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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BABAM2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
75.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
64.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
62.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
60.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
58.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
53.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
50.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
49.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
49.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
47.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
47.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
45.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
44.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
44.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
42.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
42.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
41.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
41.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
40.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
40.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
38.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
37.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
36.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
34.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
33.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
33.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
33.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
32.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
32.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
31.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
30.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
30.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
29.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
29.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
29.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
27.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
27.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
27.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
26.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
26.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
25.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
25.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
25.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
24.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
23.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
22.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
22.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
21.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
21.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
20.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
20.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
19.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
19.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
17.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
15.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
0.7
171
Tumor
0.4
745
Tumor
0.4
741
Tumor
0.4
617
Tumor
0.4
271
Tumor
0.4
756
Normal
0.4
231
Tumor
0.4
393
Tumor
0.4
727
Tumor
0.4
446
Normal
0.3
357
Tumor
0.3
147
Tumor
0.3
1021
Tumor
0.3
567
Tumor
0.3
123
Tumor
0.3
432
Normal
0.3
1042
Normal
0.3
423
Tumor
0.3
857
Tumor
0.3
431
Tumor
0.3
641
Tumor
0.2
737
Tumor
0.2
912
Normal
0.2
456
Normal
0.2
695
Tumor
0.2
436
Normal
0.2
196
Normal
0.2
257
Tumor
0.2
112
Tumor
0.2
351
Tumor
0.2
722
Normal
0.2
1026
Normal
0.2
755
Tumor
0.2
311
Tumor
0.2
425
Tumor
0.2
468
Normal
0.2
523
Tumor
0.2
327
Tumor
0.2
864
Normal
0.2
746
Normal
0.2
466
Normal
0.2
786
Normal
0.2
444
Normal
0.2
785
Tumor
0.2
884
Normal
0.2
951
Tumor
0.2
465
Tumor
0.2
697
Tumor
0.2
866
Normal
0.2
715
Tumor
0.2
464
Normal
0.2
411
Tumor
0.2
222
Normal
0.2
976
Normal
0.2
882
Normal
0.1
435
Tumor
0.1
261
Tumor
