
Tumor
0.2
696
Normal
0.2
493
Tumor
0.2
427
Tumor
0.2
723
Tumor
0.2
873
Tumor
0.2
526
Normal
0.2
128
Normal
0.2
1032
Normal
0.2
534
Normal
0.2
852
Normal
0.2
738
Normal
0.2
572
Normal
0.2
568
Normal
0.2
466
Normal
0.2
746
Normal
0.2
823
Tumor
0.2
136
Normal
0.2
355
Tumor
0.2
137
Tumor
0.2
546
Normal
0.2
332
Normal
0.2
721
Tumor
0.2
356
Normal
0.2
393
Tumor
0.2
314
Normal
0.2
523
Tumor
0.2
114
Normal
0.2
212
Normal
0.2
262
Normal
0.2
535
Tumor
0.2
387
Tumor
0.2
716
Normal
0.2
365
Tumor
0.2
924
Normal
0.2
1022
Normal
0.2
824
Normal
0.2
433
Tumor
0.2
727
Tumor
0.2
877
Tumor
0.2
648
Normal
0.2
944
Normal
0.2
778
Normal
0.2
218
Normal
0.2
351
Tumor
0.2
488
Normal
0.2
861
Tumor
0.2
392
Normal
0.2
518
Normal
0.2
368
Normal
0.2
617
Tumor
0.2
132
Normal
0.2
492
Normal
0.2
474
Normal
0.2
487
Tumor
0.2
642
Normal
0.2
864
Normal
0.2
478
Normal
0.2
111
Normal
0.2
722
Normal
0.1
196
Normal
0.1
615
Tumor
0.1
131
Tumor
0.1
497
Tumor
0.1
162
Normal
0.1
421
Tumor
0.1
462
Normal
0.1
124
Normal
0.1
285
Tumor
0.1
982
Normal
0.1
127
Tumor
0.1
516
Normal
0.1
343
Tumor
0.1
422
Normal
0.1
884
Normal
0.1
423
Tumor
0.1
491
Tumor
0.1
695
Tumor
0.1
452
Normal
0.1
1016
Normal
0.1
743
Tumor
0.1
222
Normal
0.1
414
Normal
0.1
665
Tumor
0.1
571
Tumor
0.1
563
Tumor
0.1
298
Normal
0.1
756
Normal
0.1
627
Tumor
0.1
956
Normal
0.1
647
Tumor
0.1
661
Tumor
0.1
964
Normal
0.1
482
Normal
0.1
662
Normal
0.1
172
Normal
0.1
1028
Normal
0.1
267
Tumor
0.1
228
Normal
0.1
742
Normal
0.1
484
Normal
0.1
664
Normal
0.1
376
Normal
0.1
918
Normal
0.1
468
Normal
0.1
278
Normal
0.1
125
Tumor
0.1
966
Normal
0.1
786
Normal
0.1
666
Normal
0.1
816
Normal
0.1
135
Tumor
0.1
192
Normal
0.1
431
Tumor
0.1
344
Normal
0.1
146
Normal
0.1
436
Normal
0.1
813
Tumor
0.1
328
Normal
0.1
926
Normal
0.1
268
Normal
0.1
865
Tumor
0.1
138
Normal
0.1
213
Tumor
0.1
258
Normal
0.1
284
Normal
0.1
171
Tumor
0.1
923
Tumor
0.1
444
Normal
0.1
353
Tumor
0.0
954
Normal
0.0
362
Normal
0.0
312
Normal
0.0
277
Tumor
0.0
818
Normal
0.0
862
Normal
0.0
434
Normal
0.0
354
Normal
0.0
976
Normal
0.0
394
Normal
0.0
473
Tumor
0.0
271
Tumor
0.0
672
Normal
0.0
878
Normal
0.0
446
Normal
0.0
358
Normal
0.0
447
Tumor
0.0
858
Normal
0.0
963
Tumor
0.0
424
Normal
0.0
618
Normal
0.0
463
Tumor
0.0
914
Normal
0.0
141
Tumor
0.0
777
Tumor
0.0
272
Normal
0.0
882
Normal
0.0
968
Normal
0.0
975
Tumor
0.0
1025
Tumor
0.0
1021
Tumor
0.0
1027
Tumor
0.0
186
Normal
0.0
126
Normal
0.0
188
Normal
0.0
388
Normal
0.0
428
Normal
0.0
641
Tumor
0.0
327
Tumor
0.0
313
Tumor
0.0
191
Tumor
0.0
147
Tumor
0.0
866
Normal
0.0
395
Tumor
0.0
538
Normal
0.0
574
Normal
0.0
185
Tumor
0.0
342
Normal
0.0
573
Tumor
0.0
868
Normal
0.0
221
Tumor
0.0
461
Tumor
0.0
432
Normal
0.0
1042
Normal
0.0
874
Normal
0.0
366
Normal
0.0
1013
Tumor
0.0
881
Tumor
-0.1
416
Normal
-0.1
361
Tumor
-0.1
1026
Normal
-0.1
545
Tumor
-0.1
352
Normal
-0.1
217
Tumor
-0.1
223
Tumor
-0.1
331
Tumor
-0.1
916
Normal
-0.1
364
Normal
-0.1
396
Normal
-0.1
498
Normal
-0.1
224
Normal
-0.1
464
Normal
-0.1
112
Tumor
-0.1
455
Tumor
-0.1
386
Normal
-0.1
456
Normal
-0.1
663
Tumor
-0.1
671
Tumor
-0.1
472
Normal
-0.1
525
Tumor
-0.1
384
Normal
-0.1
187
Tumor
-0.1
415
Tumor
-0.1
477
Tumor
-0.1
517
Tumor
-0.1
367
Tumor
-0.2
425
Tumor
-0.2
286
Normal
-0.2
951
Tumor
-0.2
744
Normal
-0.2
921
Tumor
-0.2
483
Tumor
-0.2
1031
Tumor
-0.2
467
Tumor
-0.2
383
Tumor
-0.2
283
Tumor
-0.2
413
Tumor
-0.2
113
Tumor
-0.2
745
Tumor
-0.2
917
Tumor
-0.2
297
Tumor
-0.2
814
Normal
-0.2
341
Tumor
-0.3
465
Tumor
-0.3
161
Tumor
-0.3
965
Tumor
-0.3
943
Tumor
-0.3
883
Tumor
-0.3
537
Tumor
-0.3
724
Normal
-0.4
375
Tumor
-0.4
863
Tumor
-0.4
737
Tumor
-0.4
211
Tumor
-0.4
391
Tumor
-0.4
123
Tumor
-0.5
451
Tumor
-0.5
567
Tumor
-0.5
311
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
