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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NECAP2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
74.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
72.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
62.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
59.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
56.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
51.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
50.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
50.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
49.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
46.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
44.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
43.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
43.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
42.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
41.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
41.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
41.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
41.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
40.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
39.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
39.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
39.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
38.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
38.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
38.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
38.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
37.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
36.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
36.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
36.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
35.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
35.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
34.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
33.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
32.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
32.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
31.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
31.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
31.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
30.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
29.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
29.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
29.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
27.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
27.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
26.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
25.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
25.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
25.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
25.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
24.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
24.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
23.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
22.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
22.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
21.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
21.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
21.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
20.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
20.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
20.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
17.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
15.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NECAP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.2
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
100.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
87.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
70.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
60.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
56.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
55.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
47.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
44.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
44.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
41.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
40.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
40.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
40.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
39.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
39.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
38.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
38.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
37.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
37.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
37.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
37.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
34.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
34.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
34.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
34.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
34.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
34.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
34.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
33.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
33.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
32.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
32.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
32.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
32.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
31.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
31.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
31.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
31.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
30.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
30.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
30.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
29.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
29.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
29.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
29.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
28.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
28.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
27.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
27.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
27.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
24.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
22.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
22.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
0.7
538
Normal
0.7
492
Normal
0.6
478
Normal
0.6
524
Normal
0.6
434
Normal
0.5
554
Normal
0.5
498
Normal
0.5
528
Normal
0.5
617
Tumor
0.5
124
Normal
0.5
661
Tumor
0.5
916
Normal
0.5
268
Normal
0.4
686
Normal
0.4
966
Normal
0.4
918
Normal
0.4
852
Normal
0.4
952
Normal
0.4
778
Normal
0.4
366
Normal
0.4
283
Tumor
0.4
884
Normal
0.4
954
Normal
0.4
968
Normal
0.4
824
Normal
0.4
262
Normal
0.4
368
Normal
0.4
125
Tumor
0.4
114
Normal
0.4
518
Normal
0.4
724
Normal
0.4
978
Normal
0.4
395
Tumor
0.4
362
Normal
0.4
912
Normal
0.4
716
Normal
0.4
126
Normal
0.3
444
Normal
0.3
1028
Normal
0.3
383
Tumor
0.3
878
Normal
0.3
861
Tumor
0.3
858
Normal
0.3
958
Normal
0.3
188
Normal
0.3
142
Normal
0.3
636
Normal
0.3
984
Normal
0.3
384
Normal
0.3
925
Tumor
0.3
938
Normal
0.3
816
Normal
0.3
696
Normal
0.3
926
Normal
0.3
616
Normal
0.3
516
Normal
0.3
874
Normal
0.3
628
Normal
0.3
224
Normal
0.3
375
Tumor
0.3
882
Normal
0.3
943
Tumor
0.3
311
Tumor
0.3
494
Normal
0.3
212
Normal
0.3
944
Normal
0.3
857
Tumor
0.3
723
Tumor
0.3
352
Normal
0.3
472
Normal
0.3
488
Normal
0.3
272
Normal
0.3
536
Normal
0.3
955
Tumor
0.3
922
Normal
0.3
344
Normal
0.3
232
Normal
0.3
823
Tumor
0.3
481
Tumor
0.3
455
Tumor
0.3
1014
Normal
0.3
738
Normal
0.3
534
Normal
0.3
956
Normal
0.3
618
Normal
0.3
474
Normal
0.3
721
Tumor
0.3
914
Normal
0.3
258
Normal
0.3
525
Tumor
0.3
484
Normal
0.2
868
Normal
0.2
965
Tumor
0.2
917
Tumor
0.2
217
Tumor
0.2
218
Normal
0.2
862
Normal
0.2
526
Normal
0.2
964
Normal
0.2
328
Normal
0.2
473
Tumor
0.2
728
Normal
0.2
976
Normal
0.2
467
Tumor
0.2
136
Normal
0.2
558
Normal
0.2
756
Normal
0.2
415
Tumor
0.2
141
Tumor
0.2
818
Normal
0.2
365
Tumor
0.2
213
Tumor
0.2
185
Tumor
0.2
714
Normal
0.2
462
Normal
0.2
744
Normal
0.2
138
Normal
0.2
412
Normal
0.2
864
Normal
0.2
456
Normal
0.2
343
Tumor
0.2
298
Normal
0.2
468
Normal
0.2
261
Tumor
0.2
564
Normal
0.2
396
Normal
0.2
883
Tumor
0.2
391
Tumor
0.2
533
Tumor
0.2
286
Normal
0.2
866
Normal
0.2
364
Normal
0.2
192
Normal
0.2
672
Normal
0.2
493
Tumor
0.2
924
Normal
0.2
1026
Normal
0.2
1022
Normal
0.2
742
Normal
0.2
1044
Normal
0.2
642
Normal
0.2
482
Normal
0.2
698
Normal
0.2
284
Normal
0.2
913
Tumor
0.2
223
Tumor
0.2
867
Tumor
0.2
111
Normal
0.2
452
Normal
0.2
466
Normal
0.2
546
Normal
0.2
461
Tumor
0.2
195
Tumor
0.1
1016
Normal
0.1
376
Normal
0.1
746
Normal
0.1
214
Normal
0.1
722
Normal
0.1
432
Normal
0.1
648
Normal
0.1
392
Normal
0.1
421
Tumor
0.1
491
Tumor
0.1
563
Tumor
0.1
196
Normal
0.1
664
Normal
0.1
355
Tumor
0.1
863
Tumor
0.1
814
Normal
0.1
146
Normal
0.1
477
Tumor
0.1
557
Tumor
0.1
1042
Normal
0.1
514
Normal
0.1
662
Normal
0.1
963
Tumor
0.1
128
Normal
0.1
354
Normal
0.1
228
Normal
0.1
446
Normal
0.1
367
Tumor
0.1
1046
Normal
0.1
451
Tumor
0.1
666
Normal
0.1
951
Tumor
0.1
553
Tumor
0.1
386
Normal
0.1
1032
Normal
0.1
425
Tumor
0.1
713
Tumor
0.1
464
Normal
0.1
416
Normal
0.1
388
Normal
0.1
571
Tumor
0.1
356
Normal
0.1
465
Tumor
0.1
663
Tumor
0.1
975
Tumor
0.1
568
Normal
0.1
497
Tumor
0.1
567
Tumor
0.1
113
Tumor
0.1
358
Normal
0.1
915
Tumor
0.1
257
Tumor
0.1
817
Tumor
0.1
572
Normal
0.1
448
Normal
0.0
137
Tumor
0.0
737
Tumor
0.0
172
Normal
0.0
881
Tumor
0.0
1015
Tumor
0.0
422
Normal
0.0
727
Tumor
0.0
162
Normal
0.0
231
Tumor
0.0
573
Tumor
0.0
297
Tumor
0.0
447
Tumor
0.0
574
Normal
0.0
436
Normal
0.0
615
Tumor
0.0
513
Tumor
0.0
387
Tumor
0.0
535
Tumor
0.0
545
Tumor
0.0
112
Tumor
0.0
1045
Tumor
0.0
424
Normal
0.0
148
Normal
0.0
982
Normal
0.0
953
Tumor
0.0
471
Tumor
0.0
332
Normal
0.0
1027
Tumor
0.0
394
Normal
0.0
222
Normal
0.0
186
Normal
0.0
786
Normal
0.0
1031
Tumor
0.0
741
Tumor
0.0
161
Tumor
0.0
312
Normal
0.0
278
Normal
0.0
132
Normal
0.0
981
Tumor
0.0
851
Tumor
-0.1
428
Normal
-0.1
483
Tumor
-0.1
414
Normal
-0.1
221
Tumor
-0.1
755
Tumor
-0.1
627
Tumor
-0.1
937
Tumor
-0.1
123
Tumor
-0.1
342
Normal
-0.1
361
Tumor
-0.1
515
Tumor
-0.1
267
Tumor
-0.1
641
Tumor
-0.1
327
Tumor
-0.1
385
Tumor
-0.1
923
Tumor
-0.1
433
Tumor
-0.1
967
Tumor
-0.1
865
Tumor
-0.1
527
Tumor
-0.1
271
Tumor
-0.1
413
Tumor
-0.2
171
Tumor
-0.2
135
Tumor
-0.2
1021
Tumor
-0.2
537
Tumor
-0.2
145
Tumor
-0.2
1013
Tumor
-0.2
715
Tumor
-0.2
443
Tumor
-0.2
977
Tumor
-0.2
777
Tumor
-0.2
1043
Tumor
-0.2
363
Tumor
-0.2
685
Tumor
-0.2
813
Tumor
-0.2
191
Tumor
-0.2
277
Tumor
-0.2
187
Tumor
-0.2
1041
Tumor
-0.2
785
Tumor
-0.2
353
Tumor
-0.2
921
Tumor
-0.2
487
Tumor
-0.2
697
Tumor
-0.2
431
Tumor
-0.2
423
Tumor
-0.2
983
Tumor
-0.2
463
Tumor
-0.3
285
Tumor
-0.3
426
Normal
-0.3
815
Tumor
-0.3
314
Normal
-0.3
873
Tumor
-0.3
877
Tumor
-0.3
695
Tumor
-0.3
445
Tumor
-0.3
427
Tumor
-0.3
665
Tumor
-0.4
341
Tumor
-0.4
147
Tumor
-0.4
745
Tumor
-0.4
227
Tumor
-0.4
671
Tumor
-0.4
911
Tumor
-0.4
1025
Tumor
-0.5
411
Tumor
-0.5
351
Tumor
-0.5
127
Tumor
-0.5
313
Tumor
-0.5
435
Tumor
-0.5
331
Tumor
-0.5
357
Tumor
-0.6
517
Tumor
-0.6
957
Tumor
-0.6
635
Tumor
-0.6
131
Tumor
-0.7
393
Tumor
-0.7
743
Tumor
-0.7
523
Tumor
-0.8
647
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
