HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:8.3 nTPM
HPA Brain:64.3 nTPM
GTEx:8.3 nTPM
FANTOM5:39.3 Scaled Tags Per Million
Pig:59.1 nTPM
Mouse:52.2 nTPM
Allen mouse:12.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA027726Antibody HPA075591
Glial cells Not detectedLow
Neuronal cells Not detectedMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 64.3
Sample id Sample description nTPM
Hippocampus
nTPM: 52.6
1898 Male, age 80, left hemisphere 64.6
2148 Female, age 91, left hemisphere 57.5
1911 Female, age 85, right hemisphere 49.9
2621 Female, age 67, right hemisphere 49.9
2529 Female, age 94, left hemisphere 47.8
1855 Male, age 76, left hemisphere 45.9
Dentate gyrus
nTPM: 53.0
1927 Female, age 91, both hemispheres 68.3
2531 Female, age 67, both hemispheres 61.2
2246 Female, age 85, both hemispheres 49.1
2530 Female, age 94, left hemisphere 47.4
2528 Male, age 74, both hemispheres 46.0
2010 Male, age 76, both hemispheres 45.9
Entorhinal gyrus
nTPM: 64.3
1938 Female, age 85, left hemisphere 73.7
2764 Male, age 80, right hemisphere 71.3
1787 Male, age 76, left hemisphere 66.7
2613 Female, age 94, left hemisphere 64.7
2686 Male, age 75, right hemisphere 56.9
2117 Female, age 91, right hemisphere 52.6
Hippocampus, CA1
nTPM: 57.2
2749 Male, age 80, left hemisphere 81.0
2045 Male, age 76, both hemispheres 59.4
1873 Female, age 85, both hemispheres 57.3
2527 Male, age 74, both hemispheres 46.7
2082 Female, age 91, right hemisphere 41.5
Hippocampus, CA2
nTPM: 52.2
1892 Male, age 76, both hemispheres 71.7
1963 Male, age 80, left hemisphere 53.9
1940 Female, age 85, left hemisphere 50.5
2437 Female, age 94, left hemisphere 48.8
2113 Female, age 91, right hemisphere 45.1
2249 Male, age 74, both hemispheres 43.2
Hippocampus, CA3
nTPM: 60.1
2137 Male, age 80, left hemisphere 81.4
1867 Male, age 76, both hemispheres 65.7
2620 Female, age 94, left hemisphere 62.6
1891 Female, age 85, both hemispheres 57.0
2861 Female, age 67, both hemispheres 50.5
2436 Male, age 74, both hemispheres 43.4
Parahippocampal cortex
nTPM: 56.2
1850 Male, age 80, both hemispheres 74.7
1990 Female, age 91, right hemisphere 65.0
1933 Female, age 85, both hemispheres 59.8
2532 Female, age 72, left hemisphere 58.1
2245 Female, age 91, both hemispheres 55.1
2692 Male, age 74, both hemispheres 53.7
2018 Male, age 76, both hemispheres 52.4
2622 Female, age 67, right hemisphere 49.9
2693 Female, age 94, both hemispheres 49.7
2250 Female, age 67, right hemisphere 43.4
Perirhinal gyrus
nTPM: 62.9
1847 Female, age 91, left hemisphere 73.0
1794 Male, age 80, right hemisphere 67.9
2848 Male, age 76, right hemisphere 61.2
2521 Female, age 94, right hemisphere 56.6
1841 Female, age 85, right hemisphere 55.6
Subiculum
nTPM: 55.2
1901 Male, age 80, both hemispheres 68.8
1977 Female, age 85, both hemispheres 64.9
2438 Female, age 94, left hemisphere 56.1
2729 Female, age 91, right hemisphere 49.0
2619 Male, age 74, both hemispheres 47.2
2042 Male, age 76, both hemispheres 45.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 8.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 8.3
Samples: 197

Max nTPM: 15.2
Min nTPM: 2.2
Std nTPM: 1.9
Median nTPM: 8.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 15.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 14.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 14.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 13.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 12.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 12.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 12.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 12.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 11.9
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 11.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 11.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 39.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 39.3
FF:10169-103B7 60 years, female 47.7
FF:10153-102I9 76 years, female 30.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 59.1
Pig sample Sample description nTPM
Subiculum
nTPM: 53.1
Samples: 4

Max nTPM: 68.8
Min nTPM: 45.2
Sample A Female 68.8
Sample B Female 50.3
Sample C Male 45.2
Sample D Male 47.9
Dorsal hippocampus
nTPM: 58.2
Samples: 4

Max nTPM: 60.2
Min nTPM: 52.6
Sample A Female 60.2
Sample B Female 60.1
Sample C Male 59.8
Sample D Male 52.6
Entorhinal cortex
nTPM: 59.1
Samples: 4

Max nTPM: 60.9
Min nTPM: 56.8
Sample A Female 56.8
Sample B Female 60.9
Sample C Male 59.0
Sample D Male 59.5
Ventral hippocampus
nTPM: 51.3
Samples: 4

Max nTPM: 56.9
Min nTPM: 45.5
Sample A Female 56.9
Sample B Female 46.9
Sample C Male 45.5
Sample D Male 55.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 52.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 52.2
Samples: 4

Max nTPM: 58.0
Min nTPM: 43.9
Sample A Male 54.6
Sample B Male 52.3
Sample C Female 43.9
Sample D Female 58.0
Hippocampal formation
nTPM: 43.5
Samples: 4

Max nTPM: 51.2
Min nTPM: 34.8
Sample A Male 38.5
Sample B Male 49.5
Sample C Female 51.2
Sample D Female 34.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 12.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.8
68797721 Antisense, RP_050215_01_A05, Mouse strain C57BL/6J (56 days, male) 13.9
71064176 Antisense, RP_050725_03_D03, Mouse strain C57BL/6J (56 days, male) 11.7

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