0.1
127
Tumor
0.1
187
Tumor
0.1
873
Tumor
0.1
212
Normal
0.1
434
Normal
0.1
413
Tumor
0.1
716
Normal
0.1
128
Normal
0.1
111
Normal
0.1
815
Tumor
0.1
227
Tumor
0.1
1027
Tumor
0.1
214
Normal
0.1
978
Normal
0.1
647
Tumor
0.1
824
Normal
0.1
983
Tumor
0.1
615
Tumor
0.1
114
Normal
0.1
445
Tumor
0.1
462
Normal
0.1
881
Tumor
0.1
817
Tumor
0.1
328
Normal
0.1
356
Normal
0.1
426
Normal
0.1
666
Normal
0.1
777
Tumor
0.1
877
Tumor
0.1
981
Tumor
0.1
218
Normal
0.1
914
Normal
0.1
818
Normal
0.1
416
Normal
0.1
977
Tumor
0.1
696
Normal
0.1
224
Normal
0.1
386
Normal
0.1
665
Tumor
0.1
414
Normal
0.1
952
Normal
0.1
982
Normal
0.1
635
Tumor
0.1
868
Normal
0.1
353
Tumor
0.1
861
Tumor
0.1
925
Tumor
0.1
223
Tumor
0.1
518
Normal
0.1
1016
Normal
0.1
921
Tumor
0.1
714
Normal
0.1
778
Normal
0.1
1043
Tumor
0.1
964
Normal
0.1
744
Normal
0.1
911
Tumor
0.1
421
Tumor
0.1
883
Tumor
0.1
924
Normal
0.1
352
Normal
0.1
192
Normal
0.1
1032
Normal
0.1
221
Tumor
0.1
172
Normal
0.1
135
Tumor
0.1
878
Normal
0.1
125
Tumor
0.1
967
Tumor
0.1
686
Normal
0.1
391
Tumor
0.1
867
Tumor
0.1
816
Normal
0.1
455
Tumor
0.1
955
Tumor
0.1
297
Tumor
0.1
148
Normal
0.0
162
Normal
0.0
354
Normal
0.0
186
Normal
0.0
648
Normal
0.0
628
Normal
0.0
742
Normal
0.0
131
Tumor
0.0
664
Normal
0.0
958
Normal
0.0
451
Tumor
0.0
738
Normal
0.0
723
Tumor
0.0
394
Normal
0.0
662
Normal
0.0
124
Normal
0.0
937
Tumor
0.0
953
Tumor
0.0
358
Normal
0.0
211
Tumor
0.0
672
Normal
0.0
145
Tumor
0.0
553
Tumor
0.0
874
Normal
0.0
188
Normal
0.0
618
Normal
0.0
557
Tumor
0.0
661
Tumor
0.0
284
Normal
0.0
1022
Normal
0.0
728
Normal
0.0
298
Normal
0.0
132
Normal
0.0
516
Normal
0.0
312
Normal
0.0
433
Tumor
0.0
858
Normal
0.0
341
Tumor
0.0
571
Tumor
0.0
228
Normal
0.0
331
Tumor
0.0
388
Normal
0.0
968
Normal
0.0
528
Normal
0.0
862
Normal
0.0
452
Normal
0.0
344
Normal
0.0
361
Tumor
0.0
428
Normal
0.0
424
Normal
0.0
642
Normal
0.0
616
Normal
0.0
343
Tumor
0.0
383
Tumor
0.0
743
Tumor
0.0
698
Normal
0.0
376
Normal
0.0
267
Tumor
0.0
721
Tumor
0.0
461
Tumor
0.0
447
Tumor
0.0
146
Normal
0.0
385
Tumor
0.0
915
Tumor
0.0
395
Tumor
0.0
286
Normal
0.0
492
Normal
0.0
926
Normal
0.0
923
Tumor
0.0
272
Normal
0.0
1014
Normal
0.0
724
Normal
0.0
1041
Tumor
0.0
636
Normal
0.0
574
Normal
0.0
126
Normal
0.0
467
Tumor
0.0
113
Tumor
0.0
268
Normal
0.0
262
Normal
0.0
513
Tumor
0.0
527
Tumor
0.0
443
Tumor
0.0
136
Normal
0.0
161
Tumor
0.0
526
Normal
0.0
572
Normal
0.0
814
Normal
-0.1
142
Normal
-0.1
917
Tumor
-0.1
1028
Normal
-0.1
482
Normal
-0.1
185
Tumor
-0.1
713
Tumor
-0.1
362
Normal
-0.1
283
Tumor
-0.1
412
Normal
-0.1
851
Tumor
-0.1
422
Normal
-0.1
392
Normal
-0.1
191
Tumor
-0.1
863
Tumor
-0.1
366
Normal
-0.1
342
Normal
-0.1
313
Tumor
-0.1
138
Normal
-0.1
813
Tumor
-0.1
545
Tumor
-0.1
943
Tumor
-0.1
916
Normal
-0.1
852
Normal
-0.1
387
Tumor
-0.1
1045
Tumor
-0.1
538
Normal
-0.1
966
Normal
-0.1
944
Normal
-0.1
546
Normal
-0.1
984
Normal
-0.1
1013
Tumor
-0.1
515
Tumor
-0.1
364
Normal
-0.1
558
Normal
-0.1
534
Normal
-0.1
258
Normal
-0.1
278
Normal
-0.1
517
Tumor
-0.1
448
Normal
-0.1
524
Normal
-0.1
938
Normal
-0.1
141
Tumor
-0.1
195
Tumor
-0.1
922
Normal
-0.1
627
Tumor
-0.1
396
Normal
-0.1
564
Normal
-0.1
1031
Tumor
-0.1
277
Tumor
-0.1
217
Tumor
-0.1
514
Normal
-0.1
956
Normal
-0.1
554
Normal
-0.1
474
Normal
-0.1
384
Normal
-0.1
913
Tumor
-0.1
472
Normal
-0.1
823
Tumor
-0.1
314
Normal
-0.1
536
Normal
-0.1
137
Tumor
-0.1
285
Tumor
-0.1
918
Normal
-0.1
1025
Tumor
-0.1
671
Tumor
-0.1
493
Tumor
-0.1
963
Tumor
-0.2
563
Tumor
-0.2
484
Normal
-0.2
481
Tumor
-0.2
367
Tumor
-0.2
232
Normal
-0.2
525
Tumor
-0.2
332
Normal
-0.2
463
Tumor
-0.2
535
Tumor
-0.2
1015
Tumor
-0.2
663
Tumor
-0.2
1044
Normal
-0.2
415
Tumor
-0.2
213
Tumor
-0.2
427
Tumor
-0.2
497
Tumor
-0.2
568
Normal
-0.2
1046
Normal
-0.2
573
Tumor
-0.2
537
Tumor
-0.2
477
Tumor
-0.2
965
Tumor
-0.2
975
Tumor
-0.2
533
Tumor
-0.2
494
Normal
-0.2
483
Tumor
-0.3
478
Normal
-0.3
865
Tumor
-0.3
368
Normal
-0.3
375
Tumor
-0.3
488
Normal
-0.3
471
Tumor
-0.3
491
Tumor
-0.3
954
Normal
-0.3
487
Tumor
-0.3
355
Tumor
-0.4
363
Tumor
-0.4
365
Tumor
-0.4
498
Normal
-0.4
473
Tumor
-0.6
957
Tumor
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
