MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.7 nTPM
HPA Brain:49.7 nTPM
GTEx:5.7 nTPM
FANTOM5:21.4 Scaled Tags Per Million
Pig:50.0 nTPM
Mouse:35.9 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 49.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.7
1827 Male, age 72, unknown 52.4
2586 Male, age 75, left hemisphere 51.2
1870 Female, age 42, unknown 44.2
2828 Female, age 72, unknown 44.2
2019 Male, age 18, unknown 42.4
2411 Female, age 72, unknown 42.3
2219 Male, age 76, both hemispheres 40.9
1833 Male, age 53, unknown 40.8
1830 Male, age 51, unknown 40.3
2666 Male, age 74, left hemisphere 38.2
Dorsal raphe nucleus
nTPM: 39.5
2016 Female, age 72, unknown 42.6
2047 Male, age 72, unknown 41.4
1828 Male, age 53, unknown 38.3
2750 Male, age 76, both hemispheres 37.7
2298 Female, age 72, unknown 37.6
Inferior colliculus
nTPM: 49.7
2097 Female, age 72, unknown 55.8
2849 Male, age 72, unknown 50.7
1890 Male, age 53, unknown 46.9
1848 Female, age 42, unknown 45.4
Median raphe nucleus
nTPM: 37.4
2220 Male, age 76, midline 37.4
Periaquaductal grey, anterior
nTPM: 45.8
1947 Male, age 18, unknown 48.0
2502 Female, age 75, unknown 46.4
1795 Male, age 51, unknown 42.9
Periaquaductal grey, dorsal
nTPM: 43.9
1840 Male, age 53, unknown 50.3
2464 Female, age 72, unknown 44.0
1831 Male, age 72, unknown 42.1
2850 Male, age 76, both hemispheres 39.3
Periaquaductal grey, lateral
nTPM: 40.7
2140 Male, age 76, both hemispheres 43.5
2053 Male, age 18, unknown 40.7
2272 Male, age 74, both hemispheres 38.0
Pretectal area
nTPM: 44.6
2007 Male, age 72, unknown 49.8
1816 Male, age 51, unknown 49.7
1944 Female, age 72, unknown 45.8
2825 Male, age 18, unknown 45.6
1817 Female, age 42, unknown 44.3
2407 Male, age 75, both hemispheres 44.2
1815 Male, age 53, unknown 43.8
2224 Female, age 72, unknown 43.6
2667 Female, age 75, unknown 43.4
2273 Male, age 74, both hemispheres 42.8
2316 Male, age 76, right hemisphere 37.1
Red nucleus
nTPM: 38.4
2588 Male, age 74, left hemisphere 49.6
2584 Male, age 75, left hemisphere 46.3
2785 Male, age 18, unknown 43.8
2503 Female, age 72, unknown 42.8
2725 Female, age 75, unknown 37.6
1821 Female, age 72, unknown 37.1
1865 Male, age 51, unknown 35.7
2227 Male, age 72, unknown 35.6
1904 Male, age 53, unknown 35.2
1954 Female, age 42, unknown 35.1
2769 Male, age 72, unknown 34.5
2823 Male, age 76, right hemisphere 27.2
Substantia nigra
nTPM: 44.2
2409 Female, age 72, unknown 53.9
2583 Male, age 75, right hemisphere 50.0
1941 Male, age 53, unknown 48.0
2590 Female, age 75, unknown 47.1
1889 Female, age 72, unknown 44.3
2665 Male, age 74, both hemispheres 42.1
1851 Male, age 51, unknown 42.0
2241 Male, age 72, unknown 40.2
1916 Female, age 42, unknown 39.9
2699 Male, age 18, unknown 34.7
Superior colliculus
nTPM: 44.6
1895 Male, age 76, right hemisphere 48.0
2664 Male, age 75, both hemispheres 47.2
2587 Male, age 74, left hemisphere 46.6
2261 Male, age 18, unknown 46.3
1796 Male, age 53, unknown 45.9
1913 Female, age 42, unknown 45.6
1839 Male, age 51, unknown 45.0
2668 Female, age 75, unknown 42.2
1995 Male, age 72, unknown 40.9
2087 Female, age 72, unknown 38.8
Ventral tegmental area
nTPM: 41.3
1942 Male, age 51, unknown 46.5
2410 Female, age 72, unknown 42.7
1915 Female, age 42, unknown 42.4
2021 Male, age 53, unknown 40.2
2223 Female, age 72, unknown 39.7
2218 Male, age 76, both hemispheres 36.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.7
Samples: 139

Max nTPM: 11.2
Min nTPM: 2.7
Std nTPM: 1.4
Median nTPM: 5.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 11.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 11.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 10.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 9.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 9.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 8.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 8.7
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 8.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 8.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 8.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 7.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.4
FF:10158-103A5 76 years, female 21.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 50.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 43.0
Samples: 4

Max nTPM: 47.1
Min nTPM: 38.2
Sample A Female 42.7
Sample B Female 38.2
Sample C Male 44.1
Sample D Male 47.1
Midbrain
nTPM: 49.3
Samples: 4

Max nTPM: 54.3
Min nTPM: 41.6
Sample A Female 41.6
Sample B Female 51.4
Sample C Male 50.0
Sample D Male 54.3
Periaqueductal gray
nTPM: 49.9
Samples: 3

Max nTPM: 52.4
Min nTPM: 48.7
Sample B Female 52.4
Sample C Male 48.7
Sample D Male 48.7
Superior colliculi
nTPM: 42.2
Samples: 4

Max nTPM: 49.7
Min nTPM: 27.2
Sample A Female 45.8
Sample B Female 27.2
Sample C Male 45.9
Sample D Male 49.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 35.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.9
Samples: 4

Max nTPM: 39.3
Min nTPM: 30.2
Sample A Male 30.2
Sample B Male 37.6
Sample C Female 39.3
Sample D Female 36.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
71064176 Antisense, RP_050725_03_D03, Mouse strain C57BL/6J (56 days, male) 5.4
68797721 Antisense, RP_050215_01_A05, Mouse strain C57BL/6J (56 days, male) 5.1

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